Wall clock time and date at job start Mon Mar 30 2020 03:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46508 * 109.46700 * 2 1 4 4 C 1.46496 * 119.99727 * 91.21211 * 3 2 1 5 5 C 1.50701 * 109.47293 * 95.06105 * 4 3 2 6 6 H 1.07997 * 120.00328 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99985 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99796 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00036 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46847 * 270.00176 * 9 7 5 11 11 H 1.48504 * 109.47067 * 29.99815 * 9 7 5 12 12 H 1.48496 * 109.47314 * 149.99858 * 9 7 5 13 13 C 1.34770 * 120.00049 * 271.20425 * 3 2 1 14 14 O 1.21284 * 120.00342 * 5.25518 * 13 3 2 15 15 C 1.50701 * 120.00181 * 185.24524 * 13 3 2 16 16 H 1.09004 * 109.47009 * 40.36385 * 15 13 3 17 17 C 1.52997 * 109.47404 * 280.36618 * 15 13 3 18 18 C 1.53007 * 109.47296 * 160.36320 * 15 13 3 19 19 H 1.08999 * 109.86770 * 59.29900 * 18 15 13 20 20 C 1.54093 * 109.87904 * 180.30943 * 18 15 13 21 21 C 1.54814 * 104.18724 * 121.45432 * 20 18 15 22 22 C 1.54990 * 102.09309 * 20.87966 * 21 20 18 23 23 O 1.43748 * 109.87404 * 298.29504 * 18 15 13 24 24 H 1.08993 * 109.47276 * 59.99930 * 1 2 3 25 25 H 1.08995 * 109.46917 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46966 * 299.99747 * 1 2 3 27 27 H 1.08996 * 109.47349 * 240.00564 * 2 1 3 28 28 H 1.08993 * 109.47582 * 119.99617 * 2 1 3 29 29 H 1.08996 * 109.47357 * 335.06071 * 4 3 2 30 30 H 1.08998 * 109.46891 * 215.05904 * 4 3 2 31 31 H 0.96997 * 119.99535 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.46837 * 292.11230 * 17 15 13 33 33 H 1.09000 * 109.47245 * 52.10972 * 17 15 13 34 34 H 1.08998 * 109.47234 * 172.11382 * 17 15 13 35 35 H 1.08997 * 110.48722 * 240.13076 * 20 18 15 36 36 H 1.09003 * 110.48885 * 2.64647 * 20 18 15 37 37 H 1.09000 * 110.90863 * 139.07729 * 21 20 18 38 38 H 1.09004 * 110.90493 * 262.64871 * 21 20 18 39 39 H 1.08993 * 110.61984 * 81.47565 * 22 21 20 40 40 H 1.09003 * 110.61811 * 204.31925 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2876 2.0629 1.2684 5 6 3.7490 1.9279 1.6108 6 1 4.4109 1.3880 0.9500 7 6 4.2411 2.4937 2.7679 8 7 3.4351 3.1508 3.5730 9 14 6.0527 2.3270 3.1920 10 1 6.2610 1.0980 3.9992 11 1 6.8478 2.2381 1.9409 12 1 6.4894 3.5121 3.9729 13 6 2.2197 2.0248 -1.1669 14 8 1.9075 1.4962 -2.2128 15 6 2.8328 3.4015 -1.1721 16 1 3.6359 3.4444 -0.4365 17 6 1.7633 4.4375 -0.8204 18 6 3.3975 3.7031 -2.5619 19 1 2.6016 3.6497 -3.3047 20 6 4.0339 5.1064 -2.5756 21 6 5.5048 4.8519 -2.9862 22 6 5.4148 3.4659 -3.6740 23 8 4.4316 2.7583 -2.8847 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5137 0.8899 29 1 1.6864 1.6122 2.0580 30 1 2.0324 3.1185 1.1750 31 1 3.7814 3.5491 4.3868 32 1 1.0323 4.4932 -1.6271 33 1 1.2636 4.1448 0.1030 34 1 2.2319 5.4125 -0.6867 35 1 3.5380 5.7430 -3.3083 36 1 3.9849 5.5573 -1.5845 37 1 5.8502 5.6121 -3.6868 38 1 6.1516 4.8105 -2.1098 39 1 5.0743 3.5700 -4.7041 40 1 6.3779 2.9567 -3.6389 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720609324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:57 Heat of formation + Delta-G solvation = -95.745383 kcal Electronic energy + Delta-G solvation = -20443.027869 eV Core-core repulsion = 17450.398499 eV Total energy + Delta-G solvation = -2992.629371 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.75928 -38.36112 -35.04336 -33.64819 -32.64336 -31.61824 -30.16628 -27.57138 -26.92750 -24.39971 -22.99535 -22.67393 -21.66985 -20.05302 -18.14784 -16.82360 -16.29883 -15.94649 -15.47952 -15.07952 -14.87425 -14.33133 -13.94486 -13.42146 -13.29785 -13.09926 -12.67075 -12.32156 -12.18328 -11.86790 -11.59419 -11.47565 -11.34991 -11.27293 -11.07998 -10.89866 -10.82367 -10.74364 -10.56070 -10.39794 -10.31173 -10.00389 -9.65066 -9.22498 -8.76368 -8.49296 -7.58623 -6.15012 -4.21251 3.24314 3.31389 3.36153 3.59737 4.06572 4.19636 4.37126 4.78819 4.99628 5.14694 5.16741 5.31548 5.40860 5.50469 5.69661 5.72895 5.75718 5.89647 5.90927 5.92146 5.95937 6.00701 6.11309 6.12286 6.21227 6.33078 6.35882 6.48241 6.55209 6.71584 6.77267 6.90523 7.27269 7.34301 7.66804 7.82171 8.12147 8.47314 8.86914 9.19994 9.46509 10.91245 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.013994 B = 0.009672 C = 0.006822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.359041 B = 2894.110567 C = 4103.679085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.116 3.884 3 N -0.599 5.599 4 C 0.232 3.768 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.065 3.935 8 N -0.892 5.892 9 Si 0.893 3.107 10 H -0.280 1.280 11 H -0.272 1.272 12 H -0.285 1.285 13 C 0.529 3.471 14 O -0.571 6.571 15 C -0.112 4.112 16 H 0.121 0.879 17 C -0.139 4.139 18 C 0.099 3.901 19 H 0.070 0.930 20 C -0.153 4.153 21 C -0.155 4.155 22 C 0.044 3.956 23 O -0.359 6.359 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.034 0.966 30 H 0.044 0.956 31 H 0.264 0.736 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.248 3.661 -8.688 9.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.007 4.007 3 N -0.329 5.329 4 C 0.112 3.888 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.138 4.138 8 N -0.531 5.531 9 Si 0.721 3.279 10 H -0.206 1.206 11 H -0.197 1.197 12 H -0.211 1.211 13 C 0.318 3.682 14 O -0.451 6.451 15 C -0.133 4.133 16 H 0.139 0.861 17 C -0.196 4.196 18 C 0.041 3.959 19 H 0.087 0.913 20 C -0.190 4.190 21 C -0.193 4.193 22 C -0.033 4.033 23 O -0.278 6.278 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.422 3.257 -8.958 9.541 hybrid contribution 1.087 0.160 0.495 1.205 sum 0.664 3.416 -8.463 9.151 Atomic orbital electron populations 1.22106 0.97089 1.01032 1.01856 1.21201 0.93299 0.84113 1.02106 1.48212 1.63628 1.13214 1.07875 1.19546 0.96448 0.93321 0.79490 1.21553 0.94132 1.34913 1.06649 0.92024 1.24931 0.98014 0.94907 0.95935 1.69924 1.35097 1.35303 1.12758 0.86560 0.85085 0.77670 0.78608 1.20570 1.19670 1.21125 1.20222 0.77461 0.87410 0.83127 1.90564 1.53385 1.69092 1.32099 1.21465 1.00402 0.93432 0.97998 0.86145 1.21770 0.97783 0.97912 1.02164 1.22528 0.90541 0.87049 0.95764 0.91260 1.23057 0.95403 0.97551 1.03011 1.23126 0.97268 0.97674 1.01237 1.23513 0.93239 0.91927 0.94619 1.89063 1.33654 1.33677 1.71398 0.92762 0.92645 0.92746 0.91425 0.90781 0.94758 0.93853 0.92627 0.92941 0.90702 0.91757 0.90961 0.89757 0.90723 0.90351 0.92769 0.89493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 10.23 37.16 0.38 -2.36 16 2 C 0.12 2.29 6.05 -4.04 -0.02 2.27 16 3 N -0.60 -13.27 2.47 -175.06 -0.43 -13.70 16 4 C 0.23 5.57 4.81 -5.20 -0.03 5.54 16 5 C -0.53 -14.04 8.18 -34.44 -0.28 -14.32 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -24.42 13.29 55.43 0.74 -23.69 16 9 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 12 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.53 11.80 6.53 -10.99 -0.07 11.73 16 14 O -0.57 -13.78 15.52 3.37 0.05 -13.73 16 15 C -0.11 -2.18 1.58 -91.77 -0.14 -2.33 16 16 H 0.12 2.64 6.53 -51.93 -0.34 2.30 16 17 C -0.14 -2.30 8.47 37.16 0.31 -1.99 16 18 C 0.10 1.75 2.49 -26.16 -0.07 1.68 16 19 H 0.07 1.24 7.89 -51.93 -0.41 0.83 16 20 C -0.15 -2.08 6.12 -25.20 -0.15 -2.24 16 21 C -0.16 -1.96 7.16 -24.72 -0.18 -2.14 16 22 C 0.04 0.63 7.72 38.21 0.29 0.92 16 23 O -0.36 -7.01 10.73 -37.42 -0.40 -7.41 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.07 1.36 7.54 -51.93 -0.39 0.97 16 28 H 0.07 1.42 8.06 -51.93 -0.42 1.00 16 29 H 0.03 0.87 8.03 -51.93 -0.42 0.45 16 30 H 0.04 1.05 4.83 -51.93 -0.25 0.80 16 31 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 33 H 0.07 1.34 5.92 -51.93 -0.31 1.03 16 34 H 0.06 0.92 6.81 -51.93 -0.35 0.57 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.08 1.15 6.51 -51.93 -0.34 0.81 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 319.16 15.07 4.81 4.81 Total: -1.00 -30.22 319.16 -6.88 -37.10 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.57 Total: 2.53 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -0.05 Total: -1.61 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.30 Total: -37.39 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.35 Total: -21.14 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.22 -6.88 -37.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720609324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.642 kcal (2) G-P(sol) polarization free energy of solvation -30.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds