Wall clock time and date at job start Mon Mar 30 2020 05:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47664 * 2 1 4 4 H 1.09002 * 109.47034 * 305.00058 * 3 2 1 5 5 C 1.50699 * 109.47446 * 184.99761 * 3 2 1 6 6 H 1.07996 * 120.00244 * 239.99700 * 5 3 2 7 7 C 1.37879 * 119.99638 * 60.00098 * 5 3 2 8 8 N 1.31507 * 120.00352 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99487 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47342 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46966 * 120.00050 * 9 7 5 12 12 H 1.48494 * 109.47250 * 239.99580 * 9 7 5 13 13 N 1.46500 * 109.46970 * 64.99426 * 3 2 1 14 14 C 1.34776 * 120.00443 * 275.00192 * 13 3 2 15 15 O 1.21284 * 119.99601 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00344 * 180.02562 * 14 13 3 17 17 H 1.08995 * 109.50322 * 326.78910 * 16 14 13 18 18 C 1.53052 * 109.48810 * 86.84122 * 16 14 13 19 19 N 1.46959 * 109.36481 * 178.36939 * 18 16 14 20 20 C 1.46959 * 110.87937 * 300.68333 * 19 18 16 21 21 C 1.53051 * 109.38305 * 59.30436 * 20 19 18 22 22 N 1.46949 * 109.49011 * 206.73594 * 16 14 13 23 23 C 1.46905 * 111.00152 * 56.84069 * 22 16 14 24 24 H 1.09004 * 109.47002 * 60.00384 * 1 2 3 25 25 H 1.08992 * 109.47388 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47198 * 300.00771 * 1 2 3 27 27 H 1.09001 * 109.47198 * 239.99229 * 2 1 3 28 28 H 1.08999 * 109.47168 * 120.00043 * 2 1 3 29 29 H 0.97005 * 120.00365 * 179.97438 * 8 7 5 30 30 H 0.97002 * 119.99860 * 95.01181 * 13 3 2 31 31 H 1.09008 * 109.48467 * 58.40566 * 18 16 14 32 32 H 1.08995 * 109.49204 * 298.34154 * 18 16 14 33 33 H 1.00897 * 111.00217 * 176.81490 * 19 18 16 34 34 H 1.08994 * 109.48968 * 179.28362 * 20 19 18 35 35 H 1.08997 * 109.48663 * 299.33206 * 20 19 18 36 36 H 1.09009 * 109.48524 * 61.57980 * 21 20 19 37 37 H 1.08997 * 109.49006 * 181.64148 * 21 20 19 38 38 H 1.08998 * 109.46909 * 53.25478 * 23 22 16 39 39 H 1.09002 * 109.47241 * 173.25444 * 23 22 16 40 40 H 1.08995 * 109.47285 * 293.25408 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4441 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4063 0.3365 -2.1728 9 14 6.0050 0.8810 -1.3817 10 1 6.5988 1.5459 -0.1941 11 1 6.4971 -0.5178 -1.4628 12 1 6.3991 1.6164 -2.6101 13 7 1.6524 2.0974 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3395 2.6320 0.4343 16 6 0.0367 3.3387 2.6543 17 1 0.4970 2.8193 3.4948 18 6 0.5068 4.7951 2.6347 19 7 0.0828 5.4608 3.8744 20 6 -1.3795 5.4225 4.0158 21 6 -1.8500 3.9662 4.0351 22 7 -1.4255 3.3005 2.7957 23 6 -1.9236 1.9195 2.7427 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5140 0.8899 27 1 1.8933 -0.5140 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8293 -0.0614 -2.9498 30 1 2.2720 2.1232 1.9977 31 1 0.0678 5.3074 1.7785 32 1 1.5937 4.8255 2.5590 33 1 0.4248 6.4093 3.9108 34 1 -1.6677 5.9101 4.9470 35 1 -1.8398 5.9422 3.1754 36 1 -1.4114 3.4537 4.8914 37 1 -2.9369 3.9362 4.1105 38 1 -1.3910 1.3128 3.4750 39 1 -2.9899 1.9089 2.9687 40 1 -1.7596 1.5121 1.7451 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686925103.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:56 Heat of formation + Delta-G solvation = -51.369562 kcal Electronic energy + Delta-G solvation = -20260.916894 eV Core-core repulsion = 17302.504555 eV Total energy + Delta-G solvation = -2958.412339 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.31769 -39.21306 -36.85487 -35.35612 -34.29833 -33.13049 -31.81051 -29.07034 -28.61959 -25.66042 -24.70377 -24.39062 -22.33869 -21.18625 -20.69088 -19.06482 -17.79970 -17.48245 -16.93648 -16.56941 -16.05657 -15.77399 -15.58750 -15.34359 -15.22050 -14.71054 -14.60516 -14.01532 -13.71139 -13.48677 -13.17755 -13.11599 -12.95776 -12.85536 -12.68517 -12.53444 -12.13107 -12.05900 -11.98895 -11.83612 -11.54245 -11.03486 -10.59233 -10.43982 -9.61685 -9.59903 -9.28913 -8.15448 -6.32577 1.44261 1.45687 1.57287 1.79462 2.30138 2.50265 2.96436 3.14256 3.28281 3.82938 3.96518 4.02352 4.10578 4.33681 4.38723 4.47712 4.49371 4.55657 4.58243 4.65097 4.75658 4.79193 4.94075 4.95676 5.02491 5.13597 5.28760 5.45701 5.56454 5.63938 5.74979 5.79979 5.87406 5.97104 6.09034 6.17967 6.42537 6.75851 7.01908 7.34748 7.60405 8.90088 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.030619 B = 0.005766 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.237802 B = 4855.220858 C = 5529.407321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.120 4.120 3 C 0.280 3.720 4 H -0.003 1.003 5 C -0.546 4.546 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.260 1.260 11 H -0.280 1.280 12 H -0.284 1.284 13 N -0.705 5.705 14 C 0.506 3.494 15 O -0.567 6.567 16 C 0.080 3.920 17 H 0.073 0.927 18 C 0.076 3.924 19 N -0.685 5.685 20 C 0.056 3.944 21 C 0.055 3.945 22 N -0.540 5.540 23 C 0.021 3.979 24 H 0.024 0.976 25 H 0.044 0.956 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.039 0.961 29 H 0.264 0.736 30 H 0.401 0.599 31 H 0.027 0.973 32 H 0.091 0.909 33 H 0.360 0.640 34 H 0.110 0.890 35 H 0.032 0.968 36 H 0.045 0.955 37 H 0.099 0.901 38 H 0.029 0.971 39 H 0.088 0.912 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.553 7.068 14.547 17.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.015 0.985 5 C -0.584 4.584 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.210 1.210 13 N -0.354 5.354 14 C 0.291 3.709 15 O -0.446 6.446 16 C -0.032 4.032 17 H 0.091 0.909 18 C -0.054 4.054 19 N -0.318 5.318 20 C -0.073 4.073 21 C -0.073 4.073 22 N -0.266 5.266 23 C -0.126 4.126 24 H 0.043 0.957 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.235 0.765 31 H 0.045 0.955 32 H 0.109 0.891 33 H 0.180 0.820 34 H 0.128 0.872 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.117 0.883 38 H 0.048 0.952 39 H 0.106 0.894 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.190 6.658 13.704 16.847 hybrid contribution 1.197 -0.071 -0.473 1.289 sum -5.993 6.587 13.231 15.949 Atomic orbital electron populations 1.21742 0.96968 0.99095 1.00471 1.21777 0.93796 0.99208 1.01171 1.18345 0.93626 0.89069 0.81271 0.98485 1.21606 0.91418 1.38749 1.06621 0.91057 1.25757 1.03228 0.94404 0.95044 1.70054 1.36977 1.38471 1.09900 0.85337 0.79245 0.77789 0.78201 1.18420 1.20529 1.21049 1.46313 1.15490 1.55993 1.17621 1.20738 0.81871 0.78606 0.89716 1.90652 1.52093 1.60121 1.41700 1.21566 0.90053 0.97433 0.94152 0.90945 1.21730 1.00625 0.91487 0.91596 1.60494 1.12118 1.23629 1.35517 1.22119 0.87213 0.95878 1.02102 1.22348 1.01287 0.94489 0.89141 1.61854 1.08801 1.18123 1.37801 1.22472 1.01145 0.87786 1.01234 0.95709 0.93727 0.93188 0.91090 0.94205 0.92647 0.76464 0.95509 0.89080 0.82018 0.87217 0.94922 0.93669 0.88319 0.95244 0.89380 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.69 8.51 71.98 0.61 -5.07 16 2 C -0.12 -5.97 5.45 30.59 0.17 -5.80 16 3 C 0.28 14.38 2.24 44.24 0.10 14.48 16 4 H 0.00 -0.17 7.58 -2.39 -0.02 -0.19 16 5 C -0.55 -28.77 8.73 25.60 0.22 -28.55 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 7 C 0.02 0.84 5.29 84.66 0.45 1.29 16 8 N -0.92 -52.48 11.29 21.45 0.24 -52.23 16 9 Si 0.97 42.02 29.54 68.60 2.03 44.04 16 10 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 11 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 12 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 13 N -0.70 -29.18 5.02 -446.10 -2.24 -31.42 16 14 C 0.51 20.18 4.77 87.66 0.42 20.60 16 15 O -0.57 -27.24 12.49 -3.04 -0.04 -27.28 16 16 C 0.08 2.46 2.34 44.18 0.10 2.57 16 17 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 18 C 0.08 2.05 5.98 86.31 0.52 2.56 16 19 N -0.68 -13.87 6.90 -513.43 -3.54 -17.41 16 20 C 0.06 1.03 6.72 86.31 0.58 1.61 16 21 C 0.05 1.14 5.61 86.31 0.48 1.63 16 22 N -0.54 -15.65 4.52 -900.98 -4.07 -19.72 16 23 C 0.02 0.61 9.10 127.69 1.16 1.77 16 24 H 0.02 1.21 7.85 -2.38 -0.02 1.19 16 25 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.05 2.16 4.07 -2.39 -0.01 2.15 16 27 H 0.07 3.94 5.95 -2.39 -0.01 3.93 16 28 H 0.04 1.85 8.14 -2.39 -0.02 1.84 16 29 H 0.26 14.34 8.31 -92.70 -0.77 13.57 16 30 H 0.40 14.30 8.54 -92.71 -0.79 13.51 16 31 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.36 5.66 8.90 -89.70 -0.80 4.86 16 34 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.10 1.69 8.07 -2.39 -0.02 1.67 16 38 H 0.03 0.77 8.11 -2.39 -0.02 0.75 16 39 H 0.09 2.04 8.02 -2.39 -0.02 2.02 16 40 H 0.05 1.97 4.76 -2.39 -0.01 1.95 16 Total: -1.00 -65.78 308.85 -3.36 -69.14 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: -0.55 Total: 27.80 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 4.81 Total: 7.07 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -9.62 Total: -120.79 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.04 Total: -27.28 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -65.78 -3.36 -69.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686925103.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.775 kcal (2) G-P(sol) polarization free energy of solvation -65.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds