Wall clock time and date at job start Mon Mar 30 2020 05:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.48561 * 111.00239 * 2 1 4 4 C 1.54382 * 104.59608 * 200.95711 * 3 2 1 5 5 C 1.54259 * 105.06032 * 23.85756 * 4 3 2 6 6 C 1.52997 * 110.32840 * 118.89325 * 5 4 3 7 7 N 1.46903 * 110.32242 * 241.00112 * 5 4 3 8 8 C 1.46896 * 111.00404 * 178.57196 * 7 5 4 9 9 C 1.50695 * 109.47607 * 179.97438 * 8 7 5 10 10 O 1.21283 * 119.99636 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00343 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00302 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47307 * 179.97438 * 12 11 9 14 14 H 1.07999 * 120.00165 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00176 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99946 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00292 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47046 * 90.00477 * 17 15 13 19 19 H 1.48495 * 109.47287 * 210.00451 * 17 15 13 20 20 H 1.48498 * 109.47237 * 330.00547 * 17 15 13 21 21 C 1.48558 * 111.00083 * 244.58059 * 2 1 3 22 22 H 1.09000 * 109.47024 * 60.12735 * 1 2 3 23 23 H 1.08998 * 109.47244 * 180.12433 * 1 2 3 24 24 H 1.08997 * 109.47124 * 300.12404 * 1 2 3 25 25 H 1.08998 * 110.40848 * 82.17987 * 3 2 1 26 26 H 1.08998 * 110.41135 * 319.73789 * 3 2 1 27 27 H 1.08993 * 110.32340 * 264.95598 * 4 3 2 28 28 H 1.08999 * 110.40831 * 142.78843 * 4 3 2 29 29 H 1.09002 * 109.47153 * 59.99730 * 6 5 4 30 30 H 1.09001 * 109.46832 * 299.99921 * 6 5 4 31 31 H 1.09004 * 109.47261 * 179.97438 * 6 5 4 32 32 H 1.00896 * 110.99624 * 302.52347 * 7 5 4 33 33 H 1.09006 * 109.46794 * 300.00301 * 8 7 5 34 34 H 1.09000 * 109.46847 * 59.99364 * 8 7 5 35 35 H 0.97008 * 119.99978 * 0.02562 * 11 9 8 36 36 H 1.08996 * 109.47191 * 300.00432 * 12 11 9 37 37 H 1.09011 * 109.46772 * 60.00412 * 12 11 9 38 38 H 0.96995 * 120.00399 * 179.97438 * 16 15 13 39 39 H 1.09000 * 110.41322 * 40.26590 * 21 2 1 40 40 H 1.09004 * 110.41245 * 277.81947 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2501 -0.5344 5 6 3.4433 -0.0539 -1.3585 6 6 3.7948 0.2400 -2.8183 7 7 4.3952 -1.0172 -0.7894 8 6 4.3827 -2.2779 -1.5432 9 6 5.3696 -3.2387 -0.9319 10 8 6.0192 -2.9061 0.0368 11 7 5.5297 -4.4679 -1.4609 12 6 6.4896 -5.4017 -0.8669 13 6 6.4757 -6.6955 -1.6394 14 1 5.8180 -6.8106 -2.4883 15 6 7.3035 -7.7320 -1.2633 16 7 8.1048 -7.5918 -0.2300 17 14 7.2868 -9.3355 -2.2213 18 1 8.2844 -9.2666 -3.3192 19 1 7.6280 -10.4589 -1.3121 20 1 5.9346 -9.5557 -2.7943 21 6 2.0013 -0.5953 -1.2526 22 1 -0.3633 0.5119 -0.8911 23 1 -0.3633 -1.0276 0.0022 24 1 -0.3633 0.5157 0.8888 25 1 2.0078 1.7916 1.0121 26 1 1.4099 2.0212 -0.6602 27 1 4.1482 1.1748 0.2935 28 1 3.6954 2.0992 -1.1695 29 1 4.7848 0.6930 -2.8695 30 1 3.0591 0.9260 -3.2381 31 1 3.7912 -0.6899 -3.3872 32 1 5.3251 -0.6275 -0.7520 33 1 3.3833 -2.7120 -1.5086 34 1 4.6589 -2.0842 -2.5797 35 1 5.0099 -4.7340 -2.2354 36 1 7.4887 -4.9674 -0.9026 37 1 6.2143 -5.5951 0.1700 38 1 8.6869 -8.3210 0.0350 39 1 1.4099 -0.2712 -2.1089 40 1 2.0078 -1.6832 -1.1838 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716595334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:09 Heat of formation + Delta-G solvation = -28.017611 kcal Electronic energy + Delta-G solvation = -19099.668616 eV Core-core repulsion = 16142.268893 eV Total energy + Delta-G solvation = -2957.399723 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 3.81 seconds Orbital eigenvalues (eV) -39.89102 -38.51771 -35.52726 -34.08620 -32.30615 -31.65613 -29.46270 -27.76752 -27.27549 -25.80719 -24.19868 -22.38732 -21.32620 -19.62488 -19.37430 -17.39248 -16.30811 -15.71371 -15.47764 -15.32938 -15.02899 -14.64702 -14.51425 -14.11963 -13.62899 -13.46595 -13.06829 -13.00466 -12.52358 -12.26774 -12.15082 -11.92087 -11.69776 -11.63846 -11.30805 -11.25306 -11.09938 -10.94789 -10.85121 -10.73398 -10.29281 -9.36865 -8.98018 -8.70644 -8.59250 -8.25741 -7.81585 -6.14134 -4.20997 3.25461 3.31514 3.34066 3.44947 3.80931 3.89827 4.32429 4.33498 4.53415 4.55640 4.90523 5.00053 5.08879 5.20240 5.21431 5.21765 5.31920 5.37516 5.45904 5.51581 5.53898 5.63115 5.66786 5.69117 5.77187 5.86250 5.94761 6.06307 6.64089 6.86532 7.06581 7.36487 7.47186 7.50822 7.56425 7.70860 8.00409 8.68243 8.82345 9.17511 9.45811 10.96127 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.038801 B = 0.003625 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.460842 B = 7722.990316 C = 7859.343135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.504 5.504 3 C 0.035 3.965 4 C -0.115 4.115 5 C 0.109 3.891 6 C -0.182 4.182 7 N -0.648 5.648 8 C 0.035 3.965 9 C 0.497 3.503 10 O -0.543 6.543 11 N -0.716 5.716 12 C 0.251 3.749 13 C -0.543 4.543 14 H 0.062 0.938 15 C 0.063 3.937 16 N -0.885 5.885 17 Si 0.904 3.096 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.042 3.958 22 H 0.024 0.976 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.039 0.961 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.351 0.649 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.389 0.611 36 H 0.025 0.975 37 H 0.027 0.973 38 H 0.266 0.734 39 H 0.044 0.956 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.459 17.133 -5.528 22.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.228 5.228 3 C -0.093 4.093 4 C -0.153 4.153 5 C 0.017 3.983 6 C -0.241 4.241 7 N -0.280 5.280 8 C -0.098 4.098 9 C 0.281 3.719 10 O -0.421 6.421 11 N -0.365 5.365 12 C 0.130 3.870 13 C -0.581 4.581 14 H 0.081 0.919 15 C -0.141 4.141 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.086 4.086 22 H 0.043 0.957 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.099 0.901 26 H 0.058 0.942 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.171 0.829 33 H 0.114 0.886 34 H 0.073 0.927 35 H 0.221 0.779 36 H 0.043 0.957 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.108 16.714 -3.723 21.565 hybrid contribution -0.081 -0.404 -2.425 2.460 sum -13.188 16.310 -6.148 21.857 Atomic orbital electron populations 1.22527 0.88320 1.02279 1.00474 1.65350 1.07551 1.14919 1.34950 1.23077 0.94949 0.90192 1.01048 1.22423 0.97324 0.95549 1.00020 1.21660 0.92754 0.92140 0.91768 1.22601 1.02049 1.02146 0.97320 1.60287 1.11882 1.02908 1.52967 1.21938 1.00384 0.91591 0.95870 1.20345 0.83821 0.83135 0.84584 1.90664 1.47714 1.76975 1.26706 1.46436 1.43063 1.14109 1.32868 1.19080 0.87389 0.86294 0.94251 1.21234 1.23815 0.98243 1.14834 0.91943 1.24956 0.94987 0.98981 0.95127 1.69975 1.23832 1.32950 1.25520 0.86418 0.78421 0.82510 0.79570 1.20507 1.21001 1.19755 1.23284 0.93489 1.01194 0.90625 0.95729 0.91177 0.91328 0.90062 0.94247 0.89576 0.91191 0.92075 0.92142 0.91892 0.82880 0.88569 0.92722 0.77887 0.95655 0.95526 0.92460 0.93741 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.53 60.06 0.57 0.69 16 2 N -0.50 -5.76 5.66 -238.23 -1.35 -7.10 16 3 C 0.04 0.34 6.49 -2.18 -0.01 0.33 16 4 C -0.11 -1.13 6.40 -25.35 -0.16 -1.29 16 5 C 0.11 1.18 0.93 -130.21 -0.12 1.06 16 6 C -0.18 -1.64 8.04 37.16 0.30 -1.34 16 7 N -0.65 -9.14 5.65 -99.82 -0.56 -9.70 16 8 C 0.03 0.50 5.52 -4.98 -0.03 0.47 16 9 C 0.50 10.07 7.87 -10.99 -0.09 9.98 16 10 O -0.54 -13.38 16.20 5.56 0.09 -13.29 16 11 N -0.72 -15.22 5.55 -61.47 -0.34 -15.56 16 12 C 0.25 6.75 5.43 -5.19 -0.03 6.72 16 13 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16 14 H 0.06 1.59 7.60 -52.49 -0.40 1.20 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 17 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 C 0.04 0.46 5.55 -2.18 -0.01 0.45 16 22 H 0.02 0.19 7.97 -51.93 -0.41 -0.22 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.04 0.33 7.97 -51.93 -0.41 -0.09 16 27 H 0.09 0.96 7.95 -51.93 -0.41 0.54 16 28 H 0.07 0.56 7.71 -51.93 -0.40 0.16 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 31 H 0.06 0.57 6.36 -51.93 -0.33 0.24 16 32 H 0.35 5.11 8.47 -39.29 -0.33 4.77 16 33 H 0.10 1.28 6.14 -51.93 -0.32 0.96 16 34 H 0.05 0.67 6.31 -51.93 -0.33 0.35 16 35 H 0.39 7.03 8.32 -40.82 -0.34 6.69 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.03 0.80 8.14 -51.92 -0.42 0.38 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.04 0.42 7.59 -51.93 -0.39 0.03 16 40 H 0.09 1.07 5.93 -51.93 -0.31 0.76 16 LS Contribution 321.26 15.07 4.84 4.84 Total: -1.00 -32.75 321.26 -8.09 -40.83 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -6.48 Total: 6.12 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 0.00 Total: 3.55 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -1.52 Total: -58.00 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.09 Total: -13.29 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.75 -8.09 -40.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716595334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.813 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.82 seconds