Wall clock time and date at job start Mon Mar 30 2020 05:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.48561 * 111.00239 * 2 1 4 4 C 1.54382 * 104.59608 * 200.95711 * 3 2 1 5 5 C 1.54259 * 105.06032 * 23.85756 * 4 3 2 6 6 C 1.52997 * 110.32840 * 118.89325 * 5 4 3 7 7 N 1.46903 * 110.32242 * 241.00112 * 5 4 3 8 8 C 1.46896 * 111.00404 * 178.57196 * 7 5 4 9 9 C 1.50695 * 109.47607 * 179.97438 * 8 7 5 10 10 O 1.21283 * 119.99636 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00343 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00302 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47307 * 179.97438 * 12 11 9 14 14 H 1.07999 * 120.00165 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00176 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99946 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00292 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47046 * 90.00477 * 17 15 13 19 19 H 1.48495 * 109.47287 * 210.00451 * 17 15 13 20 20 H 1.48498 * 109.47237 * 330.00547 * 17 15 13 21 21 C 1.48558 * 111.00083 * 244.58059 * 2 1 3 22 22 H 1.09000 * 109.47024 * 60.12735 * 1 2 3 23 23 H 1.08998 * 109.47244 * 180.12433 * 1 2 3 24 24 H 1.08997 * 109.47124 * 300.12404 * 1 2 3 25 25 H 1.08998 * 110.40848 * 82.17987 * 3 2 1 26 26 H 1.08998 * 110.41135 * 319.73789 * 3 2 1 27 27 H 1.08993 * 110.32340 * 264.95598 * 4 3 2 28 28 H 1.08999 * 110.40831 * 142.78843 * 4 3 2 29 29 H 1.09002 * 109.47153 * 59.99730 * 6 5 4 30 30 H 1.09001 * 109.46832 * 299.99921 * 6 5 4 31 31 H 1.09004 * 109.47261 * 179.97438 * 6 5 4 32 32 H 1.00896 * 110.99624 * 302.52347 * 7 5 4 33 33 H 1.09006 * 109.46794 * 300.00301 * 8 7 5 34 34 H 1.09000 * 109.46847 * 59.99364 * 8 7 5 35 35 H 0.97008 * 119.99978 * 0.02562 * 11 9 8 36 36 H 1.08996 * 109.47191 * 300.00432 * 12 11 9 37 37 H 1.09011 * 109.46772 * 60.00412 * 12 11 9 38 38 H 0.96995 * 120.00399 * 179.97438 * 16 15 13 39 39 H 1.09000 * 110.41322 * 40.26590 * 21 2 1 40 40 H 1.09004 * 110.41245 * 277.81947 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2501 -0.5344 5 6 3.4433 -0.0539 -1.3585 6 6 3.7948 0.2400 -2.8183 7 7 4.3952 -1.0172 -0.7894 8 6 4.3827 -2.2779 -1.5432 9 6 5.3696 -3.2387 -0.9319 10 8 6.0192 -2.9061 0.0368 11 7 5.5297 -4.4679 -1.4609 12 6 6.4896 -5.4017 -0.8669 13 6 6.4757 -6.6955 -1.6394 14 1 5.8180 -6.8106 -2.4883 15 6 7.3035 -7.7320 -1.2633 16 7 8.1048 -7.5918 -0.2300 17 14 7.2868 -9.3355 -2.2213 18 1 8.2844 -9.2666 -3.3192 19 1 7.6280 -10.4589 -1.3121 20 1 5.9346 -9.5557 -2.7943 21 6 2.0013 -0.5953 -1.2526 22 1 -0.3633 0.5119 -0.8911 23 1 -0.3633 -1.0276 0.0022 24 1 -0.3633 0.5157 0.8888 25 1 2.0078 1.7916 1.0121 26 1 1.4099 2.0212 -0.6602 27 1 4.1482 1.1748 0.2935 28 1 3.6954 2.0992 -1.1695 29 1 4.7848 0.6930 -2.8695 30 1 3.0591 0.9260 -3.2381 31 1 3.7912 -0.6899 -3.3872 32 1 5.3251 -0.6275 -0.7520 33 1 3.3833 -2.7120 -1.5086 34 1 4.6589 -2.0842 -2.5797 35 1 5.0099 -4.7340 -2.2354 36 1 7.4887 -4.9674 -0.9026 37 1 6.2143 -5.5951 0.1700 38 1 8.6869 -8.3210 0.0350 39 1 1.4099 -0.2712 -2.1089 40 1 2.0078 -1.6832 -1.1838 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716595334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:05 Heat of formation + Delta-G solvation = -55.504156 kcal Electronic energy + Delta-G solvation = -19100.860522 eV Core-core repulsion = 16142.268893 eV Total energy + Delta-G solvation = -2958.591629 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 6.36 seconds Orbital eigenvalues (eV) -40.93154 -40.01341 -36.56607 -36.01028 -34.33216 -32.64038 -30.33273 -29.56493 -28.01163 -27.20885 -25.15043 -24.24082 -22.22992 -21.27944 -20.27090 -19.03736 -17.82673 -17.13967 -16.91692 -16.43097 -16.31584 -16.17890 -15.53403 -15.28384 -14.90222 -14.74866 -14.22223 -13.95428 -13.85205 -13.79242 -13.59990 -12.99671 -12.92962 -12.81786 -12.68086 -12.48310 -12.24634 -12.22017 -12.06561 -11.85562 -11.53305 -11.47765 -10.79597 -10.70618 -9.81186 -9.36311 -9.25900 -8.28378 -6.45265 1.43502 1.46222 1.57498 1.80796 2.30059 2.50876 3.06375 3.14119 3.30557 3.53786 3.77567 3.99416 4.13783 4.29446 4.32354 4.35906 4.42773 4.51983 4.54116 4.67460 4.76936 4.80611 4.88140 4.96450 5.02287 5.08372 5.12534 5.21680 5.25093 5.28094 5.49954 5.70245 5.85613 5.87411 6.10372 6.16880 6.42043 6.66181 6.95974 7.24394 7.53969 8.83987 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.038801 B = 0.003625 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.460842 B = 7722.990316 C = 7859.343135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.536 5.536 3 C 0.037 3.963 4 C -0.114 4.114 5 C 0.108 3.892 6 C -0.176 4.176 7 N -0.669 5.669 8 C 0.054 3.946 9 C 0.493 3.507 10 O -0.592 6.592 11 N -0.709 5.709 12 C 0.267 3.733 13 C -0.556 4.556 14 H 0.085 0.915 15 C 0.002 3.998 16 N -0.932 5.932 17 Si 0.986 3.014 18 H -0.270 1.270 19 H -0.285 1.285 20 H -0.255 1.255 21 C 0.043 3.957 22 H 0.038 0.962 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.345 0.655 33 H 0.115 0.885 34 H 0.087 0.913 35 H 0.408 0.592 36 H -0.013 1.013 37 H -0.016 1.016 38 H 0.269 0.731 39 H 0.064 0.936 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.283 17.476 -8.051 24.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.260 5.260 3 C -0.090 4.090 4 C -0.152 4.152 5 C 0.017 3.983 6 C -0.235 4.235 7 N -0.302 5.302 8 C -0.078 4.078 9 C 0.280 3.720 10 O -0.473 6.473 11 N -0.360 5.360 12 C 0.144 3.856 13 C -0.594 4.594 14 H 0.103 0.897 15 C -0.197 4.197 16 N -0.571 5.571 17 Si 0.809 3.191 18 H -0.195 1.195 19 H -0.210 1.210 20 H -0.178 1.178 21 C -0.086 4.086 22 H 0.057 0.943 23 H 0.085 0.915 24 H 0.092 0.908 25 H 0.097 0.903 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.110 0.890 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.164 0.836 33 H 0.132 0.868 34 H 0.104 0.896 35 H 0.244 0.756 36 H 0.005 0.995 37 H 0.002 0.998 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.985 17.087 -6.287 23.581 hybrid contribution 0.471 -0.425 -1.562 1.686 sum -14.514 16.662 -7.849 23.450 Atomic orbital electron populations 1.22531 0.87153 1.02363 1.01399 1.65312 1.08959 1.16087 1.35595 1.23089 0.94823 0.89712 1.01421 1.22440 0.97184 0.95918 0.99681 1.21772 0.91870 0.91607 0.93057 1.22539 1.02672 1.02696 0.95630 1.60281 1.12215 1.03512 1.54185 1.21810 0.98956 0.90377 0.96648 1.21442 0.83773 0.83134 0.83663 1.90639 1.49813 1.77819 1.29036 1.46171 1.42409 1.13974 1.33440 1.18515 0.86732 0.87682 0.92680 1.21630 1.24215 0.98201 1.15325 0.89720 1.26094 0.94226 1.03367 0.96029 1.70143 1.24864 1.34460 1.27584 0.85138 0.79346 0.76775 0.77836 1.19525 1.21026 1.17848 1.23278 0.93686 1.00328 0.91266 0.94313 0.91549 0.90845 0.90309 0.92383 0.91509 0.89006 0.91966 0.90322 0.91729 0.83551 0.86764 0.89585 0.75643 0.99518 0.99812 0.92262 0.91791 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.53 127.69 1.22 1.44 16 2 N -0.54 -11.35 5.66 -907.63 -5.14 -16.49 16 3 C 0.04 0.65 6.49 86.45 0.56 1.21 16 4 C -0.11 -2.05 6.40 31.49 0.20 -1.85 16 5 C 0.11 2.13 0.93 4.42 0.00 2.13 16 6 C -0.18 -2.61 8.04 71.98 0.58 -2.03 16 7 N -0.67 -18.36 5.65 -469.71 -2.65 -21.02 16 8 C 0.05 1.48 5.52 85.56 0.47 1.95 16 9 C 0.49 20.19 7.87 87.66 0.69 20.88 16 10 O -0.59 -30.42 16.20 -3.04 -0.05 -30.47 16 11 N -0.71 -30.44 5.55 -466.79 -2.59 -33.03 16 12 C 0.27 14.97 5.43 85.63 0.46 15.44 16 13 C -0.56 -30.58 9.28 25.60 0.24 -30.34 16 14 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 15 C 0.00 0.13 5.46 84.66 0.46 0.59 16 16 N -0.93 -57.00 13.29 21.45 0.28 -56.71 16 17 Si 0.99 42.55 29.54 68.60 2.03 44.58 16 18 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 19 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 21 C 0.04 0.83 5.55 86.45 0.48 1.31 16 22 H 0.04 0.51 7.97 -2.39 -0.02 0.49 16 23 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.06 0.79 7.97 -2.39 -0.02 0.77 16 27 H 0.07 1.46 7.95 -2.39 -0.02 1.44 16 28 H 0.09 1.23 7.71 -2.39 -0.02 1.21 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 0.91 8.10 -2.39 -0.02 0.89 16 31 H 0.06 0.94 6.36 -2.38 -0.02 0.92 16 32 H 0.35 10.04 8.47 -89.70 -0.76 9.28 16 33 H 0.11 2.79 6.14 -2.38 -0.01 2.77 16 34 H 0.09 1.87 6.31 -2.39 -0.02 1.85 16 35 H 0.41 14.25 8.32 -92.70 -0.77 13.48 16 36 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 37 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 38 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 39 H 0.06 0.99 7.59 -2.39 -0.02 0.98 16 40 H 0.07 1.65 5.93 -2.39 -0.01 1.63 16 Total: -1.00 -73.72 321.26 -3.24 -76.97 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: -0.49 Total: 25.44 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 5.37 Total: 10.73 kcal Atomic # 7 Polarization: -117.15 SS G_CDS: -10.10 Total: -127.25 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.05 Total: -30.47 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -73.72 -3.24 -76.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716595334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.462 kcal (2) G-P(sol) polarization free energy of solvation -73.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.36 seconds