Wall clock time and date at job start Mon Mar 30 2020 04:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.46877 * 2 1 4 4 C 1.37093 * 120.00352 * 263.60391 * 3 2 1 5 5 H 1.08007 * 119.99873 * 194.89838 * 4 3 2 6 6 C 1.38945 * 120.00351 * 14.88862 * 4 3 2 7 7 N 1.31416 * 119.99365 * 12.66370 * 6 4 3 8 8 Si 1.86793 * 120.00634 * 192.66106 * 6 4 3 9 9 H 1.48504 * 109.46872 * 59.99857 * 8 6 4 10 10 H 1.48493 * 109.47502 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47333 * 300.00390 * 8 6 4 12 12 C 1.34780 * 119.99444 * 83.59430 * 3 2 1 13 13 O 1.21287 * 120.00346 * 5.32602 * 12 3 2 14 14 C 1.50700 * 119.99656 * 185.32678 * 12 3 2 15 15 H 1.08998 * 109.47253 * 48.95875 * 14 12 3 16 16 C 1.53005 * 109.47381 * 288.96059 * 14 12 3 17 17 C 1.53000 * 109.47246 * 168.96204 * 14 12 3 18 18 H 1.08993 * 109.48084 * 59.97494 * 17 14 12 19 19 C 1.53089 * 109.48357 * 179.97438 * 17 14 12 20 20 C 1.53178 * 109.16642 * 177.59980 * 19 17 14 21 21 C 1.53179 * 109.03771 * 303.02107 * 20 19 17 22 22 C 1.53090 * 109.16035 * 56.97514 * 21 20 19 23 23 O 1.42903 * 109.42726 * 302.38597 * 22 21 20 24 24 H 1.09000 * 109.47128 * 293.12633 * 1 2 3 25 25 H 1.08997 * 109.47171 * 53.13436 * 1 2 3 26 26 H 1.08996 * 109.46558 * 173.13484 * 1 2 3 27 27 H 1.08998 * 109.47085 * 240.00810 * 2 1 3 28 28 H 1.08996 * 109.47611 * 119.99674 * 2 1 3 29 29 H 0.97001 * 119.99502 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.46678 * 54.22384 * 16 14 12 31 31 H 1.08997 * 109.47243 * 174.22650 * 16 14 12 32 32 H 1.09006 * 109.46987 * 294.22861 * 16 14 12 33 33 H 1.08999 * 109.52412 * 57.69417 * 19 17 14 34 34 H 1.09001 * 109.57753 * 297.53924 * 19 17 14 35 35 H 1.08997 * 109.54654 * 183.14791 * 20 19 17 36 36 H 1.09007 * 109.53900 * 62.88964 * 20 19 17 37 37 H 1.09002 * 109.52126 * 297.07365 * 21 20 19 38 38 H 1.08993 * 109.52044 * 176.88070 * 21 20 19 39 39 H 1.09002 * 109.47765 * 62.37847 * 22 21 20 40 40 H 1.09002 * 109.47935 * 182.39891 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3715 1.9836 -1.1798 5 1 2.9494 2.8960 -1.1686 6 6 1.9862 1.4201 -2.3901 7 7 1.0852 0.4638 -2.4123 8 14 2.7490 2.0220 -3.9855 9 1 4.2182 1.8099 -3.9426 10 1 2.1732 1.2650 -5.1259 11 1 2.4625 3.4690 -4.1562 12 6 2.1201 2.0600 1.1600 13 8 1.9004 1.4985 2.2124 14 6 2.5069 3.5164 1.1493 15 1 1.8937 4.0499 0.4231 16 6 3.9823 3.6496 0.7667 17 6 2.2851 4.1132 2.5406 18 1 2.8979 3.5796 3.2669 19 6 2.6786 5.5927 2.5302 20 6 2.3974 6.1975 3.9091 21 6 0.9190 5.9916 4.2530 22 6 0.5935 4.4968 4.1968 23 8 0.9066 3.9907 2.8976 24 1 -0.3633 0.4036 0.9451 25 1 -0.3633 0.6165 -0.8222 26 1 -0.3632 -1.0203 -0.1228 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 0.8159 0.0707 -3.2572 30 1 4.1607 3.1345 -0.1773 31 1 4.2360 4.7041 0.6588 32 1 4.6014 3.2048 1.5459 33 1 2.0948 6.1196 1.7755 34 1 3.7400 5.6867 2.3008 35 1 2.6229 7.2638 3.8925 36 1 3.0180 5.7040 4.6571 37 1 0.2996 6.5266 3.5331 38 1 0.7224 6.3698 5.2562 39 1 1.1840 3.9679 4.9450 40 1 -0.4672 4.3479 4.3990 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711914314.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:23 Heat of formation + Delta-G solvation = -82.672164 kcal Electronic energy + Delta-G solvation = -20538.967136 eV Core-core repulsion = 17546.904662 eV Total energy + Delta-G solvation = -2992.062473 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.48035 -38.09379 -34.92990 -33.68669 -33.20309 -31.37903 -30.01036 -28.66147 -25.09191 -24.48364 -24.07618 -22.51802 -20.72597 -19.85916 -18.80716 -16.92928 -16.22675 -15.74876 -15.41189 -14.47294 -14.33735 -14.14950 -14.01250 -13.57969 -13.26077 -12.81837 -12.56204 -12.31215 -12.28950 -11.82557 -11.46953 -11.34292 -11.18288 -11.07699 -11.00210 -10.90862 -10.65798 -10.46733 -10.33188 -10.23306 -9.97548 -9.78817 -9.62933 -8.94953 -8.79625 -8.11544 -7.61364 -6.22908 -3.82147 3.14238 3.22329 3.22799 4.03805 4.12146 4.26509 4.75765 4.96348 5.04756 5.07803 5.16376 5.34779 5.48887 5.61250 5.71166 5.80691 5.89890 5.94296 6.00586 6.04384 6.11834 6.14668 6.18303 6.41032 6.44150 6.52810 6.68850 6.76182 6.82770 6.93208 7.01223 7.18529 7.43602 7.57851 7.82335 7.88594 7.92552 8.56049 9.17089 9.69088 10.09865 10.72627 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.026227 B = 0.006858 C = 0.005955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.342934 B = 4082.063192 C = 4700.754837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.137 3.863 3 N -0.446 5.446 4 C -0.332 4.332 5 H 0.105 0.895 6 C 0.030 3.970 7 N -0.866 5.866 8 Si 0.919 3.081 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.469 3.531 13 O -0.601 6.601 14 C -0.087 4.087 15 H 0.092 0.908 16 C -0.148 4.148 17 C 0.116 3.884 18 H 0.058 0.942 19 C -0.153 4.153 20 C -0.120 4.120 21 C -0.156 4.156 22 C 0.063 3.937 23 O -0.360 6.360 24 H 0.022 0.978 25 H 0.081 0.919 26 H 0.031 0.969 27 H 0.098 0.902 28 H 0.030 0.970 29 H 0.266 0.734 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.045 0.955 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.641 8.696 6.099 10.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.014 3.986 3 N -0.164 5.164 4 C -0.460 4.460 5 H 0.122 0.878 6 C -0.173 4.173 7 N -0.505 5.505 8 Si 0.746 3.254 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.200 1.200 12 C 0.257 3.743 13 O -0.487 6.487 14 C -0.109 4.109 15 H 0.110 0.890 16 C -0.205 4.205 17 C 0.058 3.942 18 H 0.076 0.924 19 C -0.191 4.191 20 C -0.158 4.158 21 C -0.194 4.194 22 C -0.015 4.015 23 O -0.279 6.279 24 H 0.041 0.959 25 H 0.100 0.900 26 H 0.050 0.950 27 H 0.115 0.885 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.293 8.174 6.304 10.574 hybrid contribution 0.394 0.473 -0.778 0.992 sum 2.686 8.648 5.526 10.608 Atomic orbital electron populations 1.21920 0.97079 0.99855 1.00326 1.21170 0.94200 0.83308 0.99900 1.43759 1.56021 1.11354 1.05301 1.19888 1.32718 1.10369 0.82988 0.87772 1.25271 0.95680 0.97026 0.99349 1.70145 1.27785 1.26103 1.26511 0.86121 0.79298 0.78760 0.81221 1.20012 1.20936 1.19967 1.19836 0.82672 0.87814 0.83995 1.90503 1.56715 1.70172 1.31280 1.20999 0.98050 0.96014 0.95788 0.88980 1.21925 0.93918 1.01381 1.03293 1.21811 0.83337 0.92860 0.96231 0.92390 1.22304 1.02047 0.97328 0.97374 1.21573 0.96282 1.00538 0.97394 1.22218 0.97130 0.98381 1.01676 1.22440 1.00677 0.92057 0.86292 1.88054 1.25544 1.81934 1.32333 0.95918 0.90043 0.94957 0.88455 0.95124 0.92355 0.89557 0.92751 0.93054 0.91191 0.90803 0.91973 0.92074 0.91297 0.91536 0.93680 0.89577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 9.49 37.16 0.35 -2.95 16 2 C 0.14 3.53 5.28 -4.04 -0.02 3.51 16 3 N -0.45 -11.58 2.64 -114.81 -0.30 -11.88 16 4 C -0.33 -8.34 8.48 -14.94 -0.13 -8.47 16 5 H 0.10 2.42 4.57 -52.48 -0.24 2.18 16 6 C 0.03 0.75 5.13 -17.47 -0.09 0.66 16 7 N -0.87 -22.25 8.16 55.50 0.45 -21.80 16 8 Si 0.92 19.27 29.57 -169.99 -5.03 14.25 16 9 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 10 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 11 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 12 C 0.47 11.81 6.65 -10.98 -0.07 11.73 16 13 O -0.60 -16.63 15.20 -8.11 -0.12 -16.76 16 14 C -0.09 -1.79 1.71 -91.77 -0.16 -1.94 16 15 H 0.09 1.95 7.76 -51.93 -0.40 1.55 16 16 C -0.15 -2.56 8.26 37.16 0.31 -2.26 16 17 C 0.12 2.14 1.75 -26.69 -0.05 2.09 16 18 H 0.06 1.13 7.98 -51.93 -0.41 0.71 16 19 C -0.15 -2.17 4.99 -26.59 -0.13 -2.31 16 20 C -0.12 -1.46 6.03 -26.55 -0.16 -1.62 16 21 C -0.16 -1.93 6.14 -26.59 -0.16 -2.09 16 22 C 0.06 0.96 6.84 37.20 0.25 1.22 16 23 O -0.36 -7.27 9.60 -48.89 -0.47 -7.74 16 24 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 2.15 6.47 -51.93 -0.34 1.82 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.10 2.56 5.89 -51.93 -0.31 2.26 16 28 H 0.03 0.79 7.55 -51.93 -0.39 0.40 16 29 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 30 H 0.09 1.61 5.37 -51.93 -0.28 1.33 16 31 H 0.05 0.77 6.81 -51.93 -0.35 0.42 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.94 6.71 -51.93 -0.35 0.59 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 306.04 15.07 4.61 4.61 Total: -1.00 -29.43 306.04 -7.35 -36.78 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.43 Total: 4.96 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -0.06 Total: -2.43 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: 0.15 Total: -33.68 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.59 Total: -24.49 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.43 -7.35 -36.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711914314.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.892 kcal (2) G-P(sol) polarization free energy of solvation -29.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds