Wall clock time and date at job start Mon Mar 30 2020 04:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45195 * 109.46939 * 2 1 4 4 C 1.34229 * 116.99734 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00409 * 0.02562 * 4 3 2 6 6 C 1.50709 * 120.00000 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.50051 * 59.99619 * 6 4 3 8 8 C 1.53002 * 109.47535 * 299.99856 * 7 6 4 9 9 C 1.50696 * 109.46997 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00319 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99717 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99913 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 C 1.53116 * 109.50205 * 180.02562 * 6 4 3 18 18 C 1.53114 * 109.16368 * 62.32559 * 17 6 4 19 19 C 1.53043 * 109.27970 * 57.65019 * 18 17 6 20 20 N 1.46851 * 109.52308 * 300.82376 * 19 18 17 21 21 C 1.46855 * 111.23220 * 61.72020 * 20 19 18 22 22 H 1.08995 * 109.47324 * 299.99652 * 1 2 3 23 23 H 1.08995 * 109.47208 * 60.00078 * 1 2 3 24 24 H 1.09010 * 109.47309 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47043 * 240.00348 * 2 1 3 26 26 H 1.08998 * 109.47012 * 120.00667 * 2 1 3 27 27 H 1.09005 * 109.46889 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47401 * 60.00270 * 7 6 4 29 29 H 1.09005 * 109.46767 * 60.00250 * 8 7 6 30 30 H 1.09002 * 109.47113 * 300.00590 * 8 7 6 31 31 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 32 32 H 1.09002 * 109.52052 * 182.23027 * 17 6 4 33 33 H 1.08997 * 109.52237 * 302.35122 * 17 6 4 34 34 H 1.08995 * 109.50463 * 177.58914 * 18 17 6 35 35 H 1.08998 * 109.50504 * 297.71700 * 18 17 6 36 36 H 1.09004 * 109.46062 * 60.83779 * 19 18 17 37 37 H 1.08993 * 109.46551 * 180.80365 * 19 18 17 38 38 H 1.00896 * 111.00008 * 297.64580 * 20 19 18 39 39 H 1.08992 * 109.49576 * 178.28322 * 21 20 19 40 40 H 1.09001 * 109.42625 * 58.31145 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3446 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9374 0.0000 7 6 3.4501 3.6843 1.2496 8 6 1.9222 3.7649 1.2506 9 6 1.4588 4.5000 2.4818 10 1 2.1817 4.8728 3.1923 11 6 0.1118 4.6966 2.7012 12 7 -0.2927 5.3385 3.7754 13 14 -1.1385 4.0510 1.4726 14 1 -1.4073 5.0908 0.4470 15 1 -0.6020 2.8330 0.8139 16 1 -2.4004 3.7160 2.1803 17 6 5.4498 2.8581 -0.0014 18 6 5.9158 2.1622 -1.2832 19 6 5.3896 2.9326 -2.4964 20 7 3.9226 2.9798 -2.4492 21 6 3.4514 3.6849 -1.2503 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.8667 4.6916 1.2493 28 1 3.7864 3.1520 2.1394 29 1 1.5053 2.7577 1.2508 30 1 1.5858 4.2972 0.3609 31 1 -1.2403 5.4771 3.9295 32 1 5.8668 3.8644 0.0390 33 1 5.7859 2.2896 0.8657 34 1 7.0052 2.1409 -1.3103 35 1 5.5305 1.1428 -1.3046 36 1 5.7863 3.9478 -2.4819 37 1 5.7077 2.4317 -3.4106 38 1 3.5292 2.0521 -2.5005 39 1 2.3625 3.7299 -1.2592 40 1 3.8567 4.6967 -1.2420 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711635424.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:57 Heat of formation + Delta-G solvation = -124.069429 kcal Electronic energy + Delta-G solvation = -20745.981143 eV Core-core repulsion = 17752.123549 eV Total energy + Delta-G solvation = -2993.857593 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.29158 -39.50946 -37.59379 -36.07466 -34.32906 -32.74008 -32.36282 -30.95417 -26.93913 -25.53648 -24.81158 -23.78203 -22.92250 -21.61291 -20.79961 -19.04452 -18.37807 -17.78916 -17.09075 -16.92551 -16.25792 -15.69003 -15.42838 -14.94981 -14.88820 -14.72150 -14.46577 -14.19610 -13.73208 -13.53178 -13.20365 -13.13931 -13.08539 -12.96225 -12.81664 -12.41407 -12.35400 -12.21639 -11.90804 -11.73443 -11.53250 -11.46110 -11.18226 -11.04067 -10.97092 -10.65992 -9.39411 -8.24846 -6.27435 1.11427 1.39872 1.41099 1.56889 1.72426 2.41901 3.11733 3.28068 3.46406 3.70989 3.80118 3.95990 3.99131 4.05396 4.12708 4.30888 4.34300 4.45903 4.56870 4.60586 4.74725 4.79442 4.88009 4.89017 4.92486 4.99682 5.03800 5.09717 5.11875 5.17050 5.32875 5.48414 5.55431 5.67170 5.76135 5.98615 6.28205 6.32151 6.74092 6.81035 7.36617 8.91701 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.021012 B = 0.008260 C = 0.006962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.225337 B = 3389.209282 C = 4020.670557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.350 6.350 4 C 0.474 3.526 5 O -0.529 6.529 6 C -0.084 4.084 7 C -0.084 4.084 8 C -0.016 4.016 9 C -0.527 4.527 10 H 0.029 0.971 11 C 0.004 3.996 12 N -0.955 5.955 13 Si 0.938 3.062 14 H -0.269 1.269 15 H -0.226 1.226 16 H -0.291 1.291 17 C -0.097 4.097 18 C -0.162 4.162 19 C 0.055 3.945 20 N -0.684 5.684 21 C 0.072 3.928 22 H 0.049 0.951 23 H 0.069 0.931 24 H 0.107 0.893 25 H 0.082 0.918 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.026 0.974 31 H 0.263 0.737 32 H 0.092 0.908 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.333 0.667 39 H 0.081 0.919 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.713 -9.233 -14.091 18.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.266 6.266 4 C 0.319 3.681 5 O -0.419 6.419 6 C -0.087 4.087 7 C -0.122 4.122 8 C -0.053 4.053 9 C -0.566 4.566 10 H 0.047 0.953 11 C -0.192 4.192 12 N -0.597 5.597 13 Si 0.761 3.239 14 H -0.195 1.195 15 H -0.149 1.149 16 H -0.217 1.217 17 C -0.134 4.134 18 C -0.201 4.201 19 C -0.074 4.074 20 N -0.311 5.311 21 C -0.058 4.058 22 H 0.068 0.932 23 H 0.088 0.912 24 H 0.126 0.874 25 H 0.100 0.900 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.150 0.850 39 H 0.099 0.901 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.710 -8.934 -14.446 18.654 hybrid contribution -0.570 -0.791 1.265 1.597 sum 7.140 -9.725 -13.181 17.869 Atomic orbital electron populations 1.21891 0.91621 1.04281 1.03109 1.23248 0.96525 0.79970 1.02571 1.86783 1.24151 1.32887 1.82783 1.23934 0.80662 0.92594 0.70909 1.90539 1.60627 1.43811 1.46928 1.21560 0.97446 0.89079 1.00633 1.21372 0.97492 0.99649 0.93686 1.19789 0.92987 0.97546 0.94950 1.21522 0.92341 1.35381 1.07310 0.95297 1.25978 1.00969 0.94994 0.97261 1.70085 1.16001 1.44156 1.29429 0.85842 0.77609 0.81227 0.79223 1.19460 1.14885 1.21741 1.21519 0.90386 1.02368 0.99135 1.22400 1.02392 1.00247 0.95018 1.22179 0.86470 1.01397 0.97369 1.60746 1.09185 1.22952 1.38245 1.22177 1.01257 0.98081 0.84290 0.93205 0.91154 0.87431 0.89982 0.91962 0.90364 0.93870 0.93992 0.95602 0.92782 0.88938 0.92462 0.89617 0.91847 0.89648 0.89264 0.84989 0.90085 0.88269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 10.29 71.98 0.74 -2.91 16 2 C 0.05 1.38 6.19 71.98 0.45 1.82 16 3 O -0.35 -11.93 7.04 -51.41 -0.36 -12.29 16 4 C 0.47 15.92 5.19 71.24 0.37 16.29 16 5 O -0.53 -18.50 13.55 21.96 0.30 -18.20 16 6 C -0.08 -2.60 0.52 -52.87 -0.03 -2.62 16 7 C -0.08 -3.18 4.20 30.59 0.13 -3.05 16 8 C -0.02 -0.72 3.17 29.85 0.09 -0.62 16 9 C -0.53 -30.25 9.66 25.60 0.25 -30.00 16 10 H 0.03 1.83 7.99 -2.91 -0.02 1.80 16 11 C 0.00 0.24 5.47 84.66 0.46 0.70 16 12 N -0.96 -60.46 13.96 21.45 0.30 -60.16 16 13 Si 0.94 43.74 27.47 68.60 1.88 45.63 16 14 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 15 H -0.23 -9.54 6.29 99.48 0.63 -8.91 16 16 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 17 C -0.10 -2.53 4.43 30.67 0.14 -2.39 16 18 C -0.16 -3.63 5.76 30.65 0.18 -3.45 16 19 C 0.05 1.10 6.56 86.33 0.57 1.67 16 20 N -0.68 -16.67 6.82 -513.98 -3.51 -20.18 16 21 C 0.07 2.01 4.91 86.32 0.42 2.44 16 22 H 0.05 1.42 7.89 -2.39 -0.02 1.40 16 23 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 25 H 0.08 1.94 8.13 -2.39 -0.02 1.92 16 26 H 0.06 1.75 8.13 -2.39 -0.02 1.73 16 27 H 0.08 2.84 8.14 -2.38 -0.02 2.82 16 28 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.04 1.94 4.38 -2.38 -0.01 1.93 16 30 H 0.03 1.13 5.89 -2.39 -0.01 1.11 16 31 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 32 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.06 1.64 8.04 -2.39 -0.02 1.62 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.06 1.70 5.76 -2.39 -0.01 1.69 16 36 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.33 8.37 7.91 -89.70 -0.71 7.66 16 39 H 0.08 2.52 6.45 -2.39 -0.02 2.50 16 40 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -67.70 307.84 2.61 -65.09 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.23 Total: 22.25 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: 3.76 Total: -22.14 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -3.21 Total: -80.34 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.06 Total: -30.50 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.63 kcal Total: -67.70 2.61 -65.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711635424.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.976 kcal (2) G-P(sol) polarization free energy of solvation -67.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds