Wall clock time and date at job start Mon Mar 30 2020 04:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45198 * 109.47335 * 2 1 4 4 C 1.34221 * 117.00435 * 179.97438 * 3 2 1 5 5 O 1.20834 * 120.00211 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00588 * 180.27240 * 4 3 2 7 7 H 1.09010 * 110.36232 * 59.02899 * 6 4 3 8 8 C 1.54377 * 110.41386 * 296.68511 * 6 4 3 9 9 C 1.54261 * 105.05842 * 217.36334 * 8 6 4 10 10 C 1.54377 * 105.06065 * 359.97438 * 9 8 6 11 11 N 1.48561 * 110.41690 * 181.37519 * 6 4 3 12 12 C 1.46895 * 110.99972 * 277.82473 * 11 6 4 13 13 H 1.08991 * 109.47552 * 52.96927 * 12 11 6 14 14 C 1.52998 * 109.47129 * 292.96490 * 12 11 6 15 15 C 1.52999 * 109.46876 * 172.96825 * 12 11 6 16 16 C 1.50700 * 109.47100 * 295.00005 * 15 12 11 17 17 H 1.07999 * 119.99896 * 359.97438 * 16 15 12 18 18 C 1.37882 * 120.00080 * 180.02562 * 16 15 12 19 19 N 1.31515 * 119.99973 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00002 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47354 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47276 * 119.99765 * 20 18 16 23 23 H 1.48498 * 109.47158 * 240.00033 * 20 18 16 24 24 H 1.08996 * 109.46880 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46909 * 300.00410 * 1 2 3 26 26 H 1.09001 * 109.46312 * 60.00189 * 1 2 3 27 27 H 1.09003 * 109.47338 * 240.00106 * 2 1 3 28 28 H 1.09001 * 109.47174 * 120.00121 * 2 1 3 29 29 H 1.09000 * 110.31976 * 336.25509 * 8 6 4 30 30 H 1.08998 * 110.33163 * 98.46635 * 8 6 4 31 31 H 1.09005 * 110.32684 * 118.89122 * 9 8 6 32 32 H 1.09004 * 110.32591 * 241.09958 * 9 8 6 33 33 H 1.09008 * 110.41167 * 142.63087 * 10 9 8 34 34 H 1.09001 * 110.41140 * 264.95221 * 10 9 8 35 35 H 1.08998 * 109.47179 * 52.52810 * 14 12 11 36 36 H 1.08998 * 109.47169 * 172.53180 * 14 12 11 37 37 H 1.09007 * 109.46996 * 292.52532 * 14 12 11 38 38 H 1.08996 * 109.47472 * 54.99873 * 15 12 11 39 39 H 1.09002 * 109.47490 * 175.00008 * 15 12 11 40 40 H 0.96992 * 119.99919 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0809 0.5866 0.0005 6 6 3.9208 2.9374 0.0068 7 1 3.5800 3.4849 0.8856 8 6 3.5260 3.6892 -1.2824 9 6 4.7654 4.5302 -1.6515 10 6 5.8045 4.2162 -0.5538 11 7 5.4051 2.8843 -0.0272 12 6 5.9547 2.6603 1.3165 13 1 5.4855 1.7818 1.7592 14 6 5.6755 3.8834 2.1922 15 6 7.4652 2.4371 1.2189 16 6 7.7368 1.1640 0.4597 17 1 6.9144 0.5730 0.0847 18 6 9.0353 0.7532 0.2447 19 7 10.0369 1.4726 0.7018 20 14 9.3720 -0.8253 -0.6958 21 1 8.0844 -1.4453 -1.0994 22 1 10.1752 -0.5184 -1.9065 23 1 10.1240 -1.7674 0.1714 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.2983 2.9809 -2.0790 30 1 2.6703 4.3380 -1.0955 31 1 5.1461 4.2347 -2.6292 32 1 4.5181 5.5918 -1.6456 33 1 6.8066 4.1715 -0.9805 34 1 5.7617 4.9663 0.2360 35 1 4.6126 4.1221 2.1548 36 1 5.9633 3.6671 3.2210 37 1 6.2517 4.7326 1.8247 38 1 7.9235 3.2766 0.6963 39 1 7.8865 2.3593 2.2212 40 1 10.9503 1.1838 0.5503 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695817324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:12 Heat of formation + Delta-G solvation = -82.683897 kcal Electronic energy + Delta-G solvation = -20129.514193 eV Core-core repulsion = 17137.451211 eV Total energy + Delta-G solvation = -2992.062982 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.39178 -38.63072 -36.09706 -34.23860 -32.12461 -31.73986 -29.38597 -28.47000 -27.27175 -24.09133 -23.23151 -22.19328 -21.32275 -20.14095 -18.64884 -17.38314 -16.45549 -16.15569 -15.99573 -15.73795 -14.35179 -14.33264 -13.99185 -13.58634 -13.37757 -13.21431 -12.87883 -12.44122 -12.30940 -11.96205 -11.76000 -11.63498 -11.56729 -11.32578 -11.23546 -10.86603 -10.85149 -10.57281 -10.39901 -10.37594 -10.24548 -9.88104 -9.80650 -9.13888 -8.86387 -8.16872 -7.70159 -5.78906 -3.74598 2.64085 2.80064 3.45911 3.52692 3.63155 4.52000 4.67657 4.78900 4.79672 4.90790 4.97862 5.12084 5.21847 5.28224 5.39243 5.58763 5.63789 5.71119 5.75049 5.77697 5.81511 5.86868 5.89758 5.95912 5.98351 6.09276 6.33592 6.40646 6.55733 6.67237 6.70222 6.98842 7.41053 7.48348 7.86333 7.97516 8.20454 8.26530 8.70028 9.35668 9.87092 11.33525 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.017878 B = 0.007099 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.761485 B = 3943.454421 C = 4772.835627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.368 6.368 4 C 0.461 3.539 5 O -0.466 6.466 6 C 0.062 3.938 7 H 0.083 0.917 8 C -0.107 4.107 9 C -0.124 4.124 10 C 0.030 3.970 11 N -0.459 5.459 12 C 0.075 3.925 13 H 0.072 0.928 14 C -0.188 4.188 15 C 0.035 3.965 16 C -0.483 4.483 17 H 0.069 0.931 18 C 0.048 3.952 19 N -0.908 5.908 20 Si 0.887 3.113 21 H -0.272 1.272 22 H -0.288 1.288 23 H -0.289 1.289 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.051 0.949 35 H 0.041 0.959 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.018 0.982 39 H 0.019 0.981 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.748 5.010 -1.755 18.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.286 6.286 4 C 0.300 3.700 5 O -0.349 6.349 6 C -0.048 4.048 7 H 0.101 0.899 8 C -0.145 4.145 9 C -0.162 4.162 10 C -0.097 4.097 11 N -0.183 5.183 12 C -0.033 4.033 13 H 0.090 0.910 14 C -0.247 4.247 15 C -0.002 4.002 16 C -0.522 4.522 17 H 0.087 0.913 18 C -0.150 4.150 19 N -0.550 5.550 20 Si 0.716 3.284 21 H -0.197 1.197 22 H -0.214 1.214 23 H -0.215 1.215 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.036 0.964 39 H 0.037 0.963 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.145 4.207 -2.080 17.776 hybrid contribution 0.097 -0.474 0.107 0.496 sum -17.048 3.733 -1.972 17.563 Atomic orbital electron populations 1.21782 0.93000 1.02653 1.03235 1.22932 0.94901 0.80891 1.02604 1.86469 1.25306 1.31817 1.85032 1.23549 0.80054 0.92774 0.73598 1.90760 1.59795 1.42273 1.42041 1.22287 0.93184 0.89189 1.00183 0.89934 1.22176 0.98309 0.98407 0.95584 1.22325 0.94875 0.98923 1.00049 1.23215 1.00139 0.89995 0.96335 1.65384 1.00237 1.28405 1.24292 1.22127 1.00790 0.95156 0.85272 0.90953 1.22584 0.99700 1.00935 1.01468 1.19114 0.86326 0.97638 0.97091 1.21349 0.91879 1.06495 1.32488 0.91316 1.24991 0.96529 0.97028 0.96483 1.69980 0.98502 1.38800 1.47736 0.86589 0.78075 0.84099 0.79622 1.19658 1.21440 1.21529 0.90527 0.91666 0.91656 0.91405 0.91424 0.90971 0.90658 0.90838 0.91438 0.88927 0.93136 0.94052 0.92246 0.92147 0.96382 0.96325 0.93573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.29 37.16 0.38 -0.91 16 2 C 0.06 0.76 6.19 37.16 0.23 0.99 16 3 O -0.37 -5.46 10.21 -39.23 -0.40 -5.86 16 4 C 0.46 8.21 6.94 36.01 0.25 8.46 16 5 O -0.47 -10.32 15.55 -18.76 -0.29 -10.61 16 6 C 0.06 1.00 2.65 -67.22 -0.18 0.82 16 7 H 0.08 1.21 5.97 -51.92 -0.31 0.90 16 8 C -0.11 -1.40 6.54 -25.35 -0.17 -1.56 16 9 C -0.12 -1.63 7.00 -25.35 -0.18 -1.81 16 10 C 0.03 0.51 5.54 -2.11 -0.01 0.50 16 11 N -0.46 -9.06 4.34 -215.49 -0.93 -10.00 16 12 C 0.07 1.59 2.10 -67.72 -0.14 1.45 16 13 H 0.07 1.67 7.36 -51.93 -0.38 1.29 16 14 C -0.19 -3.21 8.18 37.16 0.30 -2.90 16 15 C 0.04 0.93 4.46 -27.88 -0.12 0.81 16 16 C -0.48 -14.32 8.84 -34.44 -0.30 -14.63 16 17 H 0.07 2.13 7.74 -52.49 -0.41 1.72 16 18 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 19 N -0.91 -28.22 13.29 55.43 0.74 -27.48 16 20 Si 0.89 23.34 29.54 -169.99 -5.02 18.32 16 21 H -0.27 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 23 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.87 8.13 -51.93 -0.42 0.44 16 28 H 0.07 0.87 8.13 -51.93 -0.42 0.44 16 29 H 0.07 0.97 7.85 -51.93 -0.41 0.57 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.75 7.68 -51.92 -0.40 1.35 16 34 H 0.05 0.78 5.39 -51.93 -0.28 0.50 16 35 H 0.04 0.60 6.10 -51.93 -0.32 0.29 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 1.00 6.38 -51.93 -0.33 0.67 16 38 H 0.02 0.49 7.14 -51.93 -0.37 0.12 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 319.77 15.07 4.82 4.82 Total: -1.00 -33.83 319.77 -7.69 -41.53 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -6.57 Total: -3.28 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -0.04 Total: -7.44 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: -0.20 Total: -37.48 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.69 Total: -16.47 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.02 Total: 18.32 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.83 -7.69 -41.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695817324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.156 kcal (2) G-P(sol) polarization free energy of solvation -33.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds