Wall clock time and date at job start Mon Mar 30 2020 03:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 109.47054 * 2 1 4 4 C 1.46498 * 120.00052 * 269.99573 * 3 2 1 5 5 C 1.50699 * 109.47409 * 269.99927 * 4 3 2 6 6 H 1.08001 * 119.99947 * 0.02562 * 5 4 3 7 7 C 1.37868 * 120.00083 * 179.97438 * 5 4 3 8 8 N 1.31520 * 120.00236 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00260 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46921 * 60.00099 * 9 7 5 11 11 H 1.48499 * 109.47093 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46920 * 300.00353 * 9 7 5 13 13 C 1.34787 * 119.99833 * 90.00218 * 3 2 1 14 14 O 1.21274 * 119.99562 * 180.02562 * 13 3 2 15 15 C 1.50699 * 119.99781 * 359.97438 * 13 3 2 16 16 C 1.53001 * 109.46674 * 180.02562 * 15 13 3 17 17 O 1.42899 * 109.46892 * 180.02562 * 16 15 13 18 18 C 1.42902 * 113.99903 * 180.02562 * 17 16 15 19 19 C 1.53786 * 113.61284 * 209.99760 * 18 17 16 20 20 C 1.53781 * 87.17350 * 220.06071 * 19 18 17 21 21 C 1.53782 * 87.08260 * 25.39213 * 20 19 18 22 22 H 1.09001 * 109.47276 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47096 * 299.99672 * 1 2 3 24 24 H 1.09002 * 109.47022 * 60.00140 * 1 2 3 25 25 H 1.09005 * 109.47056 * 239.99831 * 2 1 3 26 26 H 1.09007 * 109.46964 * 120.00324 * 2 1 3 27 27 H 1.08997 * 109.47098 * 30.00780 * 4 3 2 28 28 H 1.09004 * 109.46865 * 149.99998 * 4 3 2 29 29 H 0.96994 * 120.00422 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.47123 * 60.00061 * 15 13 3 31 31 H 1.08997 * 109.47313 * 300.00071 * 15 13 3 32 32 H 1.08998 * 109.46970 * 60.00664 * 16 15 13 33 33 H 1.08997 * 109.47169 * 299.99988 * 16 15 13 34 34 H 1.08993 * 112.90736 * 341.24804 * 18 17 16 35 35 H 1.09002 * 113.61357 * 105.46987 * 19 18 17 36 36 H 1.09002 * 113.61608 * 334.65149 * 19 18 17 37 37 H 1.09001 * 113.61695 * 139.93969 * 20 19 18 38 38 H 1.08997 * 113.61223 * 270.84552 * 20 19 18 39 39 H 1.08997 * 113.61668 * 89.11298 * 21 20 19 40 40 H 1.08998 * 113.61674 * 219.93807 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1492 2.3896 -2.8778 8 7 3.3492 3.1257 -3.6180 9 14 5.9133 2.0956 -3.4174 10 1 6.1404 0.6388 -3.5946 11 1 6.1608 2.7957 -4.7034 12 1 6.8411 2.6189 -2.3827 13 6 2.2430 2.0165 1.1673 14 8 2.6468 3.1601 1.1673 15 6 1.9913 1.3062 2.4723 16 6 2.3223 2.2438 3.6353 17 8 2.0842 1.5701 4.8728 18 6 2.3632 2.3623 6.0289 19 6 2.8192 1.5385 7.2448 20 6 1.9544 2.4734 8.1067 21 6 1.1101 2.7256 6.8463 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.5818 1.6877 -2.0283 28 1 2.0956 3.1410 -1.1383 29 1 3.6752 3.5162 -4.4439 30 1 2.6212 0.4185 2.5302 31 1 0.9433 1.0124 2.5299 32 1 1.6920 3.1312 3.5772 33 1 3.3702 2.5379 3.5779 34 1 3.0065 3.2154 5.8134 35 1 3.8867 1.6180 7.4506 36 1 2.4666 0.5072 7.2306 37 1 1.4120 1.9588 8.8998 38 1 2.4857 3.3570 8.4603 39 1 0.2894 2.0191 6.7220 40 1 0.7966 3.7631 6.7311 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716943161.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:55 Heat of formation + Delta-G solvation = -73.432516 kcal Electronic energy + Delta-G solvation = -19013.882746 eV Core-core repulsion = 16022.220934 eV Total energy + Delta-G solvation = -2991.661812 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.46030 -38.93662 -36.14164 -35.25579 -32.84879 -31.10089 -30.02762 -27.14850 -25.80852 -24.96839 -23.73227 -22.97421 -21.81367 -19.81317 -18.22038 -17.30732 -16.44476 -15.97916 -15.80306 -15.73874 -15.17584 -14.36855 -14.29252 -14.16355 -13.35116 -13.09696 -12.79776 -12.60466 -12.56608 -12.15771 -11.98027 -11.72464 -11.48646 -11.37543 -11.21793 -10.93292 -10.90834 -10.76519 -10.61261 -10.54173 -10.46555 -10.12025 -9.64148 -9.36899 -8.91452 -8.42273 -7.65689 -6.03279 -4.08127 3.32507 3.36736 3.37633 3.45000 3.50553 4.16441 4.43304 4.45628 4.49817 4.70859 4.74733 5.07540 5.24689 5.26254 5.30122 5.34476 5.40065 5.52406 5.60334 5.65224 5.67487 5.72011 5.76602 5.82040 5.95476 5.99868 6.06195 6.13489 6.18000 6.26279 6.52445 7.08114 7.30983 7.45637 7.56106 7.93145 8.24812 8.43146 8.90593 9.09323 9.56925 11.04789 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.027461 B = 0.004136 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.389039 B = 6767.977537 C = 7317.477495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.596 5.596 4 C 0.246 3.754 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.509 3.491 14 O -0.546 6.546 15 C -0.139 4.139 16 C 0.078 3.922 17 O -0.379 6.379 18 C 0.063 3.937 19 C -0.138 4.138 20 C -0.142 4.142 21 C -0.158 4.158 22 H 0.059 0.941 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.032 0.968 28 H 0.043 0.957 29 H 0.264 0.736 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.100 -5.502 17.774 19.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.328 5.328 4 C 0.127 3.873 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.295 3.705 14 O -0.424 6.424 15 C -0.179 4.179 16 C 0.001 3.999 17 O -0.298 6.298 18 C 0.005 3.995 19 C -0.176 4.176 20 C -0.180 4.180 21 C -0.195 4.195 22 H 0.078 0.922 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.100 0.900 26 H 0.085 0.915 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.962 -4.977 17.564 18.918 hybrid contribution 1.023 0.030 -0.496 1.138 sum -3.938 -4.947 17.068 18.201 Atomic orbital electron populations 1.22218 0.96787 1.01435 1.02300 1.21435 0.93535 0.84133 1.02769 1.48244 1.63530 1.13319 1.07670 1.19264 0.96235 0.93640 0.78141 1.21411 0.96963 1.31938 1.06272 0.92514 1.24936 0.97864 0.94929 0.96380 1.69924 1.35730 1.33425 1.14369 0.86556 0.84787 0.78255 0.77807 1.20234 1.21176 1.20195 1.20099 0.78517 0.86822 0.85041 1.90668 1.46170 1.18196 1.87375 1.21556 1.03997 1.00010 0.92318 1.22212 1.00724 0.94607 0.82370 1.87855 1.87917 1.40559 1.13496 1.23719 0.96630 0.94466 0.84683 1.23214 1.00073 0.99824 0.94453 1.22651 0.98753 0.99933 0.96640 1.23513 0.98198 1.02036 0.95792 0.92154 0.93001 0.92103 0.89974 0.91540 0.94994 0.93918 0.92671 0.88789 0.88895 0.92558 0.92426 0.89499 0.91146 0.89243 0.90912 0.90083 0.89326 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.24 37.16 0.38 -1.93 16 2 C 0.11 1.71 5.93 -4.04 -0.02 1.69 16 3 N -0.60 -12.73 2.46 -175.06 -0.43 -13.16 16 4 C 0.25 6.50 5.16 -5.20 -0.03 6.47 16 5 C -0.53 -15.09 9.39 -34.44 -0.32 -15.41 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 9 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.51 10.70 7.67 -10.98 -0.08 10.62 16 14 O -0.55 -13.82 15.56 5.56 0.09 -13.73 16 15 C -0.14 -2.17 4.62 -27.88 -0.13 -2.30 16 16 C 0.08 1.19 5.07 37.16 0.19 1.37 16 17 O -0.38 -5.27 10.36 -35.23 -0.36 -5.64 16 18 C 0.06 0.71 4.32 -25.82 -0.11 0.60 16 19 C -0.14 -1.29 7.91 -25.92 -0.20 -1.49 16 20 C -0.14 -1.14 8.08 -25.92 -0.21 -1.35 16 21 C -0.16 -1.52 7.92 -25.82 -0.20 -1.72 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.68 7.22 -51.93 -0.37 0.30 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 26 H 0.07 0.91 6.44 -51.92 -0.33 0.58 16 27 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 28 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.09 1.35 7.40 -51.93 -0.38 0.96 16 31 H 0.09 1.28 7.18 -51.93 -0.37 0.91 16 32 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 33 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 34 H 0.09 0.95 7.87 -51.93 -0.41 0.54 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 331.42 15.07 4.99 4.99 Total: -1.00 -32.65 331.42 -7.71 -40.36 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -6.87 Total: -1.96 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -0.85 Total: -1.79 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.31 Total: -39.23 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.28 Total: -19.36 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.65 -7.71 -40.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716943161.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.068 kcal (2) G-P(sol) polarization free energy of solvation -32.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds