Wall clock time and date at job start Mon Mar 30 2020 05:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48500 * 109.46879 * 239.99461 * 3 2 1 5 5 H 1.48494 * 109.47196 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47151 * 119.99873 * 3 2 1 7 7 C 1.37887 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 H 1.09007 * 109.46744 * 55.00049 * 11 10 9 13 13 N 1.46895 * 109.47374 * 295.00371 * 11 10 9 14 14 C 1.50703 * 109.47148 * 175.00085 * 11 10 9 15 15 O 1.21276 * 119.99519 * 100.00359 * 14 11 10 16 16 N 1.34770 * 119.99684 * 280.00274 * 14 11 10 17 17 N 1.36598 * 119.99775 * 180.02562 * 16 14 11 18 18 C 1.46849 * 111.00254 * 244.21210 * 17 16 14 19 19 C 1.53036 * 109.52579 * 174.16212 * 18 17 16 20 20 C 1.53116 * 109.27952 * 59.17514 * 19 18 17 21 21 C 1.53117 * 109.16121 * 302.34678 * 20 19 18 22 22 C 1.46852 * 111.00402 * 119.99865 * 17 16 14 23 23 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 25 25 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 26 26 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 27 27 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 28 28 H 1.00895 * 111.00453 * 176.04277 * 13 11 10 29 29 H 1.00905 * 110.99912 * 299.99779 * 13 11 10 30 30 H 0.97000 * 120.00411 * 359.97438 * 16 14 11 31 31 H 1.09001 * 109.46025 * 294.17507 * 18 17 16 32 32 H 1.09000 * 109.46443 * 54.14225 * 18 17 16 33 33 H 1.08998 * 109.50232 * 299.23288 * 19 18 17 34 34 H 1.09001 * 109.50662 * 179.11962 * 19 18 17 35 35 H 1.09006 * 109.52103 * 182.44254 * 20 19 18 36 36 H 1.08996 * 109.57626 * 62.28887 * 20 19 18 37 37 H 1.09000 * 109.50299 * 297.70889 * 21 20 19 38 38 H 1.09000 * 109.49948 * 177.59866 * 21 20 19 39 39 H 1.09000 * 109.45841 * 305.85963 * 22 17 16 40 40 H 1.08998 * 109.45602 * 65.82432 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 1 0.7877 -5.0073 -0.8405 13 7 0.7287 -5.1182 1.2566 14 6 2.4547 -6.1300 -0.1226 15 8 2.7867 -6.7532 0.8633 16 7 2.9571 -6.4594 -1.3290 17 7 3.8401 -7.4956 -1.4413 18 6 5.1537 -7.0209 -1.8948 19 6 6.1529 -8.1797 -1.8695 20 6 5.6507 -9.3004 -2.7841 21 6 4.2606 -9.7433 -2.3194 22 6 3.3162 -8.5393 -2.3317 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8904 26 1 2.8718 -3.6044 0.8905 27 1 2.8717 -3.6045 -0.8894 28 1 0.1643 -5.9545 1.2547 29 1 1.3488 -5.1023 2.0525 30 1 2.6913 -5.9611 -2.1177 31 1 5.0697 -6.6359 -2.9111 32 1 5.5012 -6.2272 -1.2335 33 1 6.2478 -8.5563 -0.8511 34 1 7.1239 -7.8308 -2.2210 35 1 6.3375 -10.1454 -2.7356 36 1 5.5931 -8.9363 -3.8099 37 1 4.3257 -10.1446 -1.3081 38 1 3.8797 -10.5115 -2.9924 39 1 2.3292 -8.8483 -1.9877 40 1 3.2409 -8.1471 -3.3459 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691540851.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:17 Heat of formation + Delta-G solvation = -50.243709 kcal Electronic energy + Delta-G solvation = -19232.659378 eV Core-core repulsion = 16274.295859 eV Total energy + Delta-G solvation = -2958.363519 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.35573 -39.55169 -36.76516 -35.87130 -34.79699 -31.94696 -31.88883 -31.40755 -28.08841 -25.88660 -24.26407 -24.12030 -22.31410 -21.40946 -20.74442 -18.93175 -18.45147 -18.01596 -16.96743 -16.55665 -16.42218 -16.03685 -15.56180 -15.23797 -14.98319 -14.60738 -14.48868 -14.36243 -14.25882 -13.79661 -13.42457 -13.29439 -12.77446 -12.52569 -12.28379 -12.25697 -11.81420 -11.70201 -11.67510 -11.54668 -11.53876 -11.23769 -10.97328 -10.47829 -10.31446 -9.83717 -9.60621 -8.13102 -6.23312 1.42195 1.44984 1.52011 1.54741 1.67094 2.45174 3.19898 3.30848 3.55561 3.76142 3.85861 3.94560 4.03119 4.10178 4.17423 4.29404 4.31410 4.49630 4.52910 4.77493 4.79928 4.81055 4.88237 4.93765 5.06284 5.15550 5.22505 5.24899 5.41718 5.57704 5.81759 5.85262 5.99586 6.06875 6.21000 6.31365 6.37662 6.53144 6.95200 7.44652 7.48457 8.97916 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.030306 B = 0.004105 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.699066 B = 6819.647569 C = 7381.394041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.959 3.041 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.545 4.545 8 H 0.055 0.945 9 C 0.039 3.961 10 C -0.081 4.081 11 C 0.093 3.907 12 H 0.113 0.887 13 N -0.816 5.816 14 C 0.507 3.493 15 O -0.563 6.563 16 N -0.573 5.573 17 N -0.321 5.321 18 C 0.035 3.965 19 C -0.111 4.111 20 C -0.119 4.119 21 C -0.111 4.111 22 C 0.037 3.963 23 H 0.262 0.738 24 H -0.005 1.005 25 H 0.007 0.993 26 H 0.042 0.958 27 H 0.066 0.934 28 H 0.347 0.653 29 H 0.346 0.654 30 H 0.393 0.607 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.357 -18.688 -8.668 22.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.784 3.216 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.583 4.583 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.119 4.119 11 C -0.024 4.024 12 H 0.131 0.869 13 N -0.345 5.345 14 C 0.292 3.708 15 O -0.440 6.440 16 N -0.318 5.318 17 N -0.139 5.139 18 C -0.092 4.092 19 C -0.150 4.150 20 C -0.156 4.156 21 C -0.149 4.149 22 C -0.090 4.090 23 H 0.071 0.929 24 H 0.014 0.986 25 H 0.025 0.975 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.161 0.839 29 H 0.159 0.841 30 H 0.233 0.767 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.113 -18.508 -7.700 22.020 hybrid contribution 0.498 0.695 -0.825 1.188 sum 9.611 -17.813 -8.524 21.963 Atomic orbital electron populations 1.70096 1.07614 1.27583 1.51666 1.25894 0.95695 1.02986 0.94973 0.85600 0.78344 0.78650 0.79027 1.19103 1.20920 1.19639 1.21710 0.93349 0.92773 1.50498 0.92663 1.18828 0.93860 0.91215 0.95885 1.21389 0.97735 0.92055 1.00758 1.21615 0.93498 0.91583 0.95750 0.86922 1.59017 1.27007 1.45265 1.03172 1.22483 0.81297 0.84869 0.82118 1.90618 1.60947 1.54586 1.37805 1.45472 1.44447 1.31800 1.10037 1.62858 0.97792 1.01742 1.51552 1.22663 0.88604 0.98785 0.99161 1.21572 0.97771 0.94809 1.00829 1.21612 0.96381 0.98545 0.99102 1.21574 0.94933 0.96054 1.02368 1.22674 0.99409 0.92333 0.94627 0.92916 0.98618 0.97477 0.93906 0.91576 0.83915 0.84058 0.76674 0.92888 0.92018 0.92212 0.89305 0.89949 0.91005 0.92156 0.88887 0.91084 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.96 44.37 29.54 68.60 2.03 46.39 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.55 -30.93 9.11 25.60 0.23 -30.70 16 8 H 0.06 3.02 7.74 -2.91 -0.02 2.99 16 9 C 0.04 2.04 4.86 29.85 0.15 2.18 16 10 C -0.08 -3.26 4.78 30.60 0.15 -3.11 16 11 C 0.09 3.08 3.15 44.17 0.14 3.22 16 12 H 0.11 3.40 8.14 -2.38 -0.02 3.38 16 13 N -0.82 -27.74 8.44 -171.79 -1.45 -29.19 16 14 C 0.51 16.32 7.17 87.66 0.63 16.95 16 15 O -0.56 -21.99 16.57 -3.02 -0.05 -22.04 16 16 N -0.57 -14.89 4.77 -173.54 -0.83 -15.72 16 17 N -0.32 -7.86 4.50 -514.01 -2.31 -10.18 16 18 C 0.04 0.74 5.83 86.33 0.50 1.24 16 19 C -0.11 -1.81 6.09 30.65 0.19 -1.62 16 20 C -0.12 -1.49 6.00 30.67 0.18 -1.30 16 21 C -0.11 -1.62 6.09 30.64 0.19 -1.43 16 22 C 0.04 0.68 5.83 86.32 0.50 1.19 16 23 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 24 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 25 H 0.01 0.39 7.75 -2.38 -0.02 0.37 16 26 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.35 10.14 9.06 -89.70 -0.81 9.33 16 29 H 0.35 12.12 8.58 -89.69 -0.77 11.35 16 30 H 0.39 8.40 8.83 -215.50 -1.90 6.50 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -70.41 327.08 -1.46 -71.87 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: -2.45 Total: 27.98 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: 3.32 Total: -12.79 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -4.31 Total: -111.42 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.05 Total: -22.04 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -70.41 -1.46 -71.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691540851.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.627 kcal (2) G-P(sol) polarization free energy of solvation -70.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds