Wall clock time and date at job start Mon Mar 30 2020 04:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46895 * 111.00286 * 2 1 4 4 C 1.53001 * 109.47222 * 199.78899 * 3 2 1 5 5 O 1.42899 * 109.47035 * 64.44857 * 4 3 2 6 6 C 1.42900 * 113.99812 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.46929 * 180.02562 * 6 5 4 8 8 H 1.07996 * 120.00334 * 359.97438 * 7 6 5 9 9 C 1.37885 * 119.99851 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99890 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 119.99994 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.47157 * 89.99767 * 11 9 7 13 13 H 1.48500 * 109.47249 * 209.99870 * 11 9 7 14 14 H 1.48502 * 109.47432 * 330.00182 * 11 9 7 15 15 C 1.46902 * 110.99684 * 123.95599 * 2 1 3 16 16 C 1.53003 * 109.47735 * 66.04255 * 15 2 1 17 17 C 1.55698 * 120.54313 * 247.10343 * 16 15 2 18 18 C 1.53006 * 60.18232 * 248.07880 * 17 16 15 19 19 H 1.09002 * 119.80948 * 112.71329 * 18 17 16 20 20 C 1.54483 * 118.06606 * 268.98016 * 18 17 16 21 21 O 1.44429 * 104.80236 * 40.13867 * 20 18 17 22 22 C 1.44423 * 105.27424 * 40.51136 * 21 20 18 23 23 H 1.08999 * 109.46974 * 291.02667 * 1 2 3 24 24 H 1.09003 * 109.46971 * 51.02913 * 1 2 3 25 25 H 1.09004 * 109.46995 * 171.02781 * 1 2 3 26 26 H 1.08997 * 109.47037 * 319.79113 * 3 2 1 27 27 H 1.08999 * 109.46818 * 79.78716 * 3 2 1 28 28 H 1.09001 * 109.47307 * 184.45487 * 4 3 2 29 29 H 1.09003 * 109.46814 * 304.45539 * 4 3 2 30 30 H 1.09001 * 109.47118 * 300.00000 * 6 5 4 31 31 H 1.08991 * 109.47490 * 60.00296 * 6 5 4 32 32 H 0.96995 * 119.99632 * 180.02562 * 10 9 7 33 33 H 1.09005 * 109.47120 * 306.04047 * 15 2 1 34 34 H 1.09000 * 109.46957 * 186.04895 * 15 2 1 35 35 H 1.08994 * 118.08584 * 140.85693 * 17 16 15 36 36 H 1.08999 * 117.06603 * 355.73993 * 17 16 15 37 37 H 1.09000 * 110.37242 * 281.30795 * 20 18 17 38 38 H 1.08995 * 110.36928 * 158.96643 * 20 18 17 39 39 H 1.08998 * 110.37418 * 78.32010 * 22 21 20 40 40 H 1.09003 * 110.37199 * 200.54813 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.4455 1.3610 -0.4884 5 8 3.4865 0.9285 -1.8497 6 6 4.8021 0.8824 -2.4055 7 6 4.7268 0.4164 -3.8367 8 1 3.7700 0.1789 -4.2776 9 6 5.8795 0.2934 -4.5832 10 7 5.8138 -0.1137 -5.8320 11 14 7.5344 0.7050 -3.8209 12 1 8.1069 -0.5130 -3.1932 13 1 8.4562 1.1985 -4.8754 14 1 7.3557 1.7568 -2.7878 15 6 1.9954 -0.7660 1.1376 16 6 1.6314 -2.2427 0.9705 17 6 0.6314 -2.9267 1.9484 18 6 2.1064 -3.3334 1.9609 19 1 2.7244 -3.1038 2.8289 20 6 2.5458 -4.5020 1.0510 21 8 1.8125 -4.3086 -0.1781 22 6 1.8420 -2.8848 -0.4187 23 1 -0.3633 0.3687 0.9592 24 1 -0.3633 0.6463 -0.7990 25 1 -0.3633 -1.0151 -0.1603 26 1 1.3931 1.9918 -0.6634 27 1 1.9556 1.7758 1.0114 28 1 3.8612 2.3658 -0.4136 29 1 4.0314 0.6786 0.1274 30 1 5.2464 1.8771 -2.3705 31 1 5.4159 0.1899 -1.8295 32 1 6.6247 -0.2005 -6.3571 33 1 1.5611 -0.3872 2.0628 34 1 3.0797 -0.6611 1.1757 35 1 -0.0827 -3.6398 1.5365 36 1 0.2682 -2.3292 2.7846 37 1 2.2805 -5.4568 1.5049 38 1 3.6186 -4.4546 0.8643 39 1 2.8068 -2.5895 -0.8309 40 1 1.0371 -2.5976 -1.0954 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701799314.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:41 Heat of formation + Delta-G solvation = -69.983730 kcal Electronic energy + Delta-G solvation = -19591.290284 eV Core-core repulsion = 16599.778022 eV Total energy + Delta-G solvation = -2991.512261 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.33889 -39.11699 -37.66295 -35.35666 -34.80519 -31.44337 -30.03811 -29.30813 -28.02306 -26.63138 -24.93918 -23.91819 -22.24706 -21.51584 -20.25326 -19.02869 -17.62789 -17.31595 -17.08470 -16.76841 -16.44070 -16.13224 -15.69318 -15.59947 -15.25434 -14.69609 -14.46475 -14.08067 -13.75877 -13.64172 -13.45579 -13.25482 -12.87697 -12.74332 -12.70434 -12.43160 -12.36561 -12.02967 -11.94109 -11.78757 -11.29098 -11.05222 -10.93136 -10.90824 -10.36983 -10.22023 -9.11703 -8.36043 -6.43228 1.31791 1.35286 1.46067 2.29491 2.42466 2.90772 2.96422 3.01113 3.18624 3.58871 3.73431 3.84261 3.90343 4.18476 4.22433 4.34575 4.42004 4.50329 4.54700 4.57892 4.62604 4.66216 4.70226 4.72155 4.77228 4.84634 4.89464 4.94141 4.97802 4.98850 5.05266 5.13383 5.21681 5.46510 5.77640 5.96415 6.20329 6.22891 6.61373 6.84240 7.21513 8.81430 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.020407 B = 0.005510 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.758828 B = 5080.689232 C = 5778.555440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.557 5.557 3 C 0.067 3.933 4 C 0.054 3.946 5 O -0.391 6.391 6 C 0.181 3.819 7 C -0.541 4.541 8 H 0.027 0.973 9 C 0.012 3.988 10 N -0.944 5.944 11 Si 0.955 3.045 12 H -0.261 1.261 13 H -0.272 1.272 14 H -0.245 1.245 15 C 0.111 3.889 16 C -0.174 4.174 17 C -0.115 4.115 18 C -0.185 4.185 19 H 0.142 0.858 20 C 0.061 3.939 21 O -0.402 6.402 22 C 0.095 3.905 23 H 0.041 0.959 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.043 0.957 30 H 0.010 0.990 31 H 0.004 0.996 32 H 0.272 0.728 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.124 0.876 37 H 0.111 0.889 38 H 0.066 0.934 39 H 0.044 0.956 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.748 -1.832 22.126 23.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.281 5.281 3 C -0.061 4.061 4 C -0.024 4.024 5 O -0.311 6.311 6 C 0.105 3.895 7 C -0.579 4.579 8 H 0.046 0.954 9 C -0.186 4.186 10 N -0.583 5.583 11 Si 0.776 3.224 12 H -0.186 1.186 13 H -0.197 1.197 14 H -0.168 1.168 15 C -0.016 4.016 16 C -0.175 4.175 17 C -0.151 4.151 18 C -0.204 4.204 19 H 0.160 0.840 20 C -0.015 4.015 21 O -0.321 6.321 22 C 0.018 3.982 23 H 0.060 0.940 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.027 0.973 31 H 0.021 0.979 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.142 0.858 37 H 0.129 0.871 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.755 -2.300 21.281 22.767 hybrid contribution 0.812 0.552 0.302 1.027 sum -6.943 -1.748 21.583 22.739 Atomic orbital electron populations 1.22323 0.86123 1.02268 1.00564 1.61666 1.08856 1.13858 1.43752 1.22091 0.94092 0.89444 1.00435 1.22710 0.97832 0.98138 0.83677 1.87962 1.28754 1.88202 1.26160 1.20244 0.82281 0.94680 0.92294 1.21166 0.94354 1.45844 0.96532 0.95411 1.25849 1.03675 0.94014 0.95054 1.70042 1.30546 1.47846 1.09881 0.85616 0.77655 0.80029 0.79070 1.18621 1.19725 1.16797 1.21335 0.99580 0.89178 0.91552 1.23483 1.08329 0.93879 0.91824 1.23438 0.91214 1.01103 0.99391 1.24281 0.99241 0.96055 1.00777 0.84031 1.23124 0.96069 0.99277 0.83053 1.89114 1.75696 1.24238 1.43069 1.22513 1.00828 0.79026 0.95810 0.94028 0.92099 0.91719 0.90495 0.90469 0.92646 0.93884 0.97266 0.97861 0.91880 0.92291 0.91397 0.89049 0.85776 0.87052 0.91630 0.93808 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 9.32 127.69 1.19 1.98 16 2 N -0.56 -15.24 4.23 -922.44 -3.90 -19.14 16 3 C 0.07 1.76 5.39 86.30 0.47 2.22 16 4 C 0.05 1.79 6.13 71.98 0.44 2.23 16 5 O -0.39 -18.55 10.27 -148.98 -1.53 -20.08 16 6 C 0.18 9.32 4.76 71.24 0.34 9.66 16 7 C -0.54 -33.92 9.99 25.60 0.26 -33.66 16 8 H 0.03 1.97 8.06 -2.91 -0.02 1.94 16 9 C 0.01 0.71 5.47 84.66 0.46 1.17 16 10 N -0.94 -60.77 13.96 21.45 0.30 -60.47 16 11 Si 0.96 44.29 27.47 68.60 1.88 46.17 16 12 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 14 H -0.24 -10.39 6.54 99.48 0.65 -9.74 16 15 C 0.11 2.54 5.18 86.30 0.45 2.99 16 16 C -0.17 -4.08 1.78 -50.13 -0.09 -4.17 16 17 C -0.11 -2.02 9.84 31.53 0.31 -1.71 16 18 C -0.18 -3.49 7.09 -9.67 -0.07 -3.55 16 19 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 20 C 0.06 1.37 7.53 72.49 0.55 1.92 16 21 O -0.40 -12.49 11.34 -148.98 -1.69 -14.18 16 22 C 0.09 3.01 6.86 72.49 0.50 3.50 16 23 H 0.04 0.74 8.08 -2.39 -0.02 0.72 16 24 H 0.06 1.43 7.85 -2.39 -0.02 1.41 16 25 H 0.06 1.50 7.11 -2.39 -0.02 1.48 16 26 H 0.08 2.10 7.75 -2.39 -0.02 2.08 16 27 H 0.08 1.49 8.00 -2.39 -0.02 1.47 16 28 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.04 1.36 6.68 -2.39 -0.02 1.34 16 30 H 0.01 0.47 7.20 -2.39 -0.02 0.46 16 31 H 0.00 0.18 7.57 -2.39 -0.02 0.16 16 32 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 33 H 0.06 1.04 8.01 -2.38 -0.02 1.03 16 34 H 0.07 1.68 6.58 -2.39 -0.02 1.67 16 35 H 0.09 1.75 8.09 -2.39 -0.02 1.73 16 36 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.08 2.76 7.81 -2.39 -0.02 2.74 16 Total: -1.00 -74.13 323.28 0.80 -73.33 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.94 Total: 11.79 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: 4.80 Total: -17.43 kcal Atomic # 7 Polarization: -76.01 SS G_CDS: -3.60 Total: -79.61 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -3.22 Total: -34.26 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.17 kcal Total: -74.13 0.80 -73.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701799314.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.346 kcal (2) G-P(sol) polarization free energy of solvation -74.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds