Wall clock time and date at job start Mon Mar 30 2020 05:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00260 * 2 1 4 4 H 1.48497 * 109.47411 * 270.00220 * 3 2 1 5 5 H 1.48504 * 109.46894 * 30.00030 * 3 2 1 6 6 H 1.48499 * 109.47454 * 150.00159 * 3 2 1 7 7 C 1.37871 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00036 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46889 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46788 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47242 * 55.00016 * 11 10 9 13 13 N 1.46900 * 109.47324 * 295.00291 * 11 10 9 14 14 C 1.50694 * 109.47070 * 175.00301 * 11 10 9 15 15 O 1.21283 * 120.00363 * 99.99964 * 14 11 10 16 16 N 1.34784 * 119.99988 * 280.00082 * 14 11 10 17 17 C 1.46493 * 119.99864 * 179.72721 * 16 14 11 18 18 C 1.53001 * 109.47084 * 180.02562 * 17 16 14 19 19 N 1.46896 * 109.47228 * 179.97438 * 18 17 16 20 20 C 1.47485 * 110.99964 * 74.02759 * 19 18 17 21 21 C 1.53513 * 87.93321 * 138.70535 * 20 19 18 22 22 C 1.47483 * 111.00150 * 169.99592 * 19 18 17 23 23 H 0.97004 * 119.99887 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.46890 * 60.00372 * 9 7 2 25 25 H 1.08994 * 109.46941 * 299.99565 * 9 7 2 26 26 H 1.08996 * 109.46833 * 60.00605 * 10 9 7 27 27 H 1.08994 * 109.47192 * 299.99679 * 10 9 7 28 28 H 1.00898 * 111.00354 * 176.04606 * 13 11 10 29 29 H 1.00900 * 110.99611 * 300.00476 * 13 11 10 30 30 H 0.97000 * 119.99339 * 0.02562 * 16 14 11 31 31 H 1.09007 * 109.47196 * 299.99538 * 17 16 14 32 32 H 1.09006 * 109.47678 * 59.99732 * 17 16 14 33 33 H 1.09007 * 109.46593 * 299.99743 * 18 17 16 34 34 H 1.08993 * 109.47372 * 59.99485 * 18 17 16 35 35 H 1.09004 * 113.47338 * 253.46671 * 20 19 18 36 36 H 1.08992 * 113.47636 * 23.93867 * 20 19 18 37 37 H 1.08999 * 114.17299 * 220.33308 * 21 20 19 38 38 H 1.09001 * 114.35039 * 87.62826 * 21 20 19 39 39 H 1.09004 * 113.47279 * 336.06267 * 22 19 18 40 40 H 1.09000 * 113.47564 * 106.52573 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 6 1.4802 -4.9871 -0.0033 12 1 0.7878 -5.0065 -0.8449 13 7 0.7288 -5.1193 1.2521 14 6 2.4547 -6.1297 -0.1281 15 8 2.7869 -6.7539 0.8574 16 7 2.9573 -6.4581 -1.3348 17 6 3.9092 -7.5651 -1.4552 18 6 4.3210 -7.7266 -2.9199 19 7 5.2760 -8.8362 -3.0406 20 6 4.5955 -10.1370 -2.8994 21 6 5.4708 -10.6569 -4.0483 22 6 5.5138 -9.1774 -4.4556 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5563 -0.8920 25 1 0.6240 -2.5575 0.8880 26 1 2.8718 -3.6051 0.8873 27 1 2.8718 -3.6036 -0.8927 28 1 0.1644 -5.9556 1.2494 29 1 1.3489 -5.1039 2.0479 30 1 2.6919 -5.9587 -2.1228 31 1 4.7916 -7.3528 -0.8514 32 1 3.4422 -8.4857 -1.1051 33 1 3.4388 -7.9387 -3.5240 34 1 4.7881 -6.8060 -3.2696 35 1 4.7923 -10.6288 -1.9467 36 1 3.5341 -10.1006 -3.1444 37 1 4.9450 -11.2991 -4.7548 38 1 6.4328 -11.0610 -3.7330 39 1 4.6973 -8.8849 -5.1158 40 1 6.4888 -8.8559 -4.8218 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697846106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:48 Heat of formation + Delta-G solvation = -15.098368 kcal Electronic energy + Delta-G solvation = -18588.725364 eV Core-core repulsion = 15631.885862 eV Total energy + Delta-G solvation = -2956.839502 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.45582 -39.61723 -35.52424 -34.95092 -32.79189 -31.46919 -30.08525 -27.48873 -26.31776 -25.78655 -23.60447 -22.14890 -20.69843 -20.28729 -19.75293 -17.23338 -16.60675 -16.36786 -16.10485 -15.83829 -15.39649 -15.23522 -14.51091 -14.39517 -13.98297 -13.53772 -13.40895 -12.98245 -12.47006 -12.29866 -12.00511 -11.83979 -11.73100 -11.50658 -11.22565 -10.95540 -10.89152 -10.66752 -10.54880 -10.12807 -9.79746 -9.37100 -9.32585 -9.07480 -8.98807 -8.35222 -8.20460 -5.93636 -3.95779 2.78389 3.09411 3.34797 3.41361 3.45082 3.77943 4.05223 4.41673 4.49986 4.50427 4.73738 4.88335 4.93261 4.96736 5.12259 5.15537 5.23820 5.34554 5.40177 5.41907 5.51825 5.57115 5.69630 5.78551 5.84023 5.91553 6.38515 6.45112 6.62919 6.66391 7.09123 7.37393 7.59212 7.76331 7.80487 7.96549 8.13417 8.31931 8.48797 9.12295 9.67425 11.17297 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.028380 B = 0.003467 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.386387 B = 8073.856589 C = 8765.336915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.031 3.969 10 C -0.095 4.095 11 C 0.079 3.921 12 H 0.098 0.902 13 N -0.807 5.807 14 C 0.484 3.516 15 O -0.553 6.553 16 N -0.732 5.732 17 C 0.124 3.876 18 C 0.008 3.992 19 N -0.470 5.470 20 C -0.006 4.006 21 C -0.147 4.147 22 C -0.002 4.002 23 H 0.259 0.741 24 H 0.013 0.987 25 H 0.035 0.965 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.333 0.667 29 H 0.348 0.652 30 H 0.402 0.598 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.224 -19.870 -9.400 23.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.070 0.930 9 C -0.006 4.006 10 C -0.134 4.134 11 C -0.037 4.037 12 H 0.115 0.885 13 N -0.335 5.335 14 C 0.269 3.731 15 O -0.431 6.431 16 N -0.385 5.385 17 C -0.001 4.001 18 C -0.121 4.121 19 N -0.192 5.192 20 C -0.135 4.135 21 C -0.185 4.185 22 C -0.131 4.131 23 H 0.069 0.931 24 H 0.031 0.969 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.145 0.855 29 H 0.162 0.838 30 H 0.237 0.763 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.491 -19.283 -8.413 22.332 hybrid contribution 0.190 0.196 -0.845 0.888 sum 7.680 -19.087 -9.258 22.561 Atomic orbital electron populations 1.69978 1.05955 1.26412 1.50886 1.24993 0.94811 0.99069 0.95483 0.86644 0.79906 0.83747 0.77979 1.20787 1.21258 1.19957 1.21289 0.92921 0.91336 1.50538 0.92970 1.19019 0.93559 0.89825 0.98196 1.21660 0.98848 0.92147 1.00712 1.21839 0.93514 0.93263 0.95098 0.88453 1.59002 1.26928 1.44237 1.03297 1.22768 0.82220 0.85701 0.82392 1.90649 1.61084 1.54207 1.37132 1.46101 1.46640 1.35206 1.10561 1.21107 0.93211 0.90158 0.95580 1.22857 0.95451 0.97185 0.96618 1.68916 1.32324 1.01525 1.16452 1.23838 0.97484 0.91721 1.00499 1.23111 1.01167 0.96091 0.98095 1.23793 1.02658 0.95661 0.90998 0.93103 0.96901 0.94641 0.92816 0.92831 0.85487 0.83796 0.76345 0.90863 0.91932 0.93319 0.89578 0.89520 0.91155 0.90577 0.88807 0.91159 0.89496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 9 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 10 C -0.10 -1.94 4.78 -26.73 -0.13 -2.06 16 11 C 0.08 1.33 3.15 -68.87 -0.22 1.11 16 12 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 13 N -0.81 -13.79 8.44 -5.66 -0.05 -13.84 16 14 C 0.48 7.76 7.07 -10.98 -0.08 7.68 16 15 O -0.55 -10.51 16.25 5.56 0.09 -10.42 16 16 N -0.73 -9.24 5.56 -60.29 -0.33 -9.58 16 17 C 0.12 1.45 5.78 -4.04 -0.02 1.43 16 18 C 0.01 0.07 4.94 -3.83 -0.02 0.05 16 19 N -0.47 -4.29 6.41 -244.66 -1.57 -5.85 16 20 C -0.01 -0.05 7.00 -7.54 -0.05 -0.10 16 21 C -0.15 -0.89 8.47 -26.20 -0.22 -1.11 16 22 C 0.00 -0.01 7.70 -7.54 -0.06 -0.07 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.04 0.99 7.75 -51.93 -0.40 0.58 16 26 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.33 4.94 9.06 -39.29 -0.36 4.58 16 29 H 0.35 6.07 8.58 -39.29 -0.34 5.73 16 30 H 0.40 4.21 8.47 -40.82 -0.35 3.86 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.76 7.67 -51.93 -0.40 0.37 16 33 H 0.05 0.39 7.56 -51.93 -0.39 0.00 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.50 7.70 -51.93 -0.40 0.10 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.43 7.77 -51.93 -0.40 0.03 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 331.16 15.07 4.99 4.99 Total: -1.00 -32.97 331.16 -9.30 -42.27 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -6.80 Total: 7.92 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -1.34 Total: -6.01 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -1.22 Total: -55.54 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.97 -9.30 -42.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697846106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.172 kcal (2) G-P(sol) polarization free energy of solvation -32.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds