Wall clock time and date at job start Mon Mar 30 2020 05:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48500 * 109.46879 * 239.99461 * 3 2 1 5 5 H 1.48494 * 109.47196 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47151 * 119.99873 * 3 2 1 7 7 C 1.37887 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 H 1.09007 * 109.46744 * 55.00049 * 11 10 9 13 13 N 1.46895 * 109.47374 * 295.00371 * 11 10 9 14 14 C 1.50703 * 109.47148 * 175.00085 * 11 10 9 15 15 O 1.21276 * 119.99519 * 100.00359 * 14 11 10 16 16 N 1.34770 * 119.99684 * 280.00274 * 14 11 10 17 17 N 1.36598 * 119.99775 * 180.02562 * 16 14 11 18 18 C 1.46849 * 111.00254 * 244.21210 * 17 16 14 19 19 C 1.53036 * 109.52579 * 174.16212 * 18 17 16 20 20 C 1.53116 * 109.27952 * 59.17514 * 19 18 17 21 21 C 1.53117 * 109.16121 * 302.34678 * 20 19 18 22 22 C 1.46852 * 111.00402 * 119.99865 * 17 16 14 23 23 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 25 25 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 26 26 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 27 27 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 28 28 H 1.00895 * 111.00453 * 176.04277 * 13 11 10 29 29 H 1.00905 * 110.99912 * 299.99779 * 13 11 10 30 30 H 0.97000 * 120.00411 * 359.97438 * 16 14 11 31 31 H 1.09001 * 109.46025 * 294.17507 * 18 17 16 32 32 H 1.09000 * 109.46443 * 54.14225 * 18 17 16 33 33 H 1.08998 * 109.50232 * 299.23288 * 19 18 17 34 34 H 1.09001 * 109.50662 * 179.11962 * 19 18 17 35 35 H 1.09006 * 109.52103 * 182.44254 * 20 19 18 36 36 H 1.08996 * 109.57626 * 62.28887 * 20 19 18 37 37 H 1.09000 * 109.50299 * 297.70889 * 21 20 19 38 38 H 1.09000 * 109.49948 * 177.59866 * 21 20 19 39 39 H 1.09000 * 109.45841 * 305.85963 * 22 17 16 40 40 H 1.08998 * 109.45602 * 65.82432 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 1 0.7877 -5.0073 -0.8405 13 7 0.7287 -5.1182 1.2566 14 6 2.4547 -6.1300 -0.1226 15 8 2.7867 -6.7532 0.8633 16 7 2.9571 -6.4594 -1.3290 17 7 3.8401 -7.4956 -1.4413 18 6 5.1537 -7.0209 -1.8948 19 6 6.1529 -8.1797 -1.8695 20 6 5.6507 -9.3004 -2.7841 21 6 4.2606 -9.7433 -2.3194 22 6 3.3162 -8.5393 -2.3317 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8904 26 1 2.8718 -3.6044 0.8905 27 1 2.8717 -3.6045 -0.8894 28 1 0.1643 -5.9545 1.2547 29 1 1.3488 -5.1023 2.0525 30 1 2.6913 -5.9611 -2.1177 31 1 5.0697 -6.6359 -2.9111 32 1 5.5012 -6.2272 -1.2335 33 1 6.2478 -8.5563 -0.8511 34 1 7.1239 -7.8308 -2.2210 35 1 6.3375 -10.1454 -2.7356 36 1 5.5931 -8.9363 -3.8099 37 1 4.3257 -10.1446 -1.3081 38 1 3.8797 -10.5115 -2.9924 39 1 2.3292 -8.8483 -1.9877 40 1 3.2409 -8.1471 -3.3459 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691540851.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:18 Heat of formation + Delta-G solvation = -26.431092 kcal Electronic energy + Delta-G solvation = -19231.626785 eV Core-core repulsion = 16274.295859 eV Total energy + Delta-G solvation = -2957.330926 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.21431 -38.47932 -35.25067 -34.80668 -32.78443 -31.13685 -30.46787 -30.02357 -26.42093 -24.47159 -23.35525 -22.93742 -20.67237 -20.30527 -19.66102 -17.82085 -16.97321 -16.18363 -15.61845 -15.37652 -15.09353 -14.63150 -14.34100 -14.08379 -13.86225 -13.71899 -13.46551 -13.31170 -12.53572 -12.31035 -12.00429 -11.55105 -11.51263 -11.07937 -10.94538 -10.87702 -10.81501 -10.64320 -10.57004 -10.03917 -9.78928 -9.35955 -9.17780 -9.00640 -8.88991 -8.34519 -8.19864 -5.93578 -3.95776 2.70888 2.88118 3.36117 3.40761 3.43175 4.22384 4.49999 4.56908 4.60594 4.68178 4.90241 4.91420 5.04683 5.11373 5.25494 5.29295 5.41836 5.47033 5.52623 5.56755 5.62069 5.68300 5.83326 5.83842 5.88566 6.08309 6.43017 6.65382 6.65706 7.08299 7.34881 7.36165 7.59028 7.76040 7.81125 7.96544 8.13483 8.48502 8.65227 9.12044 9.67260 11.17302 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.030306 B = 0.004105 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.699066 B = 6819.647569 C = 7381.394041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.051 0.949 9 C 0.031 3.969 10 C -0.095 4.095 11 C 0.083 3.917 12 H 0.098 0.902 13 N -0.805 5.805 14 C 0.499 3.501 15 O -0.529 6.529 16 N -0.585 5.585 17 N -0.297 5.297 18 C 0.036 3.964 19 C -0.114 4.114 20 C -0.123 4.123 21 C -0.113 4.113 22 C 0.038 3.962 23 H 0.260 0.740 24 H 0.013 0.987 25 H 0.036 0.964 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.335 0.665 29 H 0.349 0.651 30 H 0.382 0.618 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.032 -18.159 -7.148 21.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.070 0.930 9 C -0.006 4.006 10 C -0.133 4.133 11 C -0.034 4.034 12 H 0.116 0.884 13 N -0.333 5.333 14 C 0.285 3.715 15 O -0.403 6.403 16 N -0.330 5.330 17 N -0.114 5.114 18 C -0.092 4.092 19 C -0.152 4.152 20 C -0.161 4.161 21 C -0.152 4.152 22 C -0.090 4.090 23 H 0.070 0.930 24 H 0.031 0.969 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.146 0.854 29 H 0.163 0.837 30 H 0.220 0.780 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.779 -17.964 -6.136 20.515 hybrid contribution 0.923 0.567 -1.275 1.673 sum 8.703 -17.397 -7.410 20.816 Atomic orbital electron populations 1.69963 1.05948 1.26534 1.50746 1.24991 0.94804 0.99035 0.95468 0.86710 0.79611 0.83428 0.78524 1.20406 1.21326 1.20290 1.21246 0.92861 0.91345 1.50728 0.93048 1.19016 0.93554 0.89786 0.98228 1.21664 0.98854 0.92141 1.00690 1.21832 0.93411 0.92989 0.95176 0.88436 1.59033 1.26759 1.44267 1.03207 1.22823 0.81623 0.85295 0.81747 1.90631 1.59767 1.53356 1.36496 1.45709 1.45062 1.31716 1.10539 1.62841 0.97294 1.01599 1.49662 1.22634 0.89056 0.98357 0.99109 1.21561 0.97515 0.95032 1.01124 1.21620 0.96765 0.98636 0.99090 1.21555 0.94640 0.96426 1.02571 1.22602 0.99403 0.92494 0.94518 0.93036 0.96897 0.94593 0.92730 0.92950 0.85362 0.83716 0.78017 0.94273 0.89931 0.90661 0.90996 0.91463 0.92145 0.90673 0.91073 0.90221 0.94333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 9 C 0.03 0.80 4.86 -27.89 -0.14 0.66 16 10 C -0.10 -1.91 4.78 -26.73 -0.13 -2.04 16 11 C 0.08 1.40 3.15 -68.86 -0.22 1.18 16 12 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 13 N -0.80 -13.59 8.44 -5.65 -0.05 -13.64 16 14 C 0.50 8.16 7.17 -10.99 -0.08 8.09 16 15 O -0.53 -10.32 16.57 5.56 0.09 -10.23 16 16 N -0.58 -7.92 4.77 31.22 0.15 -7.77 16 17 N -0.30 -3.80 4.50 -113.82 -0.51 -4.31 16 18 C 0.04 0.40 5.83 -3.83 -0.02 0.38 16 19 C -0.11 -1.03 6.09 -26.65 -0.16 -1.19 16 20 C -0.12 -0.95 6.00 -26.61 -0.16 -1.11 16 21 C -0.11 -0.95 6.09 -26.66 -0.16 -1.12 16 22 C 0.04 0.39 5.83 -3.83 -0.02 0.36 16 23 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.04 0.99 7.75 -51.93 -0.40 0.59 16 26 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.33 4.91 9.06 -39.29 -0.36 4.55 16 29 H 0.35 6.00 8.58 -39.29 -0.34 5.67 16 30 H 0.38 4.40 8.83 -185.16 -1.63 2.76 16 31 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 327.08 15.07 4.93 4.93 Total: -1.00 -32.77 327.08 -9.36 -42.13 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -8.19 Total: 6.64 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -1.50 Total: -8.30 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 0.33 Total: -51.89 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.77 -9.36 -42.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691540851.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.700 kcal (2) G-P(sol) polarization free energy of solvation -32.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds