Wall clock time and date at job start Mon Mar 30 2020 04:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45205 * 109.47108 * 2 1 4 4 C 1.34227 * 116.99809 * 180.02562 * 3 2 1 5 5 O 1.20817 * 120.00415 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99459 * 180.27899 * 4 3 2 7 7 N 1.46900 * 109.47025 * 173.92367 * 6 4 3 8 8 C 1.46897 * 111.00262 * 161.90323 * 7 6 4 9 9 H 1.08998 * 109.46926 * 50.99467 * 8 7 6 10 10 C 1.52994 * 109.47509 * 290.99768 * 8 7 6 11 11 C 1.52998 * 109.47096 * 170.99535 * 8 7 6 12 12 C 1.50702 * 109.46940 * 174.89088 * 11 8 7 13 13 H 1.07996 * 120.00385 * 5.14189 * 12 11 8 14 14 C 1.37884 * 120.00006 * 185.14812 * 12 11 8 15 15 N 1.31519 * 119.99937 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00133 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46685 * 89.99903 * 16 14 12 18 18 H 1.48489 * 109.47083 * 209.99958 * 16 14 12 19 19 H 1.48497 * 109.46970 * 330.00061 * 16 14 12 20 20 C 1.46903 * 111.00061 * 285.86344 * 7 6 4 21 21 C 1.52998 * 117.49506 * 4.49927 * 20 7 6 22 22 C 1.53001 * 117.49378 * 295.87832 * 20 7 6 23 23 H 1.08995 * 109.47389 * 59.99410 * 1 2 3 24 24 H 1.08998 * 109.47037 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46606 * 299.99223 * 1 2 3 26 26 H 1.09005 * 109.46606 * 240.00777 * 2 1 3 27 27 H 1.08995 * 109.47389 * 120.00590 * 2 1 3 28 28 H 1.09000 * 109.47326 * 293.92066 * 6 4 3 29 29 H 1.08993 * 109.47579 * 53.92566 * 6 4 3 30 30 H 1.09006 * 109.47173 * 59.99628 * 10 8 7 31 31 H 1.08993 * 109.47673 * 179.97438 * 10 8 7 32 32 H 1.09011 * 109.46847 * 300.00130 * 10 8 7 33 33 H 1.09001 * 109.47248 * 294.88756 * 11 8 7 34 34 H 1.08991 * 109.47299 * 54.89202 * 11 8 7 35 35 H 0.96992 * 119.99636 * 180.02562 * 15 14 12 36 36 H 1.09000 * 115.55417 * 150.21451 * 20 7 6 37 37 H 1.08998 * 117.50568 * 0.02562 * 21 20 7 38 38 H 1.09002 * 117.49688 * 145.02520 * 21 20 7 39 39 H 1.08999 * 117.49873 * 214.97715 * 22 20 7 40 40 H 1.09005 * 117.50189 * 0.02562 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9375 0.0058 7 7 5.3806 2.8629 0.1505 8 6 6.0154 4.1221 -0.2610 9 1 5.5311 4.9560 0.2470 10 6 5.8727 4.2946 -1.7744 11 6 7.4992 4.0905 0.1110 12 6 8.1770 5.3266 -0.4217 13 1 7.5928 6.1002 -0.8977 14 6 9.5431 5.4698 -0.3015 15 7 10.2545 4.5279 0.2785 16 14 10.3834 7.0017 -0.9625 17 1 10.4310 8.0377 0.1004 18 1 11.7656 6.6639 -1.3868 19 1 9.6212 7.5212 -2.1263 20 6 5.7559 2.5088 1.5259 21 6 4.6261 2.1837 2.5050 22 6 5.3950 3.5002 2.6340 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.6735 3.4372 -0.9309 29 1 3.5013 3.5004 0.8396 30 1 4.8156 4.3170 -2.0395 31 1 6.3433 5.2291 -2.0797 32 1 6.3570 3.4605 -2.2825 33 1 7.6012 4.0592 1.1958 34 1 7.9639 3.2055 -0.3234 35 1 11.2154 4.6289 0.3633 36 1 6.6885 1.9544 1.6309 37 1 3.6043 2.2321 2.1285 38 1 4.8151 1.4150 3.2543 39 1 6.0898 3.5976 3.4681 40 1 4.8787 4.4149 2.3425 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695817351.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:49 Heat of formation + Delta-G solvation = -71.564569 kcal Electronic energy + Delta-G solvation = -19735.789960 eV Core-core repulsion = 16744.209148 eV Total energy + Delta-G solvation = -2991.580812 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.77500 -40.05136 -37.46432 -36.32131 -34.61319 -32.86814 -32.06959 -28.72993 -28.59417 -25.29966 -24.03586 -23.47500 -22.73180 -21.81183 -19.95651 -18.69966 -18.63727 -18.19908 -17.24673 -17.11589 -16.46631 -15.98759 -15.54623 -15.18824 -14.97297 -14.20976 -14.13855 -13.91874 -13.54737 -13.48981 -13.19911 -12.83535 -12.82324 -12.71443 -12.63544 -12.49308 -12.43487 -12.08473 -11.97449 -11.59208 -11.48265 -11.41195 -11.21981 -11.04783 -10.96969 -10.49385 -9.18616 -8.13437 -6.22270 1.25366 1.43151 1.44326 1.54483 1.57706 2.44509 2.77845 3.01819 3.21059 3.73743 3.79751 3.91282 3.97059 4.02772 4.12807 4.13642 4.23174 4.37900 4.40660 4.51286 4.60309 4.70983 4.86592 4.88043 4.95427 5.06007 5.08595 5.13665 5.17244 5.25155 5.46345 5.48722 5.58022 5.68654 5.86480 6.08352 6.14374 6.37055 6.87419 6.94207 7.45510 8.98917 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.039763 B = 0.004634 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.995908 B = 6040.808303 C = 6362.479876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.053 3.947 3 O -0.363 6.363 4 C 0.466 3.534 5 O -0.516 6.516 6 C 0.052 3.948 7 N -0.506 5.506 8 C 0.102 3.898 9 H 0.042 0.958 10 C -0.126 4.126 11 C 0.043 3.957 12 C -0.526 4.526 13 H 0.069 0.931 14 C -0.001 4.001 15 N -0.935 5.935 16 Si 0.960 3.040 17 H -0.274 1.274 18 H -0.289 1.289 19 H -0.260 1.260 20 C 0.024 3.976 21 C -0.173 4.173 22 C -0.199 4.199 23 H 0.069 0.931 24 H 0.099 0.901 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.134 0.866 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.039 0.961 33 H -0.003 1.003 34 H -0.014 1.014 35 H 0.260 0.740 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.755 -4.219 0.970 20.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.020 4.020 3 O -0.281 6.281 4 C 0.308 3.692 5 O -0.403 6.403 6 C -0.077 4.077 7 N -0.230 5.230 8 C -0.004 4.004 9 H 0.060 0.940 10 C -0.183 4.183 11 C 0.006 3.994 12 C -0.565 4.565 13 H 0.087 0.913 14 C -0.198 4.198 15 N -0.575 5.575 16 Si 0.786 3.214 17 H -0.200 1.200 18 H -0.215 1.215 19 H -0.184 1.184 20 C -0.085 4.085 21 C -0.210 4.210 22 C -0.238 4.238 23 H 0.088 0.912 24 H 0.117 0.883 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.152 0.848 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.016 0.984 34 H 0.005 0.995 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.115 0.885 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -19.229 -4.961 0.669 19.869 hybrid contribution 0.964 0.777 0.396 1.300 sum -18.265 -4.184 1.065 18.768 Atomic orbital electron populations 1.21813 0.90125 1.04331 1.03805 1.23260 0.97154 0.79320 1.02300 1.86489 1.23655 1.33673 1.84234 1.23730 0.80597 0.92786 0.72052 1.90662 1.61026 1.43612 1.45010 1.21797 0.89097 0.90485 1.06298 1.61641 1.05933 1.34353 1.21103 1.21599 0.95426 0.87025 0.96388 0.94047 1.21734 1.00767 1.01776 0.94047 1.18939 0.90158 0.95329 0.95014 1.21625 0.92678 1.04629 1.37544 0.91333 1.25921 0.98582 0.99515 0.95797 1.70128 1.06687 1.35390 1.45344 0.85512 0.77528 0.79383 0.79016 1.19992 1.21459 1.18385 1.22467 0.99113 1.02803 0.84146 1.23357 0.96280 0.99458 1.01950 1.23355 1.04107 0.94029 1.02331 0.91156 0.88274 0.91124 0.91773 0.91622 0.84840 0.88760 0.91403 0.91771 0.94186 0.98438 0.99514 0.93130 0.88804 0.88358 0.87635 0.88492 0.88288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 10.29 71.98 0.74 -1.00 16 2 C 0.05 1.04 6.19 71.98 0.45 1.48 16 3 O -0.36 -8.81 10.22 -51.39 -0.53 -9.33 16 4 C 0.47 13.80 5.80 71.24 0.41 14.22 16 5 O -0.52 -19.03 15.43 21.99 0.34 -18.69 16 6 C 0.05 1.46 4.96 85.56 0.42 1.89 16 7 N -0.51 -18.74 4.15 -850.43 -3.53 -22.28 16 8 C 0.10 4.11 1.89 44.91 0.09 4.20 16 9 H 0.04 1.59 7.56 -2.39 -0.02 1.57 16 10 C -0.13 -4.63 8.88 71.98 0.64 -3.99 16 11 C 0.04 2.25 4.02 29.85 0.12 2.37 16 12 C -0.53 -28.96 8.26 25.60 0.21 -28.75 16 13 H 0.07 3.54 6.56 -2.91 -0.02 3.52 16 14 C 0.00 -0.05 5.46 84.66 0.46 0.42 16 15 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 16 Si 0.96 43.95 29.54 68.60 2.03 45.97 16 17 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 19 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 20 C 0.02 0.88 4.06 44.91 0.18 1.06 16 21 C -0.17 -5.01 8.69 30.59 0.27 -4.74 16 22 C -0.20 -6.26 8.97 30.60 0.27 -5.99 16 23 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 24 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.06 1.30 8.13 -2.38 -0.02 1.28 16 27 H 0.07 1.31 8.13 -2.39 -0.02 1.29 16 28 H 0.13 3.25 6.08 -2.39 -0.01 3.24 16 29 H 0.09 2.30 5.95 -2.39 -0.01 2.29 16 30 H 0.07 1.93 6.39 -2.38 -0.02 1.92 16 31 H 0.06 2.45 6.41 -2.39 -0.02 2.44 16 32 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.00 -0.15 6.74 -2.39 -0.02 -0.17 16 34 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 35 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 36 H 0.09 4.04 8.09 -2.39 -0.02 4.02 16 37 H 0.10 2.59 4.91 -2.39 -0.01 2.58 16 38 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 39 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 40 H 0.10 2.93 7.34 -2.38 -0.02 2.92 16 Total: -1.00 -68.34 319.05 3.87 -64.47 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 1.01 Total: 15.72 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: 4.26 Total: -18.84 kcal Atomic # 7 Polarization: -76.05 SS G_CDS: -3.25 Total: -79.30 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.19 Total: -28.02 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -68.34 3.87 -64.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695817351.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.096 kcal (2) G-P(sol) polarization free energy of solvation -68.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds