Wall clock time and date at job start Mon Mar 30 2020 03:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46508 * 109.46700 * 2 1 4 4 C 1.46496 * 119.99727 * 91.21211 * 3 2 1 5 5 C 1.50701 * 109.47293 * 95.06105 * 4 3 2 6 6 H 1.07997 * 120.00328 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99985 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99796 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00036 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46847 * 270.00176 * 9 7 5 11 11 H 1.48504 * 109.47067 * 29.99815 * 9 7 5 12 12 H 1.48496 * 109.47314 * 149.99858 * 9 7 5 13 13 C 1.34770 * 120.00049 * 271.20425 * 3 2 1 14 14 O 1.21284 * 120.00342 * 5.25518 * 13 3 2 15 15 C 1.50701 * 120.00181 * 185.24524 * 13 3 2 16 16 H 1.09004 * 109.47009 * 40.36385 * 15 13 3 17 17 C 1.52997 * 109.47404 * 280.36618 * 15 13 3 18 18 C 1.53007 * 109.47296 * 160.36320 * 15 13 3 19 19 H 1.08999 * 109.86770 * 59.29900 * 18 15 13 20 20 C 1.54093 * 109.87904 * 180.30943 * 18 15 13 21 21 C 1.54814 * 104.18724 * 121.45432 * 20 18 15 22 22 C 1.54990 * 102.09309 * 20.87966 * 21 20 18 23 23 O 1.43748 * 109.87404 * 298.29504 * 18 15 13 24 24 H 1.08993 * 109.47276 * 59.99930 * 1 2 3 25 25 H 1.08995 * 109.46917 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46966 * 299.99747 * 1 2 3 27 27 H 1.08996 * 109.47349 * 240.00564 * 2 1 3 28 28 H 1.08993 * 109.47582 * 119.99617 * 2 1 3 29 29 H 1.08996 * 109.47357 * 335.06071 * 4 3 2 30 30 H 1.08998 * 109.46891 * 215.05904 * 4 3 2 31 31 H 0.96997 * 119.99535 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.46837 * 292.11230 * 17 15 13 33 33 H 1.09000 * 109.47245 * 52.10972 * 17 15 13 34 34 H 1.08998 * 109.47234 * 172.11382 * 17 15 13 35 35 H 1.08997 * 110.48722 * 240.13076 * 20 18 15 36 36 H 1.09003 * 110.48885 * 2.64647 * 20 18 15 37 37 H 1.09000 * 110.90863 * 139.07729 * 21 20 18 38 38 H 1.09004 * 110.90493 * 262.64871 * 21 20 18 39 39 H 1.08993 * 110.61984 * 81.47565 * 22 21 20 40 40 H 1.09003 * 110.61811 * 204.31925 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2876 2.0629 1.2684 5 6 3.7490 1.9279 1.6108 6 1 4.4109 1.3880 0.9500 7 6 4.2411 2.4937 2.7679 8 7 3.4351 3.1508 3.5730 9 14 6.0527 2.3270 3.1920 10 1 6.2610 1.0980 3.9992 11 1 6.8478 2.2381 1.9409 12 1 6.4894 3.5121 3.9729 13 6 2.2197 2.0248 -1.1669 14 8 1.9075 1.4962 -2.2128 15 6 2.8328 3.4015 -1.1721 16 1 3.6359 3.4444 -0.4365 17 6 1.7633 4.4375 -0.8204 18 6 3.3975 3.7031 -2.5619 19 1 2.6016 3.6497 -3.3047 20 6 4.0339 5.1064 -2.5756 21 6 5.5048 4.8519 -2.9862 22 6 5.4148 3.4659 -3.6740 23 8 4.4316 2.7583 -2.8847 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5137 0.8899 29 1 1.6864 1.6122 2.0580 30 1 2.0324 3.1185 1.1750 31 1 3.7814 3.5491 4.3868 32 1 1.0323 4.4932 -1.6271 33 1 1.2636 4.1448 0.1030 34 1 2.2319 5.4125 -0.6867 35 1 3.5380 5.7430 -3.3083 36 1 3.9849 5.5573 -1.5845 37 1 5.8502 5.6121 -3.6868 38 1 6.1516 4.8105 -2.1098 39 1 5.0743 3.5700 -4.7041 40 1 6.3779 2.9567 -3.6389 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720609324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:57 Heat of formation + Delta-G solvation = -113.915629 kcal Electronic energy + Delta-G solvation = -20443.815790 eV Core-core repulsion = 17450.398499 eV Total energy + Delta-G solvation = -2993.417292 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.29470 -39.83136 -36.86221 -35.16091 -34.57760 -32.82357 -31.74614 -28.92530 -28.75940 -25.89025 -24.87069 -24.10845 -22.89480 -21.39177 -19.81493 -18.71791 -18.00392 -17.49897 -16.86584 -16.50223 -16.44814 -16.13544 -15.53358 -14.87069 -14.58187 -14.48615 -14.36910 -14.05278 -13.68041 -13.37929 -13.20568 -12.99869 -12.84496 -12.67961 -12.60362 -12.50342 -12.29989 -12.18968 -12.01662 -11.92551 -11.78804 -11.61437 -11.43840 -10.65010 -10.56960 -10.38981 -9.41948 -8.19026 -6.32324 1.39618 1.42042 1.51918 1.85032 2.34796 2.47465 2.98673 3.09973 3.64634 3.70733 3.92654 4.03961 4.14675 4.20153 4.30174 4.40183 4.44168 4.52914 4.54922 4.68974 4.79135 4.81603 4.82887 4.86812 4.91977 4.96536 5.03940 5.04988 5.14716 5.20194 5.28699 5.33457 5.39350 5.68667 5.91470 6.08583 6.10995 6.60081 6.85194 7.34162 7.47302 8.86016 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.013994 B = 0.009672 C = 0.006822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.359041 B = 2894.110567 C = 4103.679085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.108 3.892 3 N -0.604 5.604 4 C 0.247 3.753 5 C -0.543 4.543 6 H 0.043 0.957 7 C 0.027 3.973 8 N -0.915 5.915 9 Si 0.951 3.049 10 H -0.276 1.276 11 H -0.275 1.275 12 H -0.276 1.276 13 C 0.521 3.479 14 O -0.593 6.593 15 C -0.110 4.110 16 H 0.093 0.907 17 C -0.132 4.132 18 C 0.097 3.903 19 H 0.063 0.937 20 C -0.146 4.146 21 C -0.148 4.148 22 C 0.034 3.966 23 O -0.404 6.404 24 H 0.043 0.957 25 H 0.086 0.914 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.020 0.980 30 H 0.043 0.957 31 H 0.268 0.732 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.306 4.808 -9.206 10.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 N -0.335 5.335 4 C 0.126 3.874 5 C -0.582 4.582 6 H 0.062 0.938 7 C -0.174 4.174 8 N -0.554 5.554 9 Si 0.776 3.224 10 H -0.202 1.202 11 H -0.200 1.200 12 H -0.201 1.201 13 C 0.311 3.689 14 O -0.476 6.476 15 C -0.131 4.131 16 H 0.111 0.889 17 C -0.189 4.189 18 C 0.039 3.961 19 H 0.081 0.919 20 C -0.184 4.184 21 C -0.186 4.186 22 C -0.042 4.042 23 O -0.324 6.324 24 H 0.062 0.938 25 H 0.105 0.895 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.038 0.962 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.102 0.898 37 H 0.128 0.872 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.129 4.400 -9.473 10.446 hybrid contribution 0.914 -0.264 0.626 1.139 sum 1.043 4.137 -8.847 9.822 Atomic orbital electron populations 1.21986 0.94598 1.02939 1.01246 1.21385 0.95389 0.82959 1.01747 1.48296 1.63704 1.14075 1.07377 1.19249 0.95070 0.93274 0.79775 1.21616 0.94943 1.34964 1.06662 0.93827 1.25555 1.01621 0.94513 0.95719 1.69993 1.36626 1.35725 1.13105 0.85666 0.80607 0.77940 0.78158 1.20201 1.19964 1.20086 1.20789 0.77047 0.88454 0.82645 1.90533 1.54526 1.69899 1.32637 1.21487 1.00109 0.92593 0.98891 0.88903 1.21736 0.97324 0.98110 1.01725 1.22580 0.90495 0.89070 0.93920 0.91900 1.23062 0.95974 0.95309 1.04046 1.23122 0.96459 0.97522 1.01482 1.23802 0.92604 0.92664 0.95115 1.89012 1.35053 1.35891 1.72460 0.93828 0.89510 0.92726 0.92210 0.90631 0.96187 0.93938 0.92264 0.91403 0.92440 0.89236 0.88004 0.89787 0.87210 0.91354 0.90996 0.88768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.95 10.23 71.98 0.74 -4.21 16 2 C 0.11 4.31 6.05 86.38 0.52 4.83 16 3 N -0.60 -27.41 2.47 -826.17 -2.04 -29.45 16 4 C 0.25 12.12 4.81 85.63 0.41 12.54 16 5 C -0.54 -29.05 8.18 25.60 0.21 -28.84 16 6 H 0.04 2.45 7.81 -2.91 -0.02 2.43 16 7 C 0.03 1.41 5.46 84.66 0.46 1.87 16 8 N -0.92 -49.98 13.29 21.45 0.28 -49.69 16 9 Si 0.95 42.33 29.54 68.60 2.03 44.36 16 10 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 13 C 0.52 23.70 6.53 87.66 0.57 24.28 16 14 O -0.59 -29.20 15.52 -0.95 -0.01 -29.22 16 15 C -0.11 -4.31 1.58 -11.54 -0.02 -4.33 16 16 H 0.09 4.17 6.53 -2.39 -0.02 4.15 16 17 C -0.13 -4.27 8.47 71.98 0.61 -3.66 16 18 C 0.10 3.36 2.49 30.97 0.08 3.44 16 19 H 0.06 2.22 7.89 -2.39 -0.02 2.20 16 20 C -0.15 -3.65 6.12 31.58 0.19 -3.45 16 21 C -0.15 -3.38 7.16 31.89 0.23 -3.15 16 22 C 0.03 0.93 7.72 72.66 0.56 1.49 16 23 O -0.40 -15.82 10.73 -146.89 -1.58 -17.39 16 24 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.06 2.45 7.54 -2.39 -0.02 2.44 16 28 H 0.08 2.94 8.06 -2.39 -0.02 2.92 16 29 H 0.02 1.03 8.03 -2.39 -0.02 1.01 16 30 H 0.04 2.10 4.83 -2.39 -0.01 2.09 16 31 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 32 H 0.07 1.97 8.13 -2.39 -0.02 1.95 16 33 H 0.06 2.06 5.92 -2.39 -0.01 2.04 16 34 H 0.09 2.42 6.81 -2.39 -0.02 2.40 16 35 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.08 2.10 6.51 -2.39 -0.02 2.08 16 37 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -65.26 319.16 4.25 -61.01 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 1.00 Total: 19.59 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 4.57 Total: 0.79 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -1.76 Total: -79.14 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: -1.59 Total: -46.61 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -65.26 4.25 -61.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720609324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.908 kcal (2) G-P(sol) polarization free energy of solvation -65.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds