Wall clock time and date at job start Mon Mar 30 2020 04:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36935 * 120.00165 * 2 1 4 4 H 1.07998 * 119.99985 * 321.96980 * 3 2 1 5 5 C 1.38818 * 119.99714 * 141.96793 * 3 2 1 6 6 N 1.31620 * 119.99711 * 157.13415 * 5 3 2 7 7 Si 1.86795 * 120.00097 * 337.13743 * 5 3 2 8 8 H 1.48494 * 109.47263 * 95.67615 * 7 5 3 9 9 H 1.48500 * 109.46998 * 215.67842 * 7 5 3 10 10 H 1.48510 * 109.47076 * 335.67780 * 7 5 3 11 11 C 1.46499 * 119.99363 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.47358 * 89.99804 * 11 2 1 13 13 H 1.09000 * 110.41431 * 307.29406 * 12 11 2 14 14 C 1.54627 * 110.36930 * 184.99702 * 12 11 2 15 15 C 1.53934 * 103.98383 * 217.34690 * 14 12 11 16 16 C 1.53883 * 104.65499 * 0.10868 * 15 14 12 17 17 O 1.44567 * 104.68663 * 23.54941 * 16 15 14 18 18 C 1.52482 * 110.32298 * 241.35814 * 15 14 12 19 19 C 1.53221 * 109.20925 * 293.06502 * 18 15 14 20 20 O 1.42910 * 109.32400 * 303.46967 * 19 18 15 21 21 C 1.42915 * 114.23699 * 61.67361 * 20 19 18 22 22 C 1.52475 * 110.32902 * 118.86905 * 15 14 12 23 23 H 1.09001 * 109.47083 * 265.67886 * 1 2 3 24 24 H 1.09004 * 109.47462 * 25.67447 * 1 2 3 25 25 H 1.09000 * 109.47943 * 145.67759 * 1 2 3 26 26 H 0.96999 * 119.99348 * 180.02562 * 6 5 3 27 27 H 1.09004 * 109.47524 * 329.99068 * 11 2 1 28 28 H 1.09002 * 109.46753 * 209.99405 * 11 2 1 29 29 H 1.08993 * 110.55220 * 98.67680 * 14 12 11 30 30 H 1.09007 * 110.54975 * 336.00781 * 14 12 11 31 31 H 1.09000 * 110.39600 * 142.34396 * 16 15 14 32 32 H 1.08994 * 110.39722 * 264.74449 * 16 15 14 33 33 H 1.09001 * 109.51549 * 52.98789 * 18 15 14 34 34 H 1.09005 * 109.51311 * 173.14662 * 18 15 14 35 35 H 1.08996 * 109.49504 * 183.51500 * 19 18 15 36 36 H 1.09004 * 109.49420 * 63.42707 * 19 18 15 37 37 H 1.09004 * 109.49768 * 178.36895 * 21 20 19 38 38 H 1.09004 * 109.50225 * 58.27833 * 21 20 19 39 39 H 1.09004 * 109.51339 * 186.84553 * 22 15 14 40 40 H 1.08997 * 109.51692 * 306.94735 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7817 2.0219 -0.5762 5 6 3.3168 1.3134 0.7407 6 7 4.2030 2.2320 0.4194 7 14 3.6296 0.1814 2.1933 8 1 4.4686 -0.9635 1.7569 9 1 4.3343 0.9322 3.2632 10 1 2.3342 -0.3246 2.7145 11 6 2.1973 -1.2688 -0.0006 12 6 2.4523 -1.7099 -1.4432 13 1 1.5201 -1.7203 -2.0080 14 6 3.1132 -3.1076 -1.4699 15 6 4.1138 -3.0237 -2.6366 16 6 3.9541 -1.5946 -3.1845 17 8 3.4152 -0.8360 -2.0781 18 6 3.7618 -4.0471 -3.7108 19 6 3.9807 -5.4577 -3.1542 20 8 5.3302 -5.5831 -2.7008 21 6 5.6790 -4.6884 -1.6424 22 6 5.5357 -3.2436 -2.1319 23 1 -0.3633 -0.0774 1.0248 24 1 -0.3634 0.9262 -0.4453 25 1 -0.3635 -0.8487 -0.5794 26 1 5.0187 2.3208 0.9368 27 1 1.6083 -2.0286 0.5131 28 1 3.1498 -1.1387 0.5133 29 1 2.3678 -3.8798 -1.6598 30 1 3.6341 -3.3024 -0.5324 31 1 4.9217 -1.1926 -3.4850 32 1 3.2603 -1.5854 -4.0251 33 1 2.7176 -3.9275 -3.9994 34 1 4.4006 -3.8958 -4.5810 35 1 3.7905 -6.1914 -3.9374 36 1 3.2995 -5.6297 -2.3208 37 1 6.7102 -4.8689 -1.3384 38 1 5.0151 -4.8524 -0.7935 39 1 6.2419 -3.0619 -2.9421 40 1 5.7405 -2.5577 -1.3099 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712688479.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:45 Heat of formation + Delta-G solvation = -90.646996 kcal Electronic energy + Delta-G solvation = -20654.733671 eV Core-core repulsion = 17662.325383 eV Total energy + Delta-G solvation = -2992.408288 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.59058 -39.13152 -37.37986 -34.81118 -33.74256 -32.16316 -31.82998 -28.50426 -27.99787 -27.06162 -24.65997 -23.55802 -23.37836 -22.17756 -19.83472 -18.83246 -17.75335 -17.04788 -16.99593 -16.59817 -16.46112 -15.96072 -15.57426 -15.50432 -15.17321 -14.84954 -14.60266 -14.28505 -13.94478 -13.39800 -13.27879 -13.17904 -12.76748 -12.62524 -12.46244 -12.37786 -12.30240 -12.21952 -12.05885 -11.62922 -11.53283 -11.37444 -11.09205 -10.66900 -10.51943 -10.30668 -8.71919 -8.13670 -5.50589 1.27792 1.38132 1.49234 2.45425 2.95838 3.02464 3.11006 3.45260 3.52071 3.63516 3.82320 4.04587 4.09437 4.16449 4.23194 4.28538 4.43559 4.52684 4.54493 4.61361 4.69191 4.71579 4.72122 4.77649 4.79321 4.85375 4.92358 4.96097 5.04447 5.10761 5.11785 5.17055 5.27575 5.32931 5.97256 6.17104 6.24559 6.25706 7.03642 7.68391 8.08586 9.07041 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.026129 B = 0.007167 C = 0.006688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.330063 B = 3905.643405 C = 4185.439324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.623 5.623 3 C -0.246 4.246 4 H 0.030 0.970 5 C -0.015 4.015 6 N -0.948 5.948 7 Si 0.940 3.060 8 H -0.275 1.275 9 H -0.309 1.309 10 H -0.258 1.258 11 C 0.133 3.867 12 C 0.062 3.938 13 H 0.064 0.936 14 C -0.137 4.137 15 C -0.086 4.086 16 C 0.044 3.956 17 O -0.382 6.382 18 C -0.133 4.133 19 C 0.058 3.942 20 O -0.398 6.398 21 C 0.065 3.935 22 C -0.140 4.140 23 H 0.018 0.982 24 H 0.037 0.963 25 H 0.060 0.940 26 H 0.259 0.741 27 H 0.085 0.915 28 H 0.035 0.965 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.060 0.940 37 H 0.104 0.896 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.754 -18.759 -6.420 19.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.348 5.348 3 C -0.375 4.375 4 H 0.048 0.952 5 C -0.211 4.211 6 N -0.592 5.592 7 Si 0.769 3.231 8 H -0.202 1.202 9 H -0.237 1.237 10 H -0.182 1.182 11 C 0.008 3.992 12 C 0.002 3.998 13 H 0.081 0.919 14 C -0.175 4.175 15 C -0.086 4.086 16 C -0.033 4.033 17 O -0.301 6.301 18 C -0.171 4.171 19 C -0.019 4.019 20 O -0.317 6.317 21 C -0.012 4.012 22 C -0.178 4.178 23 H 0.036 0.964 24 H 0.056 0.944 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.053 0.947 29 H 0.121 0.879 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.131 0.869 36 H 0.078 0.922 37 H 0.122 0.878 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.490 -18.586 -6.383 19.708 hybrid contribution 0.341 0.549 0.694 0.948 sum -1.150 -18.038 -5.689 18.948 Atomic orbital electron populations 1.21202 0.82219 1.00238 0.98538 1.44136 1.02282 1.01483 1.86877 1.18473 1.06068 0.91129 1.21880 0.95236 1.25977 0.96581 0.98270 1.00274 1.70037 1.09195 1.39235 1.40776 0.85893 0.78178 0.78495 0.80497 1.20250 1.23738 1.18189 1.21468 0.95927 0.87816 0.93968 1.23780 0.91928 0.88473 0.95600 0.91852 1.23118 0.98701 0.97122 0.98538 1.21445 0.95595 0.95514 0.96072 1.23555 0.98840 0.90556 0.90384 1.89539 1.57450 1.38713 1.44373 1.22095 1.03146 0.94477 0.97346 1.22807 0.83010 0.96385 0.99656 1.87875 1.30343 1.59412 1.54062 1.22633 1.01808 0.87499 0.89247 1.22105 0.96008 0.98136 1.01530 0.96356 0.94438 0.92129 0.93258 0.89721 0.94677 0.87859 0.91309 0.90421 0.91769 0.89242 0.90650 0.86854 0.92208 0.87816 0.92624 0.90815 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.75 10.70 127.77 1.37 6.12 16 2 N -0.62 -30.23 2.47 -726.92 -1.79 -32.03 16 3 C -0.25 -14.63 9.64 84.04 0.81 -13.82 16 4 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 5 C -0.01 -0.91 5.29 84.86 0.45 -0.46 16 6 N -0.95 -62.08 13.97 21.65 0.30 -61.78 16 7 Si 0.94 47.77 25.10 68.60 1.72 49.49 16 8 H -0.28 -13.31 6.68 99.48 0.66 -12.64 16 9 H -0.31 -15.83 7.11 99.48 0.71 -15.12 16 10 H -0.26 -12.32 7.11 99.48 0.71 -11.62 16 11 C 0.13 5.61 4.16 86.38 0.36 5.97 16 12 C 0.06 2.28 3.55 31.15 0.11 2.39 16 13 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 14 C -0.14 -3.72 4.94 31.46 0.16 -3.57 16 15 C -0.09 -2.23 0.69 -51.91 -0.04 -2.27 16 16 C 0.04 1.43 6.74 72.28 0.49 1.92 16 17 O -0.38 -17.18 11.11 -148.98 -1.66 -18.84 16 18 C -0.13 -2.54 4.62 30.50 0.14 -2.40 16 19 C 0.06 1.00 6.64 72.06 0.48 1.48 16 20 O -0.40 -8.92 10.75 -148.98 -1.60 -10.52 16 21 C 0.06 1.43 6.64 72.06 0.48 1.91 16 22 C -0.14 -3.67 4.63 30.49 0.14 -3.53 16 23 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.04 1.49 8.01 -2.38 -0.02 1.47 16 25 H 0.06 1.91 8.10 -2.39 -0.02 1.89 16 26 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 27 H 0.08 2.93 8.07 -2.39 -0.02 2.91 16 28 H 0.04 1.68 3.38 -2.39 -0.01 1.67 16 29 H 0.10 2.13 6.87 -2.39 -0.02 2.11 16 30 H 0.07 1.95 6.61 -2.38 -0.02 1.93 16 31 H 0.08 2.55 7.84 -2.39 -0.02 2.53 16 32 H 0.06 1.87 7.85 -2.39 -0.02 1.86 16 33 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 0.95 7.03 -2.38 -0.02 0.93 16 37 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.06 1.18 7.03 -2.39 -0.02 1.17 16 39 H 0.07 1.86 8.13 -2.38 -0.02 1.84 16 40 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -73.74 304.82 2.88 -70.87 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.96 Total: 9.06 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 4.94 Total: -6.26 kcal Atomic # 7 Polarization: -92.32 SS G_CDS: -1.49 Total: -93.81 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -3.26 Total: -29.36 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 1.72 Total: 49.49 kcal Total: -73.74 2.88 -70.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712688479.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.781 kcal (2) G-P(sol) polarization free energy of solvation -73.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds