Wall clock time and date at job start Mon Mar 30 2020 03:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47042 * 2 1 4 4 C 1.46501 * 120.00301 * 92.37043 * 3 2 1 5 5 C 1.50698 * 109.47207 * 90.12104 * 4 3 2 6 6 H 1.08000 * 119.99590 * 0.02562 * 5 4 3 7 7 C 1.37868 * 120.00319 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99692 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00496 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47823 * 180.02562 * 9 7 5 11 11 H 1.48510 * 109.47021 * 300.00037 * 9 7 5 12 12 H 1.48501 * 109.47477 * 59.99607 * 9 7 5 13 13 C 1.34773 * 119.99509 * 272.37028 * 3 2 1 14 14 O 1.21287 * 120.00414 * 4.95918 * 13 3 2 15 15 C 1.50701 * 119.99872 * 184.95526 * 13 3 2 16 16 H 1.08998 * 109.47417 * 329.71837 * 15 13 3 17 17 C 1.53005 * 109.47063 * 89.71882 * 15 13 3 18 18 C 1.52996 * 109.47533 * 209.71797 * 15 13 3 19 19 H 1.09008 * 109.82562 * 300.56665 * 18 15 13 20 20 C 1.54383 * 109.83456 * 179.58887 * 18 15 13 21 21 C 1.55302 * 102.25428 * 219.12732 * 20 18 15 22 22 C 1.54947 * 100.93962 * 34.13201 * 21 20 18 23 23 O 1.43242 * 109.83203 * 61.45120 * 18 15 13 24 24 H 1.09004 * 109.46861 * 175.29429 * 1 2 3 25 25 H 1.08995 * 109.47341 * 295.29548 * 1 2 3 26 26 H 1.08997 * 109.47034 * 55.29987 * 1 2 3 27 27 H 1.08997 * 109.47265 * 239.99523 * 2 1 3 28 28 H 1.09007 * 109.46871 * 119.99545 * 2 1 3 29 29 H 1.09006 * 109.46821 * 330.12119 * 4 3 2 30 30 H 1.08994 * 109.46983 * 210.12195 * 4 3 2 31 31 H 0.96994 * 120.00322 * 359.97438 * 8 7 5 32 32 H 1.08997 * 109.47041 * 186.09533 * 17 15 13 33 33 H 1.09000 * 109.46633 * 306.09498 * 17 15 13 34 34 H 1.09002 * 109.47130 * 66.09100 * 17 15 13 35 35 H 1.09000 * 110.84567 * 337.32227 * 20 18 15 36 36 H 1.09000 * 110.84715 * 100.93950 * 20 18 15 37 37 H 1.09002 * 111.12596 * 276.21482 * 21 20 18 38 38 H 1.08997 * 111.15828 * 152.06475 * 21 20 18 39 39 H 1.09003 * 110.31047 * 204.63355 * 22 21 20 40 40 H 1.09010 * 110.30860 * 82.47041 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3120 2.0544 1.2676 5 6 3.7519 1.8146 1.6420 6 1 4.3850 1.2205 0.9997 7 6 4.2612 2.3544 2.8039 8 7 3.4903 3.0783 3.5858 9 14 6.0462 2.0577 3.2676 10 1 6.3439 2.7399 4.5526 11 1 6.2833 0.5991 3.4157 12 1 6.9304 2.5973 2.2036 13 6 2.1974 2.0326 -1.1662 14 8 1.8700 1.5087 -2.2100 15 6 2.8044 3.4119 -1.1734 16 1 2.5485 3.9264 -0.2472 17 6 4.3258 3.2990 -1.2905 18 6 2.2587 4.2031 -2.3638 19 1 2.5029 3.6883 -3.2931 20 6 2.8676 5.6218 -2.3732 21 6 1.6591 6.4964 -2.8050 22 6 0.4890 5.7318 -2.1363 23 8 0.8381 4.3426 -2.2444 24 1 -0.3633 -1.0242 -0.0843 25 1 -0.3634 0.4391 0.9291 26 1 -0.3633 0.5850 -0.8449 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6627 1.6581 2.0484 30 1 2.1382 3.1250 1.1592 31 1 2.5635 3.2327 3.3448 32 1 4.7725 4.2878 -1.1870 33 1 4.7031 2.6457 -0.5038 34 1 4.5854 2.8829 -2.2639 35 1 3.2135 5.9020 -1.3783 36 1 3.6766 5.6918 -3.1004 37 1 1.5511 6.5092 -3.8896 38 1 1.7444 7.5083 -2.4091 39 1 -0.4435 5.9298 -2.6649 40 1 0.3992 6.0189 -1.0885 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720609327.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:03 Heat of formation + Delta-G solvation = -118.208512 kcal Electronic energy + Delta-G solvation = -20446.578458 eV Core-core repulsion = 17452.975013 eV Total energy + Delta-G solvation = -2993.603445 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.41449 -39.95107 -37.07043 -35.25133 -34.67025 -32.92590 -31.78976 -28.93805 -28.49411 -25.96556 -25.03354 -24.10504 -22.74783 -21.77575 -20.06776 -18.80860 -18.24199 -17.59435 -17.34135 -16.77563 -16.05791 -15.62280 -15.46250 -15.27583 -14.87868 -14.43666 -14.14629 -14.07179 -13.67613 -13.64365 -13.31845 -13.18025 -13.02862 -12.73450 -12.57316 -12.54910 -12.27946 -12.10044 -11.99253 -11.93205 -11.88915 -11.63326 -11.18591 -10.67163 -10.46223 -10.45975 -9.47954 -8.60842 -6.38484 1.57096 1.62270 1.75477 1.82104 2.25032 2.57540 2.89065 3.15668 3.53942 3.61590 3.80135 3.95530 4.10052 4.12356 4.22750 4.29300 4.37569 4.40731 4.43628 4.58262 4.65981 4.77128 4.79369 4.81561 4.85756 4.88982 4.92600 4.93212 4.99881 5.11755 5.18607 5.26265 5.35366 5.70526 5.84119 6.11478 6.14107 6.49024 6.64741 7.28974 7.41498 8.73370 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.017417 B = 0.008008 C = 0.006415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.279045 B = 3495.548086 C = 4364.002520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.110 3.890 3 N -0.600 5.600 4 C 0.242 3.758 5 C -0.608 4.608 6 H 0.050 0.950 7 C -0.018 4.018 8 N -0.929 5.929 9 Si 1.108 2.892 10 H -0.285 1.285 11 H -0.276 1.276 12 H -0.267 1.267 13 C 0.523 3.477 14 O -0.592 6.592 15 C -0.112 4.112 16 H 0.080 0.920 17 C -0.132 4.132 18 C 0.098 3.902 19 H 0.075 0.925 20 C -0.145 4.145 21 C -0.143 4.143 22 C 0.034 3.966 23 O -0.407 6.407 24 H 0.089 0.911 25 H 0.050 0.950 26 H 0.038 0.962 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.010 0.990 30 H 0.018 0.982 31 H 0.258 0.742 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.992 5.242 -9.335 10.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 N -0.330 5.330 4 C 0.121 3.879 5 C -0.646 4.646 6 H 0.068 0.932 7 C -0.217 4.217 8 N -0.565 5.565 9 Si 0.930 3.070 10 H -0.210 1.210 11 H -0.202 1.202 12 H -0.192 1.192 13 C 0.312 3.688 14 O -0.474 6.474 15 C -0.133 4.133 16 H 0.098 0.902 17 C -0.189 4.189 18 C 0.040 3.960 19 H 0.093 0.907 20 C -0.182 4.182 21 C -0.180 4.180 22 C -0.042 4.042 23 O -0.327 6.327 24 H 0.108 0.892 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.028 0.972 30 H 0.036 0.964 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.124 0.876 37 H 0.108 0.892 38 H 0.124 0.876 39 H 0.115 0.885 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.184 5.108 -8.694 10.085 hybrid contribution -1.396 -0.433 -0.689 1.616 sum -1.580 4.675 -9.384 10.602 Atomic orbital electron populations 1.21993 0.95002 1.02926 1.00958 1.21384 0.95070 0.82688 1.02098 1.48129 1.63668 1.14186 1.07032 1.19190 0.96004 0.92036 0.80701 1.22405 0.96376 1.36162 1.09705 0.93220 1.27025 1.09088 0.92795 0.92841 1.70932 1.08135 1.37985 1.39479 0.83034 0.70533 0.76915 0.76542 1.21036 1.20171 1.19177 1.20803 0.77015 0.88339 0.82620 1.90538 1.53908 1.70282 1.32720 1.21647 0.98287 0.92786 1.00576 0.90173 1.21658 0.90985 1.03972 1.02287 1.22656 0.80556 0.96794 0.95979 0.90745 1.23211 0.99535 0.91718 1.03731 1.23248 0.92653 1.00094 1.02038 1.23640 0.99696 0.80481 1.00340 1.88492 1.22849 1.26735 1.94610 0.89215 0.93082 0.94286 0.91578 0.90416 0.97188 0.96378 0.93250 0.89516 0.92073 0.92092 0.90205 0.87627 0.89208 0.87575 0.88503 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.21 10.23 71.98 0.74 -4.47 16 2 C 0.11 4.40 6.06 86.38 0.52 4.92 16 3 N -0.60 -27.26 2.46 -826.14 -2.03 -29.29 16 4 C 0.24 11.90 4.22 85.63 0.36 12.26 16 5 C -0.61 -31.50 7.96 25.60 0.20 -31.29 16 6 H 0.05 2.62 7.20 -2.91 -0.02 2.60 16 7 C -0.02 -0.93 5.46 84.65 0.46 -0.47 16 8 N -0.93 -52.54 13.65 21.44 0.29 -52.24 16 9 Si 1.11 46.78 29.90 68.60 2.05 48.83 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 11 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 12 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 13 C 0.52 23.68 6.41 87.66 0.56 24.24 16 14 O -0.59 -28.98 15.84 -3.05 -0.05 -29.03 16 15 C -0.11 -4.35 1.84 -11.54 -0.02 -4.37 16 16 H 0.08 3.40 5.82 -2.39 -0.01 3.38 16 17 C -0.13 -4.61 8.83 71.98 0.64 -3.98 16 18 C 0.10 3.28 2.69 31.06 0.08 3.37 16 19 H 0.07 2.62 7.85 -2.38 -0.02 2.60 16 20 C -0.14 -3.43 5.57 31.85 0.18 -3.25 16 21 C -0.14 -2.81 7.16 32.05 0.23 -2.58 16 22 C 0.03 0.89 7.78 72.65 0.56 1.46 16 23 O -0.41 -14.89 10.69 -148.98 -1.59 -16.48 16 24 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.07 2.64 7.57 -2.39 -0.02 2.62 16 28 H 0.08 3.01 8.05 -2.38 -0.02 3.00 16 29 H 0.01 0.52 7.94 -2.38 -0.02 0.50 16 30 H 0.02 0.94 5.76 -2.39 -0.01 0.92 16 31 H 0.26 14.71 7.22 -92.71 -0.67 14.04 16 32 H 0.09 2.53 7.27 -2.39 -0.02 2.51 16 33 H 0.06 2.50 5.91 -2.39 -0.01 2.48 16 34 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.08 1.94 7.56 -2.39 -0.02 1.92 16 36 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 Total: -1.00 -65.44 319.49 4.29 -61.15 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 1.10 Total: 21.22 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: 4.52 Total: -4.17 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -1.74 Total: -81.53 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -1.64 Total: -45.51 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.05 Total: 48.83 kcal Total: -65.44 4.29 -61.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720609327.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.058 kcal (2) G-P(sol) polarization free energy of solvation -65.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds