Wall clock time and date at job start Mon Mar 30 2020 04:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36935 * 120.00165 * 2 1 4 4 H 1.07998 * 119.99985 * 321.96980 * 3 2 1 5 5 C 1.38818 * 119.99714 * 141.96793 * 3 2 1 6 6 N 1.31620 * 119.99711 * 157.13415 * 5 3 2 7 7 Si 1.86795 * 120.00097 * 337.13743 * 5 3 2 8 8 H 1.48494 * 109.47263 * 95.67615 * 7 5 3 9 9 H 1.48500 * 109.46998 * 215.67842 * 7 5 3 10 10 H 1.48510 * 109.47076 * 335.67780 * 7 5 3 11 11 C 1.46499 * 119.99363 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.47358 * 89.99804 * 11 2 1 13 13 H 1.09000 * 110.41431 * 307.29406 * 12 11 2 14 14 C 1.54627 * 110.36930 * 184.99702 * 12 11 2 15 15 C 1.53934 * 103.98383 * 217.34690 * 14 12 11 16 16 C 1.53883 * 104.65499 * 0.10868 * 15 14 12 17 17 O 1.44567 * 104.68663 * 23.54941 * 16 15 14 18 18 C 1.52482 * 110.32298 * 241.35814 * 15 14 12 19 19 C 1.53221 * 109.20925 * 293.06502 * 18 15 14 20 20 O 1.42910 * 109.32400 * 303.46967 * 19 18 15 21 21 C 1.42915 * 114.23699 * 61.67361 * 20 19 18 22 22 C 1.52475 * 110.32902 * 118.86905 * 15 14 12 23 23 H 1.09001 * 109.47083 * 265.67886 * 1 2 3 24 24 H 1.09004 * 109.47462 * 25.67447 * 1 2 3 25 25 H 1.09000 * 109.47943 * 145.67759 * 1 2 3 26 26 H 0.96999 * 119.99348 * 180.02562 * 6 5 3 27 27 H 1.09004 * 109.47524 * 329.99068 * 11 2 1 28 28 H 1.09002 * 109.46753 * 209.99405 * 11 2 1 29 29 H 1.08993 * 110.55220 * 98.67680 * 14 12 11 30 30 H 1.09007 * 110.54975 * 336.00781 * 14 12 11 31 31 H 1.09000 * 110.39600 * 142.34396 * 16 15 14 32 32 H 1.08994 * 110.39722 * 264.74449 * 16 15 14 33 33 H 1.09001 * 109.51549 * 52.98789 * 18 15 14 34 34 H 1.09005 * 109.51311 * 173.14662 * 18 15 14 35 35 H 1.08996 * 109.49504 * 183.51500 * 19 18 15 36 36 H 1.09004 * 109.49420 * 63.42707 * 19 18 15 37 37 H 1.09004 * 109.49768 * 178.36895 * 21 20 19 38 38 H 1.09004 * 109.50225 * 58.27833 * 21 20 19 39 39 H 1.09004 * 109.51339 * 186.84553 * 22 15 14 40 40 H 1.08997 * 109.51692 * 306.94735 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7817 2.0219 -0.5762 5 6 3.3168 1.3134 0.7407 6 7 4.2030 2.2320 0.4194 7 14 3.6296 0.1814 2.1933 8 1 4.4686 -0.9635 1.7569 9 1 4.3343 0.9322 3.2632 10 1 2.3342 -0.3246 2.7145 11 6 2.1973 -1.2688 -0.0006 12 6 2.4523 -1.7099 -1.4432 13 1 1.5201 -1.7203 -2.0080 14 6 3.1132 -3.1076 -1.4699 15 6 4.1138 -3.0237 -2.6366 16 6 3.9541 -1.5946 -3.1845 17 8 3.4152 -0.8360 -2.0781 18 6 3.7618 -4.0471 -3.7108 19 6 3.9807 -5.4577 -3.1542 20 8 5.3302 -5.5831 -2.7008 21 6 5.6790 -4.6884 -1.6424 22 6 5.5357 -3.2436 -2.1319 23 1 -0.3633 -0.0774 1.0248 24 1 -0.3634 0.9262 -0.4453 25 1 -0.3635 -0.8487 -0.5794 26 1 5.0187 2.3208 0.9368 27 1 1.6083 -2.0286 0.5131 28 1 3.1498 -1.1387 0.5133 29 1 2.3678 -3.8798 -1.6598 30 1 3.6341 -3.3024 -0.5324 31 1 4.9217 -1.1926 -3.4850 32 1 3.2603 -1.5854 -4.0251 33 1 2.7176 -3.9275 -3.9994 34 1 4.4006 -3.8958 -4.5810 35 1 3.7905 -6.1914 -3.9374 36 1 3.2995 -5.6297 -2.3208 37 1 6.7102 -4.8689 -1.3384 38 1 5.0151 -4.8524 -0.7935 39 1 6.2419 -3.0619 -2.9421 40 1 5.7405 -2.5577 -1.3099 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712688479.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:46 Heat of formation + Delta-G solvation = -67.282908 kcal Electronic energy + Delta-G solvation = -20653.720528 eV Core-core repulsion = 17662.325383 eV Total energy + Delta-G solvation = -2991.395145 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.43327 -37.90515 -35.58157 -33.58072 -31.57624 -31.24233 -30.29102 -27.27522 -26.28700 -25.34045 -23.72748 -22.49948 -21.62325 -20.47289 -18.71737 -16.81262 -16.46766 -16.11522 -15.41781 -15.19395 -15.13790 -14.63268 -14.26987 -14.02175 -13.65459 -13.41402 -12.85939 -12.70751 -12.40227 -12.16301 -11.87741 -11.57780 -11.38221 -11.29737 -11.24904 -11.02217 -10.77447 -10.65385 -10.34485 -10.27070 -10.09250 -9.81064 -9.53489 -9.41891 -8.96843 -8.37482 -6.72314 -5.85749 -3.25906 3.35368 3.50624 3.55542 3.81829 4.37637 4.58135 4.62652 4.66542 4.92810 4.99428 5.03336 5.14279 5.21416 5.37025 5.51984 5.53887 5.56032 5.58298 5.62079 5.72665 5.74284 5.88848 5.99673 6.01911 6.07078 6.12276 6.22618 6.28985 6.33088 6.37382 6.37830 6.60671 6.72990 6.83165 7.13277 7.60351 8.17283 8.50502 9.07989 9.84302 10.22393 11.30580 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.026129 B = 0.007167 C = 0.006688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.330063 B = 3905.643405 C = 4185.439324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.608 5.608 3 C -0.257 4.257 4 H 0.075 0.925 5 C 0.043 3.957 6 N -0.897 5.897 7 Si 0.871 3.129 8 H -0.287 1.287 9 H -0.302 1.302 10 H -0.272 1.272 11 C 0.141 3.859 12 C 0.063 3.937 13 H 0.056 0.944 14 C -0.147 4.147 15 C -0.092 4.092 16 C 0.050 3.950 17 O -0.326 6.326 18 C -0.139 4.139 19 C 0.061 3.939 20 O -0.386 6.386 21 C 0.061 3.939 22 C -0.140 4.140 23 H 0.006 0.994 24 H 0.045 0.955 25 H 0.024 0.976 26 H 0.260 0.740 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.092 0.908 38 H 0.051 0.949 39 H 0.071 0.929 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.712 -15.270 -6.361 16.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.331 5.331 3 C -0.385 4.385 4 H 0.093 0.907 5 C -0.157 4.157 6 N -0.538 5.538 7 Si 0.702 3.298 8 H -0.215 1.215 9 H -0.230 1.230 10 H -0.197 1.197 11 C 0.015 3.985 12 C 0.003 3.997 13 H 0.074 0.926 14 C -0.185 4.185 15 C -0.093 4.093 16 C -0.028 4.028 17 O -0.243 6.243 18 C -0.177 4.177 19 C -0.015 4.015 20 O -0.305 6.305 21 C -0.016 4.016 22 C -0.178 4.178 23 H 0.024 0.976 24 H 0.064 0.936 25 H 0.043 0.957 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.413 -15.049 -6.315 16.326 hybrid contribution 0.083 -0.595 0.798 0.998 sum -0.330 -15.644 -5.517 16.592 Atomic orbital electron populations 1.21084 0.84706 0.99004 0.97284 1.43986 1.00608 1.02010 1.86490 1.18650 1.06110 0.90344 1.23434 0.90746 1.25357 0.96623 0.96086 0.97665 1.69896 1.08346 1.36270 1.39283 0.87007 0.77740 0.80340 0.84708 1.21488 1.23005 1.19731 1.21321 0.96943 0.88269 0.91963 1.23839 0.91598 0.86730 0.97567 0.92601 1.23171 0.98099 0.98984 0.98285 1.21499 0.95682 0.96508 0.95599 1.23362 0.99009 0.89255 0.91191 1.89601 1.56359 1.35982 1.42376 1.22113 1.02174 0.95034 0.98387 1.22611 0.83814 0.96458 0.98661 1.87877 1.29044 1.59552 1.54017 1.22650 1.00839 0.88850 0.89261 1.22128 0.95910 0.97392 1.02328 0.97574 0.93589 0.95744 0.93030 0.93214 0.91987 0.91162 0.90893 0.89785 0.93163 0.90750 0.90958 0.89152 0.93109 0.88952 0.93040 0.91036 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.55 10.70 59.85 0.64 3.19 16 2 N -0.61 -15.00 2.47 -181.11 -0.45 -15.45 16 3 C -0.26 -7.46 9.64 -15.06 -0.15 -7.60 16 4 H 0.07 2.35 8.06 -52.49 -0.42 1.92 16 5 C 0.04 1.28 5.29 -17.43 -0.09 1.19 16 6 N -0.90 -28.20 13.97 55.49 0.78 -27.43 16 7 Si 0.87 22.75 25.10 -169.99 -4.27 18.48 16 8 H -0.29 -7.22 6.68 56.52 0.38 -6.84 16 9 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 10 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 11 C 0.14 3.12 4.16 -4.04 -0.02 3.10 16 12 C 0.06 1.22 3.55 -25.88 -0.09 1.13 16 13 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 14 C -0.15 -2.23 4.94 -25.39 -0.13 -2.35 16 15 C -0.09 -1.30 0.69 -154.10 -0.11 -1.41 16 16 C 0.05 0.83 6.74 37.62 0.25 1.08 16 17 O -0.33 -7.27 11.11 -35.23 -0.39 -7.66 16 18 C -0.14 -1.58 4.62 -26.88 -0.12 -1.71 16 19 C 0.06 0.66 6.64 37.27 0.25 0.91 16 20 O -0.39 -4.97 10.75 -35.23 -0.38 -5.35 16 21 C 0.06 0.74 6.64 37.27 0.25 0.99 16 22 C -0.14 -1.92 4.63 -26.89 -0.12 -2.05 16 23 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 24 H 0.05 0.93 8.01 -51.93 -0.42 0.51 16 25 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 26 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 27 H 0.05 0.96 8.07 -51.93 -0.42 0.54 16 28 H 0.06 1.52 3.38 -51.93 -0.18 1.35 16 29 H 0.07 0.90 6.87 -51.93 -0.36 0.54 16 30 H 0.07 1.14 6.61 -51.92 -0.34 0.79 16 31 H 0.08 1.35 7.84 -51.93 -0.41 0.95 16 32 H 0.05 0.77 7.85 -51.93 -0.41 0.36 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.53 7.03 -51.93 -0.36 0.16 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.05 0.62 7.03 -51.93 -0.37 0.26 16 39 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 304.82 15.07 4.59 4.59 Total: -1.00 -32.93 304.82 -6.19 -39.12 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -6.64 Total: -2.80 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 0.56 Total: -3.53 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.33 Total: -42.87 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.77 Total: -13.01 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.27 Total: 18.48 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.93 -6.19 -39.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712688479.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.159 kcal (2) G-P(sol) polarization free energy of solvation -32.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds