Wall clock time and date at job start Mon Mar 30 2020 04:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45198 * 109.47179 * 2 1 4 4 C 1.34228 * 116.99886 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00114 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99749 * 180.02562 * 4 3 2 7 7 C 1.53006 * 109.50488 * 300.00043 * 6 4 3 8 8 C 1.52999 * 109.46626 * 59.92065 * 7 6 4 9 9 C 1.50706 * 109.46957 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99816 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00340 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99773 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00296 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46692 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47025 * 119.99570 * 13 11 9 16 16 H 1.48492 * 109.46854 * 239.99727 * 13 11 9 17 17 C 1.53119 * 109.50075 * 179.97438 * 6 4 3 18 18 C 1.53123 * 109.16041 * 182.36323 * 17 6 4 19 19 C 1.53040 * 109.27777 * 57.65210 * 18 17 6 20 20 N 1.46845 * 109.52336 * 300.82485 * 19 18 17 21 21 C 1.46842 * 111.19960 * 61.74088 * 20 19 18 22 22 H 1.09001 * 109.46963 * 299.99715 * 1 2 3 23 23 H 1.09004 * 109.46613 * 59.99877 * 1 2 3 24 24 H 1.08996 * 109.46906 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46963 * 240.00285 * 2 1 3 26 26 H 1.08994 * 109.47145 * 120.00129 * 2 1 3 27 27 H 1.08993 * 109.46955 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47050 * 299.92366 * 7 6 4 29 29 H 1.08993 * 109.47839 * 299.99931 * 8 7 6 30 30 H 1.09000 * 109.47160 * 60.00369 * 8 7 6 31 31 H 0.97000 * 120.00540 * 180.02562 * 12 11 9 32 32 H 1.09000 * 109.52428 * 302.26895 * 17 6 4 33 33 H 1.09005 * 109.52512 * 62.40058 * 17 6 4 34 34 H 1.09000 * 109.50784 * 177.59524 * 18 17 6 35 35 H 1.09000 * 109.50470 * 297.67339 * 18 17 6 36 36 H 1.09003 * 109.46116 * 60.83670 * 19 18 17 37 37 H 1.08993 * 109.46325 * 180.80351 * 19 18 17 38 38 H 1.00901 * 110.99935 * 297.63811 * 20 19 18 39 39 H 1.09005 * 109.46101 * 178.24391 * 21 20 19 40 40 H 1.08993 * 109.46625 * 58.27354 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9374 0.0012 7 6 3.4501 3.6855 -1.2478 8 6 1.9221 3.7642 -1.2495 9 6 1.4584 4.5004 -2.4800 10 1 2.1813 4.8744 -3.1900 11 6 0.1115 4.6967 -2.6994 12 7 -0.7688 4.2408 -1.8351 13 14 -0.4633 5.6086 -4.2249 14 1 0.7151 6.0154 -5.0318 15 1 -1.3348 4.7194 -5.0342 16 1 -1.2270 6.8164 -3.8212 17 6 5.4499 2.8581 0.0023 18 6 6.0266 4.2753 0.0626 19 6 5.4974 4.9834 1.3118 20 7 4.0306 5.0342 1.2628 21 6 3.4526 3.6843 1.2521 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.8666 4.6927 -1.2466 28 1 3.7875 3.1546 -2.1380 29 1 1.5063 2.7567 -1.2512 30 1 1.5847 4.2950 -0.3593 31 1 -1.7164 4.3785 -1.9895 32 1 5.7846 2.2913 0.8712 33 1 5.7898 2.3640 -0.9079 34 1 7.1145 4.2239 0.1068 35 1 5.7243 4.8293 -0.8261 36 1 5.8123 4.4362 2.2004 37 1 5.8948 5.9976 1.3502 38 1 3.7136 5.5696 0.4684 39 1 2.3649 3.7550 1.2471 40 1 3.7771 3.1432 2.1409 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711635423.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:54 Heat of formation + Delta-G solvation = -125.093538 kcal Electronic energy + Delta-G solvation = -20543.370434 eV Core-core repulsion = 17549.468432 eV Total energy + Delta-G solvation = -2993.902002 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.11298 -39.86374 -37.62835 -35.65208 -34.02706 -32.66817 -32.33079 -30.76688 -26.93988 -25.65146 -24.70807 -23.84636 -22.79121 -22.17659 -19.95778 -18.69244 -18.27242 -17.66767 -17.47100 -16.69313 -16.45551 -15.68332 -15.60559 -14.94732 -14.73546 -14.59566 -14.33229 -13.92298 -13.64133 -13.48141 -13.33074 -13.13655 -12.95457 -12.86256 -12.57467 -12.44885 -12.34740 -12.18737 -11.98546 -11.79580 -11.57753 -11.36809 -11.21987 -11.02325 -10.88927 -10.38142 -9.31278 -8.09679 -6.18045 1.15726 1.40516 1.42464 1.53271 1.78182 2.45156 3.23075 3.35527 3.54216 3.70843 3.83928 3.99933 4.02211 4.09224 4.19583 4.21682 4.32792 4.47437 4.56332 4.67273 4.80118 4.84556 4.88225 4.92383 4.95306 5.01043 5.04227 5.12377 5.18447 5.24829 5.38474 5.51550 5.63285 5.89885 6.05420 6.08326 6.34715 6.43014 6.76825 6.99782 7.48184 9.00501 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.015808 B = 0.008598 C = 0.006276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.826575 B = 3255.635946 C = 4460.653180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.052 3.948 3 O -0.344 6.344 4 C 0.475 3.525 5 O -0.542 6.542 6 C -0.084 4.084 7 C -0.089 4.089 8 C 0.020 3.980 9 C -0.539 4.539 10 H 0.052 0.948 11 C 0.008 3.992 12 N -0.919 5.919 13 Si 0.950 3.050 14 H -0.267 1.267 15 H -0.283 1.283 16 H -0.280 1.280 17 C -0.092 4.092 18 C -0.151 4.151 19 C 0.054 3.946 20 N -0.682 5.682 21 C 0.082 3.918 22 H 0.064 0.936 23 H 0.045 0.955 24 H 0.107 0.893 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.041 0.959 29 H 0.025 0.975 30 H 0.005 0.995 31 H 0.260 0.740 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.346 0.654 39 H 0.072 0.928 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.347 -2.975 5.911 11.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 O -0.260 6.260 4 C 0.320 3.680 5 O -0.433 6.433 6 C -0.087 4.087 7 C -0.126 4.126 8 C -0.017 4.017 9 C -0.577 4.577 10 H 0.070 0.930 11 C -0.190 4.190 12 N -0.559 5.559 13 Si 0.776 3.224 14 H -0.191 1.191 15 H -0.209 1.209 16 H -0.205 1.205 17 C -0.130 4.130 18 C -0.190 4.190 19 C -0.075 4.075 20 N -0.311 5.311 21 C -0.049 4.049 22 H 0.083 0.917 23 H 0.064 0.936 24 H 0.125 0.875 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.043 0.957 30 H 0.024 0.976 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.165 0.835 39 H 0.090 0.910 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.271 -3.189 6.644 11.843 hybrid contribution -0.545 -0.292 -1.927 2.024 sum 8.725 -3.480 4.717 10.512 Atomic orbital electron populations 1.21747 0.91499 1.03778 1.02889 1.23223 0.96612 0.80117 1.02232 1.86880 1.23971 1.32642 1.82480 1.24017 0.80750 0.92651 0.70602 1.90547 1.61065 1.43917 1.47800 1.21525 0.97323 0.88938 1.00942 1.21566 0.98561 0.99159 0.93328 1.19270 0.90037 0.97127 0.95234 1.21668 0.92069 1.35953 1.08049 0.93017 1.25756 0.97253 0.96779 0.99237 1.70100 1.01491 1.47210 1.37109 0.85623 0.78319 0.78429 0.79995 1.19080 1.20934 1.20540 1.21457 0.90195 0.98660 1.02665 1.22300 1.02141 0.94496 1.00040 1.22192 0.86437 1.01782 0.97116 1.60713 1.08971 1.12637 1.48737 1.21907 1.00123 0.89302 0.93577 0.91718 0.93558 0.87489 0.92026 0.90298 0.90421 0.94007 0.95742 0.97640 0.93155 0.91083 0.92254 0.88738 0.91733 0.90216 0.88656 0.83473 0.91004 0.90303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.23 10.29 71.98 0.74 -3.49 16 2 C 0.05 1.69 6.19 71.98 0.45 2.14 16 3 O -0.34 -13.88 7.07 -51.40 -0.36 -14.24 16 4 C 0.48 18.38 6.49 71.24 0.46 18.85 16 5 O -0.54 -21.76 15.73 21.97 0.35 -21.42 16 6 C -0.08 -2.89 0.51 -52.87 -0.03 -2.92 16 7 C -0.09 -3.51 3.59 30.60 0.11 -3.41 16 8 C 0.02 1.00 4.11 29.85 0.12 1.12 16 9 C -0.54 -29.78 9.11 25.60 0.23 -29.55 16 10 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 11 C 0.01 0.46 5.46 84.65 0.46 0.92 16 12 N -0.92 -54.13 13.29 21.45 0.28 -53.84 16 13 Si 0.95 43.84 29.54 68.60 2.03 45.86 16 14 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 15 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 17 C -0.09 -2.62 4.09 30.68 0.13 -2.49 16 18 C -0.15 -3.39 5.72 30.65 0.18 -3.21 16 19 C 0.05 1.18 6.55 86.33 0.57 1.75 16 20 N -0.68 -19.60 6.80 -514.03 -3.49 -23.09 16 21 C 0.08 2.65 4.95 86.33 0.43 3.07 16 22 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.06 2.01 8.13 -2.39 -0.02 1.99 16 26 H 0.08 2.27 8.13 -2.39 -0.02 2.25 16 27 H 0.08 2.85 5.12 -2.39 -0.01 2.84 16 28 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16 29 H 0.02 1.34 5.33 -2.39 -0.01 1.32 16 30 H 0.01 0.28 6.42 -2.39 -0.02 0.27 16 31 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 32 H 0.07 1.96 8.04 -2.39 -0.02 1.94 16 33 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.06 1.56 6.58 -2.39 -0.02 1.54 16 36 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.35 10.74 7.15 -89.69 -0.64 10.10 16 39 H 0.07 2.74 6.40 -2.38 -0.02 2.73 16 40 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -64.15 311.42 3.02 -61.12 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.38 Total: 22.83 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: 3.84 Total: -17.22 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -3.21 Total: -76.94 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -0.02 Total: -35.66 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -64.15 3.02 -61.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711635423.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.972 kcal (2) G-P(sol) polarization free energy of solvation -64.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds