Wall clock time and date at job start Mon Mar 30 2020 04:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45200 * 109.46724 * 2 1 4 4 C 1.34229 * 116.99850 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99939 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00106 * 179.97438 * 4 3 2 7 7 C 1.53000 * 109.53615 * 180.10018 * 6 4 3 8 8 H 1.08998 * 109.47032 * 299.90487 * 7 6 4 9 9 C 1.52999 * 109.47071 * 179.90339 * 7 6 4 10 10 C 1.50698 * 109.46837 * 59.90562 * 7 6 4 11 11 H 1.08003 * 120.00053 * 0.02562 * 10 7 6 12 12 C 1.37878 * 120.00120 * 179.97438 * 10 7 6 13 13 N 1.31520 * 119.99649 * 359.97438 * 12 10 7 14 14 Si 1.86799 * 120.00373 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47062 * 89.99591 * 14 12 10 16 16 H 1.48491 * 109.47081 * 209.99994 * 14 12 10 17 17 H 1.48504 * 109.47032 * 330.00329 * 14 12 10 18 18 C 1.53126 * 109.49758 * 60.00372 * 6 4 3 19 19 C 1.53114 * 109.16239 * 297.71278 * 18 6 4 20 20 C 1.53037 * 109.31211 * 302.32855 * 19 18 6 21 21 N 1.46929 * 109.47910 * 59.15772 * 20 19 18 22 22 C 1.46850 * 111.22205 * 298.28247 * 21 20 19 23 23 H 1.08999 * 109.47197 * 299.99282 * 1 2 3 24 24 H 1.08997 * 109.47350 * 60.00009 * 1 2 3 25 25 H 1.09000 * 109.46468 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46915 * 240.00276 * 2 1 3 27 27 H 1.08997 * 109.47350 * 119.99991 * 2 1 3 28 28 H 1.09001 * 109.46765 * 60.00236 * 9 7 6 29 29 H 1.08997 * 109.47322 * 180.02562 * 9 7 6 30 30 H 1.09002 * 109.47260 * 300.00728 * 9 7 6 31 31 H 0.96998 * 119.99813 * 180.02562 * 13 12 10 32 32 H 1.09006 * 109.51941 * 177.80570 * 18 6 4 33 33 H 1.08997 * 109.57191 * 57.65553 * 18 6 4 34 34 H 1.09002 * 109.50377 * 62.28979 * 19 18 6 35 35 H 1.09003 * 109.50316 * 182.36975 * 19 18 6 36 36 H 1.08994 * 109.46612 * 179.21753 * 20 19 18 37 37 H 1.09007 * 109.46083 * 299.18512 * 20 19 18 38 38 H 1.00903 * 110.98569 * 174.17975 * 21 20 19 39 39 H 1.08997 * 109.46198 * 301.72747 * 22 21 20 40 40 H 1.08999 * 109.45191 * 181.75464 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0000 7 6 5.4487 2.8592 -0.0018 8 1 5.7863 2.3289 0.8886 9 6 6.0318 4.2737 -0.0047 10 6 5.9124 2.1221 -1.2316 11 1 5.1896 1.7474 -1.9413 12 6 7.2595 1.9270 -1.4515 13 7 8.1397 2.3847 -0.5881 14 14 7.8344 1.0139 -2.9764 15 1 8.0474 1.9820 -4.0821 16 1 9.1088 0.3111 -2.6814 17 1 6.8039 0.0229 -3.3779 18 6 3.4485 3.6864 1.2494 19 6 1.9230 3.8127 1.2132 20 6 1.5054 4.5365 -0.0689 21 7 1.9805 3.7801 -1.2355 22 6 3.4460 3.6863 -1.2474 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 5.6963 4.8068 0.8848 29 1 7.1203 4.2180 -0.0064 30 1 5.6940 4.8041 -0.8951 31 1 9.0874 2.2477 -0.7429 32 1 3.8960 4.6801 1.2693 33 1 3.7474 3.1345 2.1406 34 1 1.4750 2.8192 1.2327 35 1 1.5844 4.3817 2.0791 36 1 0.4189 4.6155 -0.1039 37 1 1.9426 5.5350 -0.0811 38 1 1.6371 4.1855 -2.0933 39 1 3.8739 4.6888 -1.2541 40 1 3.7680 3.1480 -2.1388 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711641760.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:09 Heat of formation + Delta-G solvation = -110.007263 kcal Electronic energy + Delta-G solvation = -21052.169456 eV Core-core repulsion = 18058.921643 eV Total energy + Delta-G solvation = -2993.247812 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.82568 -39.28113 -37.47398 -35.92569 -33.71048 -32.52381 -32.33519 -29.73779 -27.39835 -25.48522 -24.64323 -24.14210 -22.47316 -21.79392 -19.75298 -18.41765 -18.13122 -17.29549 -17.19928 -16.77582 -16.24195 -15.33034 -15.16322 -15.05874 -14.84492 -14.22117 -14.05122 -13.66168 -13.59098 -13.47117 -13.33714 -13.02516 -12.85704 -12.68211 -12.56194 -12.41867 -12.21386 -11.96828 -11.94516 -11.57117 -11.38306 -11.12377 -10.99449 -10.83746 -10.57420 -10.37040 -9.13360 -8.04359 -6.10852 1.35274 1.37982 1.47577 1.60034 2.03319 2.44760 3.24039 3.42422 3.92266 3.99000 4.00238 4.11050 4.26258 4.27840 4.37129 4.45389 4.63481 4.66759 4.76740 4.86031 4.93870 5.01260 5.01775 5.03967 5.11286 5.15221 5.22372 5.25391 5.30310 5.35755 5.61213 5.63895 5.78046 5.90747 6.16071 6.23001 6.38121 6.71112 6.91022 7.23260 7.52189 9.01417 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.021767 B = 0.008645 C = 0.007183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.014318 B = 3237.932988 C = 3897.064863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.043 3.957 3 O -0.321 6.321 4 C 0.475 3.525 5 O -0.538 6.538 6 C -0.033 4.033 7 C 0.063 3.937 8 H -0.012 1.012 9 C -0.126 4.126 10 C -0.487 4.487 11 H 0.039 0.961 12 C 0.009 3.991 13 N -0.921 5.921 14 Si 0.941 3.059 15 H -0.268 1.268 16 H -0.286 1.286 17 H -0.283 1.283 18 C -0.112 4.112 19 C -0.123 4.123 20 C 0.067 3.933 21 N -0.686 5.686 22 C 0.088 3.912 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.092 0.908 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.038 0.962 29 H 0.055 0.945 30 H 0.040 0.960 31 H 0.257 0.743 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.032 0.968 38 H 0.350 0.650 39 H 0.049 0.951 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.696 4.108 1.582 17.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.031 4.031 3 O -0.237 6.237 4 C 0.319 3.681 5 O -0.427 6.427 6 C -0.034 4.034 7 C 0.044 3.956 8 H 0.007 0.993 9 C -0.184 4.184 10 C -0.525 4.525 11 H 0.057 0.943 12 C -0.188 4.188 13 N -0.562 5.562 14 Si 0.768 3.232 15 H -0.193 1.193 16 H -0.211 1.211 17 H -0.208 1.208 18 C -0.150 4.150 19 C -0.160 4.160 20 C -0.062 4.062 21 N -0.318 5.318 22 C -0.041 4.041 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.111 0.889 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.050 0.950 38 H 0.169 0.831 39 H 0.067 0.933 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.421 3.194 1.899 16.836 hybrid contribution 1.475 -0.287 -0.994 1.801 sum -14.946 2.907 0.905 15.253 Atomic orbital electron populations 1.21692 0.89681 1.03719 1.03746 1.23145 0.97592 0.81581 1.00773 1.86752 1.23111 1.30486 1.83324 1.23929 0.80567 0.92644 0.70959 1.90652 1.61520 1.44299 1.46191 1.20737 0.96435 0.88065 0.98205 1.18485 0.87551 0.94183 0.95367 0.99345 1.21737 1.02579 0.95827 0.98234 1.21178 0.91318 1.33613 1.06438 0.94298 1.25556 0.97290 0.96905 0.99084 1.69996 1.01300 1.47984 1.36962 0.85808 0.77307 0.79078 0.80978 1.19332 1.21132 1.20805 1.21726 0.98021 1.00469 0.94747 1.21836 0.93363 1.02694 0.98144 1.21901 1.00581 0.93784 0.89893 1.60211 1.08294 1.57105 1.06217 1.21652 0.88218 0.98387 0.95853 0.90941 0.91265 0.88888 0.93581 0.92917 0.94291 0.92627 0.94137 0.93358 0.89831 0.93210 0.90377 0.89498 0.88786 0.94967 0.83056 0.93310 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 10.29 71.98 0.74 -1.90 16 2 C 0.04 1.32 6.19 71.98 0.45 1.77 16 3 O -0.32 -11.43 6.07 -51.41 -0.31 -11.74 16 4 C 0.48 21.04 6.04 71.24 0.43 21.47 16 5 O -0.54 -28.85 14.44 21.96 0.32 -28.53 16 6 C -0.03 -1.35 0.29 -52.87 -0.02 -1.37 16 7 C 0.06 3.24 1.33 -11.54 -0.02 3.22 16 8 H -0.01 -0.69 8.10 -2.39 -0.02 -0.71 16 9 C -0.13 -5.90 8.27 71.98 0.59 -5.31 16 10 C -0.49 -27.88 6.27 25.60 0.16 -27.72 16 11 H 0.04 2.28 6.27 -2.91 -0.02 2.26 16 12 C 0.01 0.50 5.30 84.65 0.45 0.95 16 13 N -0.92 -55.38 11.32 21.45 0.24 -55.14 16 14 Si 0.94 46.72 29.54 68.60 2.03 48.74 16 15 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 16 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 17 H -0.28 -14.22 7.11 99.48 0.71 -13.51 16 18 C -0.11 -3.75 4.49 30.67 0.14 -3.61 16 19 C -0.12 -3.17 5.66 30.64 0.17 -3.00 16 20 C 0.07 1.54 6.56 86.31 0.57 2.11 16 21 N -0.69 -19.13 5.55 -513.81 -2.85 -21.98 16 22 C 0.09 3.19 4.66 86.33 0.40 3.60 16 23 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.05 1.53 8.13 -2.39 -0.02 1.51 16 27 H 0.05 1.64 8.13 -2.39 -0.02 1.62 16 28 H 0.04 1.56 6.38 -2.39 -0.02 1.54 16 29 H 0.05 2.97 6.07 -2.39 -0.01 2.95 16 30 H 0.04 1.76 6.41 -2.39 -0.02 1.74 16 31 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 32 H 0.08 2.62 6.32 -2.38 -0.02 2.61 16 33 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.08 2.21 5.50 -2.39 -0.01 2.20 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.03 0.70 8.14 -2.38 -0.02 0.68 16 38 H 0.35 8.04 8.90 -89.69 -0.80 7.24 16 39 H 0.05 1.70 6.38 -2.39 -0.02 1.68 16 40 H 0.06 2.41 6.66 -2.39 -0.02 2.39 16 Total: -1.00 -69.84 302.14 3.73 -66.11 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.24 Total: 12.34 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 4.07 Total: -9.80 kcal Atomic # 7 Polarization: -74.51 SS G_CDS: -2.61 Total: -77.12 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: 0.01 Total: -40.27 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.74 kcal Total: -69.84 3.73 -66.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711641760.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.894 kcal (2) G-P(sol) polarization free energy of solvation -69.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds