Wall clock time and date at job start Mon Mar 30 2020 04:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45198 * 109.47335 * 2 1 4 4 C 1.34221 * 117.00435 * 179.97438 * 3 2 1 5 5 O 1.20834 * 120.00211 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00588 * 180.27240 * 4 3 2 7 7 H 1.09010 * 110.36232 * 59.02899 * 6 4 3 8 8 C 1.54377 * 110.41386 * 296.68511 * 6 4 3 9 9 C 1.54261 * 105.05842 * 217.36334 * 8 6 4 10 10 C 1.54377 * 105.06065 * 359.97438 * 9 8 6 11 11 N 1.48561 * 110.41690 * 181.37519 * 6 4 3 12 12 C 1.46895 * 110.99972 * 277.82473 * 11 6 4 13 13 H 1.08991 * 109.47552 * 52.96927 * 12 11 6 14 14 C 1.52998 * 109.47129 * 292.96490 * 12 11 6 15 15 C 1.52999 * 109.46876 * 172.96825 * 12 11 6 16 16 C 1.50700 * 109.47100 * 295.00005 * 15 12 11 17 17 H 1.07999 * 119.99896 * 359.97438 * 16 15 12 18 18 C 1.37882 * 120.00080 * 180.02562 * 16 15 12 19 19 N 1.31515 * 119.99973 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00002 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47354 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47276 * 119.99765 * 20 18 16 23 23 H 1.48498 * 109.47158 * 240.00033 * 20 18 16 24 24 H 1.08996 * 109.46880 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46909 * 300.00410 * 1 2 3 26 26 H 1.09001 * 109.46312 * 60.00189 * 1 2 3 27 27 H 1.09003 * 109.47338 * 240.00106 * 2 1 3 28 28 H 1.09001 * 109.47174 * 120.00121 * 2 1 3 29 29 H 1.09000 * 110.31976 * 336.25509 * 8 6 4 30 30 H 1.08998 * 110.33163 * 98.46635 * 8 6 4 31 31 H 1.09005 * 110.32684 * 118.89122 * 9 8 6 32 32 H 1.09004 * 110.32591 * 241.09958 * 9 8 6 33 33 H 1.09008 * 110.41167 * 142.63087 * 10 9 8 34 34 H 1.09001 * 110.41140 * 264.95221 * 10 9 8 35 35 H 1.08998 * 109.47179 * 52.52810 * 14 12 11 36 36 H 1.08998 * 109.47169 * 172.53180 * 14 12 11 37 37 H 1.09007 * 109.46996 * 292.52532 * 14 12 11 38 38 H 1.08996 * 109.47472 * 54.99873 * 15 12 11 39 39 H 1.09002 * 109.47490 * 175.00008 * 15 12 11 40 40 H 0.96992 * 119.99919 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0809 0.5866 0.0005 6 6 3.9208 2.9374 0.0068 7 1 3.5800 3.4849 0.8856 8 6 3.5260 3.6892 -1.2824 9 6 4.7654 4.5302 -1.6515 10 6 5.8045 4.2162 -0.5538 11 7 5.4051 2.8843 -0.0272 12 6 5.9547 2.6603 1.3165 13 1 5.4855 1.7818 1.7592 14 6 5.6755 3.8834 2.1922 15 6 7.4652 2.4371 1.2189 16 6 7.7368 1.1640 0.4597 17 1 6.9144 0.5730 0.0847 18 6 9.0353 0.7532 0.2447 19 7 10.0369 1.4726 0.7018 20 14 9.3720 -0.8253 -0.6958 21 1 8.0844 -1.4453 -1.0994 22 1 10.1752 -0.5184 -1.9065 23 1 10.1240 -1.7674 0.1714 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.2983 2.9809 -2.0790 30 1 2.6703 4.3380 -1.0955 31 1 5.1461 4.2347 -2.6292 32 1 4.5181 5.5918 -1.6456 33 1 6.8066 4.1715 -0.9805 34 1 5.7617 4.9663 0.2360 35 1 4.6126 4.1221 2.1548 36 1 5.9633 3.6671 3.2210 37 1 6.2517 4.7326 1.8247 38 1 7.9235 3.2766 0.6963 39 1 7.8865 2.3593 2.2212 40 1 10.9503 1.1838 0.5503 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695817324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:11 Heat of formation + Delta-G solvation = -104.861303 kcal Electronic energy + Delta-G solvation = -20130.475877 eV Core-core repulsion = 17137.451211 eV Total energy + Delta-G solvation = -2993.024667 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.74297 -39.98543 -37.46572 -35.93905 -34.17669 -32.68927 -30.66317 -30.00937 -29.07207 -25.46500 -24.95873 -23.46479 -22.64360 -21.43039 -20.18999 -18.69056 -18.35936 -17.71764 -17.41340 -17.05282 -16.49297 -15.55304 -15.21650 -15.08891 -14.65329 -14.51009 -14.18635 -13.89524 -13.59922 -13.49452 -13.43927 -12.96692 -12.83501 -12.58365 -12.57577 -12.52466 -12.40595 -12.36444 -12.04127 -11.77685 -11.55834 -11.49980 -11.17962 -11.07863 -11.04134 -10.50211 -9.13186 -8.12398 -6.14867 1.26717 1.34592 1.35030 1.51059 1.60650 2.45243 3.12514 3.25660 3.59565 3.64275 3.95952 4.00609 4.06593 4.13446 4.17657 4.31987 4.35417 4.39732 4.51094 4.61625 4.71281 4.86510 4.89458 4.93651 4.98154 5.07852 5.11802 5.15464 5.20920 5.25805 5.36006 5.43419 5.48161 5.67250 5.88091 6.09369 6.23954 6.47183 6.89322 7.00178 7.50245 8.99840 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.017878 B = 0.007099 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.761485 B = 3943.454421 C = 4772.835627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.051 3.949 3 O -0.357 6.357 4 C 0.462 3.538 5 O -0.522 6.522 6 C 0.060 3.940 7 H 0.108 0.892 8 C -0.098 4.098 9 C -0.114 4.114 10 C 0.028 3.972 11 N -0.497 5.497 12 C 0.085 3.915 13 H 0.046 0.954 14 C -0.177 4.177 15 C 0.043 3.957 16 C -0.495 4.495 17 H 0.048 0.952 18 C -0.002 4.002 19 N -0.937 5.937 20 Si 0.950 3.050 21 H -0.279 1.279 22 H -0.277 1.277 23 H -0.278 1.278 24 H 0.097 0.903 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.116 0.884 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.001 0.999 39 H -0.007 1.007 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.120 6.146 -2.322 21.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.023 4.023 3 O -0.274 6.274 4 C 0.305 3.695 5 O -0.409 6.409 6 C -0.049 4.049 7 H 0.125 0.875 8 C -0.136 4.136 9 C -0.151 4.151 10 C -0.099 4.099 11 N -0.222 5.222 12 C -0.023 4.023 13 H 0.064 0.936 14 C -0.235 4.235 15 C 0.006 3.994 16 C -0.534 4.534 17 H 0.067 0.933 18 C -0.198 4.198 19 N -0.580 5.580 20 Si 0.777 3.223 21 H -0.204 1.204 22 H -0.202 1.202 23 H -0.203 1.203 24 H 0.116 0.884 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.134 0.866 31 H 0.085 0.915 32 H 0.124 0.876 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.020 0.980 39 H 0.011 0.989 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.546 5.362 -2.650 20.441 hybrid contribution 0.794 -0.868 0.286 1.211 sum -18.752 4.494 -2.364 19.427 Atomic orbital electron populations 1.21789 0.89497 1.04337 1.04007 1.23250 0.97548 0.79654 1.01845 1.86470 1.23531 1.33214 1.84187 1.24023 0.80592 0.92974 0.71937 1.90744 1.61198 1.44070 1.44883 1.22456 0.90746 0.88753 1.02959 0.87510 1.22238 0.99505 0.98372 0.93477 1.22312 0.93516 1.01200 0.98122 1.23233 0.99627 0.89120 0.97947 1.65136 1.03022 1.30703 1.23309 1.21702 0.96860 0.96310 0.87439 0.93591 1.22439 1.01910 0.98814 1.00375 1.18940 0.90255 0.95604 0.94638 1.21523 0.91473 1.07623 1.32754 0.93345 1.25753 0.96408 1.00207 0.97438 1.70074 0.98887 1.40326 1.48720 0.85612 0.77594 0.80365 0.78736 1.20375 1.20227 1.20334 0.88402 0.90916 0.90778 0.92227 0.92359 0.91686 0.86570 0.91486 0.87620 0.92411 0.91309 0.90779 0.92136 0.91509 0.98035 0.98900 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 10.29 71.98 0.74 -1.32 16 2 C 0.05 1.23 6.19 71.98 0.45 1.67 16 3 O -0.36 -10.09 10.21 -51.33 -0.52 -10.62 16 4 C 0.46 16.34 6.94 71.24 0.49 16.84 16 5 O -0.52 -23.96 15.55 21.94 0.34 -23.62 16 6 C 0.06 1.85 2.65 44.32 0.12 1.97 16 7 H 0.11 2.75 5.97 -2.38 -0.01 2.74 16 8 C -0.10 -2.24 6.54 31.49 0.21 -2.04 16 9 C -0.11 -2.67 7.00 31.49 0.22 -2.45 16 10 C 0.03 0.90 5.54 86.42 0.48 1.38 16 11 N -0.50 -19.67 4.34 -835.66 -3.62 -23.29 16 12 C 0.09 3.72 2.10 44.92 0.09 3.81 16 13 H 0.05 2.21 7.36 -2.39 -0.02 2.19 16 14 C -0.18 -5.79 8.18 71.98 0.59 -5.20 16 15 C 0.04 2.35 4.46 29.85 0.13 2.49 16 16 C -0.50 -30.58 8.84 25.60 0.23 -30.35 16 17 H 0.05 3.15 7.74 -2.91 -0.02 3.12 16 18 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 19 N -0.94 -59.59 13.29 21.45 0.28 -59.31 16 20 Si 0.95 49.12 29.54 68.60 2.03 51.15 16 21 H -0.28 -14.59 7.11 99.48 0.71 -13.88 16 22 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 24 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.06 1.53 8.13 -2.39 -0.02 1.51 16 28 H 0.06 1.51 8.13 -2.39 -0.02 1.49 16 29 H 0.06 1.59 7.85 -2.39 -0.02 1.58 16 30 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.11 1.72 8.14 -2.39 -0.02 1.71 16 33 H 0.06 2.25 7.68 -2.38 -0.02 2.23 16 34 H 0.07 1.96 5.39 -2.39 -0.01 1.95 16 35 H 0.07 1.93 6.10 -2.39 -0.01 1.92 16 36 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.07 2.10 6.38 -2.38 -0.02 2.08 16 38 H 0.00 0.08 7.14 -2.39 -0.02 0.06 16 39 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 40 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -77.07 319.77 3.72 -73.36 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: 1.00 Total: 5.21 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 4.21 Total: -12.88 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -3.34 Total: -82.60 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -0.18 Total: -34.24 kcal Atomic # 14 Polarization: 49.12 SS G_CDS: 2.03 Total: 51.15 kcal Total: -77.07 3.72 -73.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695817324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.505 kcal (2) G-P(sol) polarization free energy of solvation -77.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds