Wall clock time and date at job start Mon Mar 30 2020 04:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45204 * 109.46935 * 2 1 4 4 C 1.34228 * 116.99880 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00042 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00104 * 180.02562 * 4 3 2 7 7 C 1.52998 * 109.52597 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.46993 * 299.99827 * 7 6 4 9 9 C 1.52994 * 109.47245 * 179.97438 * 7 6 4 10 10 C 1.50704 * 109.46719 * 59.99698 * 7 6 4 11 11 H 1.07993 * 120.00328 * 34.96096 * 10 7 6 12 12 C 1.37885 * 119.99566 * 214.95304 * 10 7 6 13 13 N 1.31516 * 119.99742 * 184.85444 * 12 10 7 14 14 Si 1.86798 * 120.00102 * 4.85576 * 12 10 7 15 15 H 1.48497 * 109.47030 * 84.73541 * 14 12 10 16 16 H 1.48500 * 109.46755 * 204.73406 * 14 12 10 17 17 H 1.48501 * 109.47212 * 324.73773 * 14 12 10 18 18 C 1.53125 * 109.52256 * 300.12715 * 6 4 3 19 19 C 1.53051 * 109.27453 * 62.37424 * 18 6 4 20 20 N 1.46843 * 109.57021 * 59.08669 * 19 18 6 21 21 C 1.46849 * 111.20302 * 298.28592 * 20 19 18 22 22 C 1.53037 * 109.52055 * 61.74495 * 21 20 19 23 23 H 1.08998 * 109.46791 * 60.00385 * 1 2 3 24 24 H 1.09000 * 109.46934 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47372 * 300.00220 * 1 2 3 26 26 H 1.08998 * 109.47372 * 239.99780 * 2 1 3 27 27 H 1.08998 * 109.46791 * 119.99615 * 2 1 3 28 28 H 1.09002 * 109.47218 * 55.37117 * 9 7 6 29 29 H 1.09005 * 109.47139 * 175.36669 * 9 7 6 30 30 H 1.08998 * 109.47637 * 295.36721 * 9 7 6 31 31 H 0.96996 * 120.00100 * 180.02562 * 13 12 10 32 32 H 1.08997 * 109.50697 * 182.25476 * 18 6 4 33 33 H 1.09000 * 109.49986 * 302.37842 * 18 6 4 34 34 H 1.09000 * 109.40700 * 299.07187 * 19 18 6 35 35 H 1.08996 * 109.45077 * 179.12972 * 19 18 6 36 36 H 1.00901 * 110.99589 * 174.18977 * 20 19 18 37 37 H 1.09002 * 109.45783 * 301.73465 * 21 20 19 38 38 H 1.08996 * 109.45437 * 181.75369 * 21 20 19 39 39 H 1.08993 * 109.50282 * 180.88321 * 22 21 20 40 40 H 1.08995 * 109.50126 * 60.76217 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9207 2.9374 0.0012 7 6 5.4487 2.8588 0.0023 8 1 5.7844 2.3269 0.8925 9 6 6.0322 4.2731 0.0023 10 6 5.9147 2.1236 -1.2279 11 1 5.3777 2.2332 -2.1584 12 6 7.0269 1.3110 -1.1654 13 7 7.4901 0.7451 -2.2585 14 14 7.8758 1.0139 0.4719 15 1 7.1948 -0.0942 1.1885 16 1 9.2960 0.6509 0.2343 17 1 7.8112 2.2487 1.2942 18 6 3.4474 3.6875 -1.2471 19 6 1.9229 3.8175 -1.2106 20 7 1.5199 4.5419 0.0015 21 6 1.9220 3.8156 1.2128 22 6 3.4465 3.6868 1.2494 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.6302 4.8320 0.8475 29 1 7.1176 4.2184 0.0862 30 1 5.7645 4.7767 -0.9266 31 1 8.2723 0.1732 -2.2145 32 1 3.8961 4.6807 -1.2669 33 1 3.7452 3.1351 -2.1383 34 1 1.4746 2.8240 -1.2059 35 1 1.5841 4.3647 -2.0903 36 1 0.5272 4.7230 0.0012 37 1 1.4737 2.8220 1.2060 38 1 1.5824 4.3614 2.0930 39 1 3.7437 3.1340 2.1405 40 1 3.8951 4.6800 1.2700 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691809783.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:58 Heat of formation + Delta-G solvation = -111.466040 kcal Electronic energy + Delta-G solvation = -21184.411865 eV Core-core repulsion = 18191.100795 eV Total energy + Delta-G solvation = -2993.311069 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.05017 -39.26668 -37.72643 -35.94118 -33.97375 -32.59075 -31.75433 -30.81550 -27.42682 -25.91639 -24.40952 -23.91579 -22.56001 -21.73261 -19.90808 -18.90733 -18.32080 -17.62514 -17.36292 -16.81968 -15.95412 -15.42623 -15.27027 -14.95680 -14.91590 -14.66410 -14.27890 -13.99323 -13.68107 -13.62569 -13.09938 -12.99685 -12.85449 -12.80741 -12.69134 -12.47751 -12.26046 -12.09418 -11.96489 -11.69441 -11.52740 -11.26334 -11.06688 -10.80239 -10.64347 -10.54678 -9.14295 -8.20844 -6.16891 1.28587 1.35338 1.39281 1.48978 1.84247 2.39775 3.19297 3.48351 3.82795 3.87450 3.93164 3.99804 4.13787 4.25251 4.36792 4.40954 4.56823 4.63131 4.71036 4.80478 4.83286 4.84572 4.92063 4.99408 5.05690 5.10887 5.12179 5.18059 5.23275 5.31621 5.41001 5.43965 5.61054 5.77753 5.80290 6.19135 6.34475 6.73054 6.82732 7.07618 7.46405 8.96778 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.021499 B = 0.009479 C = 0.007828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.099637 B = 2953.170793 C = 3575.950315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.042 3.958 3 O -0.345 6.345 4 C 0.463 3.537 5 O -0.521 6.521 6 C -0.032 4.032 7 C 0.021 3.979 8 H 0.021 0.979 9 C -0.133 4.133 10 C -0.474 4.474 11 H 0.037 0.963 12 C 0.017 3.983 13 N -0.957 5.957 14 Si 0.927 3.073 15 H -0.288 1.288 16 H -0.292 1.292 17 H -0.239 1.239 18 C -0.094 4.094 19 C 0.053 3.947 20 N -0.679 5.679 21 C 0.052 3.948 22 C -0.110 4.110 23 H 0.068 0.932 24 H 0.095 0.905 25 H 0.075 0.925 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.033 0.967 30 H 0.054 0.946 31 H 0.258 0.742 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.045 0.955 35 H 0.084 0.916 36 H 0.353 0.647 37 H 0.047 0.953 38 H 0.095 0.905 39 H 0.063 0.937 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.366 6.299 8.194 19.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.032 4.032 3 O -0.263 6.263 4 C 0.306 3.694 5 O -0.407 6.407 6 C -0.033 4.033 7 C 0.002 3.998 8 H 0.039 0.961 9 C -0.190 4.190 10 C -0.512 4.512 11 H 0.055 0.945 12 C -0.178 4.178 13 N -0.599 5.599 14 Si 0.753 3.247 15 H -0.214 1.214 16 H -0.218 1.218 17 H -0.163 1.163 18 C -0.132 4.132 19 C -0.076 4.076 20 N -0.312 5.312 21 C -0.077 4.077 22 C -0.147 4.147 23 H 0.087 0.913 24 H 0.113 0.887 25 H 0.094 0.906 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.172 0.828 37 H 0.065 0.935 38 H 0.113 0.887 39 H 0.081 0.919 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.483 6.277 8.137 18.583 hybrid contribution 0.578 -1.950 0.066 2.035 sum -14.905 4.327 8.204 17.555 Atomic orbital electron populations 1.21748 0.89511 1.04144 1.03745 1.23187 0.97576 0.81184 1.01238 1.86722 1.24023 1.31490 1.84080 1.24279 0.80325 0.93264 0.71545 1.90686 1.61095 1.44212 1.44750 1.20730 0.96284 0.87169 0.99124 1.19109 0.90096 0.95040 0.95567 0.96073 1.21987 0.99498 0.96343 1.01209 1.21038 1.10115 1.24686 0.95404 0.94484 1.25653 0.98072 0.95530 0.98555 1.70038 1.25553 1.34785 1.29560 0.86054 0.76824 0.79613 0.82169 1.21448 1.21835 1.16266 1.21535 0.96380 1.00291 0.94951 1.22098 0.94185 0.97674 0.93647 1.60255 1.21682 1.48077 1.01142 1.22129 0.94032 0.97931 0.93575 1.21799 0.97304 1.01181 0.94466 0.91342 0.88668 0.90618 0.93547 0.92348 0.91534 0.94785 0.92710 0.93318 0.89427 0.93809 0.93744 0.89791 0.82791 0.93501 0.88706 0.91866 0.88443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 10.29 71.98 0.74 -1.75 16 2 C 0.04 1.23 6.19 71.98 0.45 1.67 16 3 O -0.35 -11.51 4.52 -51.39 -0.23 -11.74 16 4 C 0.46 19.56 6.20 71.23 0.44 20.01 16 5 O -0.52 -27.33 14.55 21.98 0.32 -27.01 16 6 C -0.03 -1.22 0.31 -52.85 -0.02 -1.24 16 7 C 0.02 0.97 0.99 -11.54 -0.01 0.96 16 8 H 0.02 1.04 5.26 -2.39 -0.01 1.03 16 9 C -0.13 -5.25 8.46 71.98 0.61 -4.65 16 10 C -0.47 -27.35 6.70 25.60 0.17 -27.18 16 11 H 0.04 2.35 6.39 -2.91 -0.02 2.33 16 12 C 0.02 1.05 5.47 84.66 0.46 1.52 16 13 N -0.96 -63.09 13.96 21.45 0.30 -62.79 16 14 Si 0.93 48.40 26.98 68.60 1.85 50.25 16 15 H -0.29 -15.48 7.11 99.48 0.71 -14.77 16 16 H -0.29 -14.93 7.11 99.48 0.71 -14.22 16 17 H -0.24 -11.24 6.83 99.48 0.68 -10.56 16 18 C -0.09 -3.34 4.29 30.65 0.13 -3.21 16 19 C 0.05 1.46 6.29 86.33 0.54 2.00 16 20 N -0.68 -15.45 6.85 -513.99 -3.52 -18.97 16 21 C 0.05 1.24 6.29 86.33 0.54 1.78 16 22 C -0.11 -3.26 4.59 30.65 0.14 -3.12 16 23 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.09 1.37 8.14 -2.39 -0.02 1.36 16 25 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.05 1.52 8.13 -2.39 -0.02 1.50 16 27 H 0.06 1.74 8.13 -2.39 -0.02 1.72 16 28 H 0.07 2.13 6.14 -2.39 -0.01 2.11 16 29 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.05 2.11 6.64 -2.39 -0.02 2.09 16 31 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 32 H 0.09 2.98 6.42 -2.39 -0.02 2.97 16 33 H 0.04 1.86 6.42 -2.39 -0.02 1.84 16 34 H 0.04 1.30 5.41 -2.39 -0.01 1.29 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.35 6.10 8.90 -89.69 -0.80 5.30 16 37 H 0.05 1.19 5.41 -2.39 -0.01 1.18 16 38 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.10 2.69 6.21 -2.39 -0.01 2.67 16 Total: -1.00 -73.99 298.73 3.14 -70.86 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.22 Total: 12.61 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 4.20 Total: -13.21 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -3.22 Total: -81.76 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: 0.09 Total: -38.76 kcal Atomic # 14 Polarization: 48.40 SS G_CDS: 1.85 Total: 50.25 kcal Total: -73.99 3.14 -70.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691809783.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.609 kcal (2) G-P(sol) polarization free energy of solvation -73.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds