Wall clock time and date at job start Mon Mar 30 2020 05:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00165 * 2 1 4 4 H 1.48504 * 109.47252 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47091 * 300.00206 * 3 2 1 6 6 H 1.48498 * 109.47004 * 60.00435 * 3 2 1 7 7 C 1.37881 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47027 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.47193 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47193 * 179.97438 * 11 10 9 13 13 H 1.09007 * 109.46917 * 55.00182 * 12 11 10 14 14 N 1.46903 * 109.47265 * 295.00126 * 12 11 10 15 15 C 1.50698 * 109.47138 * 174.99948 * 12 11 10 16 16 O 1.21275 * 119.99984 * 100.00106 * 15 12 11 17 17 N 1.34776 * 119.99999 * 280.00044 * 15 12 11 18 18 N 1.36601 * 120.00189 * 174.98758 * 17 15 12 19 19 C 1.48538 * 111.00309 * 117.91831 * 18 17 15 20 20 C 1.54930 * 103.22695 * 159.72112 * 19 18 17 21 21 C 1.54588 * 102.92759 * 322.58973 * 20 19 18 22 22 C 1.47897 * 111.00393 * 235.31959 * 18 17 15 23 23 H 0.96999 * 120.00073 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47325 * 59.99769 * 9 7 2 25 25 H 1.09007 * 109.47015 * 300.00010 * 9 7 2 26 26 H 1.09000 * 109.47111 * 60.00384 * 10 9 7 27 27 H 1.08999 * 109.47568 * 299.99704 * 10 9 7 28 28 H 1.09000 * 109.47127 * 59.99989 * 11 10 9 29 29 H 1.08999 * 109.46737 * 300.00354 * 11 10 9 30 30 H 1.00897 * 111.00033 * 176.04585 * 14 12 11 31 31 H 1.00893 * 110.99481 * 299.99758 * 14 12 11 32 32 H 0.97003 * 120.00620 * 354.99000 * 17 15 12 33 33 H 1.08995 * 110.66830 * 278.16473 * 19 18 17 34 34 H 1.09004 * 110.65991 * 41.29083 * 19 18 17 35 35 H 1.09003 * 110.72565 * 204.23126 * 20 19 18 36 36 H 1.09003 * 110.72219 * 80.95473 * 20 19 18 37 37 H 1.09000 * 110.31100 * 263.04165 * 21 20 19 38 38 H 1.08998 * 110.30983 * 140.86672 * 21 20 19 39 39 H 1.08997 * 109.91753 * 333.50817 * 22 18 17 40 40 H 1.08999 * 109.92154 * 94.60359 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 6 1.4801 -4.9872 -0.0033 12 6 2.4743 -6.1500 -0.0050 13 1 3.1591 -6.0438 0.8365 14 7 3.2366 -6.1408 -1.2607 15 6 1.7250 -7.4517 0.1183 16 8 1.5120 -8.1245 -0.8679 17 7 1.2916 -7.8681 1.3247 18 7 0.5249 -8.9943 1.4236 19 6 1.2079 -10.0337 2.2358 20 6 0.0465 -10.9606 2.6745 21 6 -1.1101 -9.9677 2.9317 22 6 -0.7479 -8.7096 2.1208 23 1 -0.4850 0.8400 0.0004 24 1 0.6246 -2.5563 -0.8919 25 1 0.6239 -2.5575 0.8881 26 1 2.8718 -3.6052 0.8873 27 1 2.8718 -3.6036 -0.8927 28 1 0.8532 -5.0444 -0.8931 29 1 0.8538 -5.0453 0.8869 30 1 3.9442 -6.8600 -1.2595 31 1 2.6237 -6.2380 -2.0563 32 1 1.5241 -7.3681 2.1227 33 1 1.9301 -10.5817 1.6308 34 1 1.6922 -9.5866 3.1040 35 1 0.3048 -11.4967 3.5878 36 1 -0.2131 -11.6572 1.8774 37 1 -1.1742 -9.7282 3.9931 38 1 -2.0531 -10.3860 2.5798 39 1 -0.6220 -7.8593 2.7911 40 1 -1.5304 -8.4954 1.3928 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686769197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:09 Heat of formation + Delta-G solvation = -49.171398 kcal Electronic energy + Delta-G solvation = -18879.748863 eV Core-core repulsion = 15921.431843 eV Total energy + Delta-G solvation = -2958.317020 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.36850 -39.52458 -37.07323 -35.25183 -35.21855 -33.11602 -30.48437 -29.94839 -29.28394 -26.56127 -24.29233 -22.64063 -21.90165 -21.77279 -21.36859 -18.77693 -18.42413 -18.29226 -17.09183 -16.67551 -16.45171 -16.26030 -15.58277 -15.47969 -14.86524 -14.54510 -14.28839 -14.18647 -13.78476 -13.62556 -13.45364 -13.10709 -12.84961 -12.50215 -12.36812 -12.32801 -12.23408 -12.17345 -11.53294 -11.49370 -11.37522 -11.21153 -10.94289 -10.51989 -10.33745 -9.95350 -9.70639 -8.16635 -6.26978 1.41601 1.42512 1.48505 1.56017 1.75264 2.44009 3.16576 3.24625 3.47793 3.69512 3.74196 3.95202 4.01260 4.02427 4.15891 4.19490 4.46181 4.52514 4.61724 4.67525 4.78898 4.86045 4.92408 4.94397 5.09229 5.14480 5.17441 5.27665 5.35332 5.60080 5.61956 5.85301 5.94565 6.00909 6.17446 6.31162 6.34463 6.49115 6.91242 7.42172 7.44987 8.95412 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.031940 B = 0.003610 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.423619 B = 7754.661382 C = 8324.244090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.277 1.277 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.021 3.979 10 C -0.083 4.083 11 C -0.093 4.093 12 C 0.094 3.906 13 H 0.127 0.873 14 N -0.815 5.815 15 C 0.502 3.498 16 O -0.565 6.565 17 N -0.578 5.578 18 N -0.304 5.304 19 C 0.013 3.987 20 C -0.117 4.117 21 C -0.124 4.124 22 C 0.010 3.990 23 H 0.262 0.738 24 H -0.017 1.017 25 H -0.008 1.008 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.350 0.650 31 H 0.346 0.654 32 H 0.395 0.605 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.064 0.936 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.501 -21.144 8.844 23.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.789 3.211 4 H -0.185 1.185 5 H -0.207 1.207 6 H -0.203 1.203 7 C -0.576 4.576 8 H 0.079 0.921 9 C -0.016 4.016 10 C -0.121 4.121 11 C -0.132 4.132 12 C -0.023 4.023 13 H 0.144 0.856 14 N -0.344 5.344 15 C 0.288 3.712 16 O -0.441 6.441 17 N -0.323 5.323 18 N -0.122 5.122 19 C -0.115 4.115 20 C -0.155 4.155 21 C -0.163 4.163 22 C -0.118 4.118 23 H 0.071 0.929 24 H 0.002 0.998 25 H 0.010 0.990 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.164 0.836 31 H 0.160 0.840 32 H 0.236 0.764 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.368 -20.902 7.794 22.433 hybrid contribution -0.322 0.496 0.802 0.996 sum 2.047 -20.405 8.596 22.237 Atomic orbital electron populations 1.70110 1.07826 1.27559 1.52168 1.25998 0.95758 1.03399 0.94938 0.85411 0.79194 0.78840 0.77679 1.18454 1.20653 1.20306 1.21773 0.93616 0.92433 1.49791 0.92106 1.19063 0.94595 0.93535 0.94433 1.21284 0.97516 0.91900 1.01398 1.21450 0.96689 0.93338 1.01677 1.21603 0.95401 0.88901 0.96382 0.85574 1.59081 1.17478 1.54786 1.03086 1.22576 0.78521 0.88055 0.82077 1.90641 1.57638 1.57820 1.38015 1.45712 1.52437 1.24576 1.09621 1.65856 1.00087 0.97957 1.48255 1.23810 0.98078 0.93288 0.96295 1.22464 0.93355 0.97128 1.02584 1.22394 0.99661 0.93714 1.00510 1.23440 0.91624 0.99541 0.97183 0.92913 0.99815 0.98975 0.92410 0.92393 0.93631 0.91080 0.83613 0.84032 0.76361 0.90417 0.91236 0.88132 0.90921 0.89279 0.89941 0.91722 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.75 13.29 21.45 0.28 -57.47 16 2 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 3 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 7 C -0.54 -30.98 9.11 25.60 0.23 -30.75 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.02 1.11 4.97 29.85 0.15 1.25 16 10 C -0.08 -3.35 5.04 30.59 0.15 -3.20 16 11 C -0.09 -3.05 4.84 30.59 0.15 -2.90 16 12 C 0.09 2.45 3.15 44.17 0.14 2.59 16 13 H 0.13 2.64 8.14 -2.38 -0.02 2.62 16 14 N -0.82 -21.66 8.44 -171.80 -1.45 -23.11 16 15 C 0.50 13.97 7.17 87.66 0.63 14.59 16 16 O -0.56 -20.19 16.58 -3.01 -0.05 -20.24 16 17 N -0.58 -12.90 4.74 -173.54 -0.82 -13.72 16 18 N -0.30 -6.83 5.15 -502.21 -2.59 -9.41 16 19 C 0.01 0.20 6.85 86.65 0.59 0.80 16 20 C -0.12 -1.39 7.06 31.79 0.22 -1.17 16 21 C -0.12 -1.52 6.93 31.47 0.22 -1.30 16 22 C 0.01 0.18 6.92 86.45 0.60 0.78 16 23 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 24 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 25 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 26 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.06 2.41 7.75 -2.39 -0.02 2.39 16 28 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.35 7.88 9.06 -89.70 -0.81 7.06 16 31 H 0.35 9.96 8.58 -89.70 -0.77 9.19 16 32 H 0.40 6.61 8.73 -215.49 -1.88 4.73 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.06 1.08 7.91 -2.39 -0.02 1.06 16 40 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -72.99 330.50 -1.48 -74.47 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -2.43 Total: 21.80 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 3.55 Total: -19.07 kcal Atomic # 7 Polarization: -99.14 SS G_CDS: -4.58 Total: -103.71 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.05 Total: -20.24 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -72.99 -1.48 -74.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686769197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.296 kcal (2) G-P(sol) polarization free energy of solvation -72.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds