Wall clock time and date at job start Mon Mar 30 2020 03:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47173 * 2 1 4 4 C 1.46503 * 120.00227 * 264.70741 * 3 2 1 5 5 C 1.50704 * 109.47330 * 276.28001 * 4 3 2 6 6 H 1.08000 * 119.99641 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00180 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99863 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99865 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46693 * 90.00405 * 9 7 5 11 11 H 1.48491 * 109.47184 * 210.00194 * 9 7 5 12 12 H 1.48498 * 109.47282 * 330.00560 * 9 7 5 13 13 C 1.34774 * 120.00170 * 84.71267 * 3 2 1 14 14 O 1.21282 * 119.99947 * 4.95601 * 13 3 2 15 15 C 1.50699 * 120.00273 * 184.68349 * 13 3 2 16 16 H 1.09001 * 109.47377 * 305.55722 * 15 13 3 17 17 C 1.53005 * 109.47016 * 65.55103 * 15 13 3 18 18 C 1.52999 * 109.47180 * 185.54958 * 15 13 3 19 19 H 1.08998 * 110.26989 * 60.64292 * 18 15 13 20 20 C 1.54952 * 110.30689 * 182.83103 * 18 15 13 21 21 C 1.55305 * 100.93799 * 155.36060 * 20 18 15 22 22 C 1.54383 * 102.25825 * 325.87094 * 21 20 18 23 23 O 1.43245 * 107.58534 * 21.35372 * 22 21 20 24 24 H 1.08996 * 109.47327 * 59.99584 * 1 2 3 25 25 H 1.08993 * 109.47139 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46795 * 299.99974 * 1 2 3 27 27 H 1.09002 * 109.47199 * 240.00305 * 2 1 3 28 28 H 1.08997 * 109.47640 * 119.99970 * 2 1 3 29 29 H 1.09003 * 109.46919 * 36.27333 * 4 3 2 30 30 H 1.08995 * 109.47270 * 156.27269 * 4 3 2 31 31 H 0.97008 * 119.99875 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47305 * 311.42973 * 17 15 13 33 33 H 1.08999 * 109.47026 * 71.43043 * 17 15 13 34 34 H 1.09001 * 109.47044 * 191.43247 * 17 15 13 35 35 H 1.08996 * 111.13100 * 273.27826 * 20 18 15 36 36 H 1.08997 * 111.12206 * 37.44704 * 20 18 15 37 37 H 1.09006 * 110.85004 * 207.67503 * 21 20 18 38 38 H 1.09011 * 111.01999 * 84.13951 * 21 20 18 39 39 H 1.09000 * 109.82888 * 261.84720 * 22 21 20 40 40 H 1.08996 * 109.90644 * 140.90798 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3728 2.0329 -1.2633 5 6 3.7822 1.6583 -1.6437 6 1 4.3564 1.0009 -1.0077 7 6 4.3387 2.1556 -2.8029 8 7 5.5687 1.8291 -3.1345 9 14 3.3456 3.2932 -3.9025 10 1 3.5671 4.7014 -3.4864 11 1 3.7774 3.1200 -5.3126 12 1 1.9028 2.9627 -3.7824 13 6 2.1415 2.0524 1.1622 14 8 1.9346 1.4860 2.2145 15 6 2.5424 3.5051 1.1546 16 1 3.4727 3.6225 0.5987 17 6 1.4424 4.3342 0.4885 18 6 2.7434 3.9863 2.5930 19 1 3.5330 3.4112 3.0766 20 6 3.0871 5.4971 2.6116 21 6 2.6141 5.8893 4.0379 22 6 1.3893 4.9716 4.2410 23 8 1.5178 3.8711 3.3331 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6868 1.7071 -2.0452 30 1 2.3032 3.1143 -1.1464 31 1 5.9602 2.1787 -3.9503 32 1 1.1572 3.8685 -0.4548 33 1 0.5749 4.3826 1.1467 34 1 1.8115 5.3422 0.2991 35 1 4.1588 5.6578 2.4951 36 1 2.5256 6.0370 1.8492 37 1 2.3227 6.9391 4.0750 38 1 3.3855 5.6762 4.7780 39 1 0.4742 5.5234 4.0260 40 1 1.3671 4.6040 5.2669 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720609329.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:06 Heat of formation + Delta-G solvation = -84.319434 kcal Electronic energy + Delta-G solvation = -20366.447766 eV Core-core repulsion = 17374.313862 eV Total energy + Delta-G solvation = -2992.133904 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.95151 -38.50749 -35.17068 -33.62910 -32.61221 -31.82573 -30.37655 -27.83234 -27.55142 -24.69365 -22.91713 -22.44596 -21.59884 -20.25546 -18.00544 -17.01538 -16.79128 -16.14735 -15.73157 -15.24295 -14.64347 -14.34068 -14.08231 -13.90867 -13.30234 -13.09976 -12.84928 -12.39775 -12.38811 -12.05122 -11.77503 -11.64382 -11.51809 -11.38900 -11.35028 -10.95608 -10.81494 -10.75528 -10.57287 -10.48698 -10.34135 -10.20068 -9.56090 -9.17764 -8.84742 -8.67806 -7.63251 -6.20963 -4.21751 3.16102 3.24996 3.25855 3.49279 3.88964 4.08616 4.26467 4.57288 4.84613 5.00046 5.09023 5.20888 5.26902 5.35211 5.47945 5.63690 5.68045 5.71985 5.80895 5.84779 5.89359 5.89812 5.98986 6.04143 6.13504 6.18559 6.29916 6.36900 6.42477 6.52137 6.62051 6.66914 6.78452 7.35683 7.43932 7.51167 8.20349 8.49023 8.85152 9.07610 9.39140 10.91903 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.019625 B = 0.007552 C = 0.006182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.416179 B = 3706.920578 C = 4527.863377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.117 3.883 3 N -0.593 5.593 4 C 0.197 3.803 5 C -0.540 4.540 6 H 0.077 0.923 7 C 0.075 3.925 8 N -0.892 5.892 9 Si 0.869 3.131 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.264 1.264 13 C 0.524 3.476 14 O -0.553 6.553 15 C -0.110 4.110 16 H 0.116 0.884 17 C -0.149 4.149 18 C 0.106 3.894 19 H 0.072 0.928 20 C -0.157 4.157 21 C -0.155 4.155 22 C 0.048 3.952 23 O -0.356 6.356 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.029 0.971 30 H 0.045 0.955 31 H 0.266 0.734 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.623 7.584 8.150 13.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.006 4.006 3 N -0.324 5.324 4 C 0.076 3.924 5 C -0.578 4.578 6 H 0.096 0.904 7 C -0.128 4.128 8 N -0.530 5.530 9 Si 0.695 3.305 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.188 1.188 13 C 0.312 3.688 14 O -0.432 6.432 15 C -0.131 4.131 16 H 0.134 0.866 17 C -0.206 4.206 18 C 0.048 3.952 19 H 0.090 0.910 20 C -0.194 4.194 21 C -0.192 4.192 22 C -0.030 4.030 23 O -0.275 6.275 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.739 7.129 8.512 13.534 hybrid contribution -0.072 0.788 -0.835 1.151 sum -7.811 7.917 7.677 13.514 Atomic orbital electron populations 1.22117 0.97063 1.01222 1.01764 1.21200 0.93049 0.83721 1.02661 1.47888 1.63677 1.13279 1.07593 1.20064 0.96781 0.94035 0.81549 1.21430 0.97062 1.31127 1.08178 0.90442 1.24881 0.94738 0.95998 0.97195 1.69898 1.13765 1.44461 1.24878 0.86954 0.81158 0.81718 0.80633 1.19772 1.20886 1.18810 1.20212 0.76862 0.88348 0.83358 1.90622 1.51760 1.69845 1.30988 1.21443 1.02172 0.93422 0.96094 0.86622 1.21956 0.98217 0.99270 1.01155 1.22679 0.87280 0.94245 0.91030 0.90975 1.23426 1.02624 0.96302 0.97074 1.23095 0.98324 1.00319 0.97506 1.23071 0.97555 0.88169 0.94157 1.88601 1.40214 1.44746 1.53965 0.92944 0.92410 0.92685 0.90258 0.91208 0.95309 0.93789 0.92410 0.90960 0.91795 0.92044 0.89824 0.89741 0.90451 0.90773 0.92004 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 10.20 37.16 0.38 -2.28 16 2 C 0.12 2.25 6.13 -4.04 -0.02 2.22 16 3 N -0.59 -12.61 2.47 -175.06 -0.43 -13.04 16 4 C 0.20 4.39 3.48 -5.19 -0.02 4.37 16 5 C -0.54 -14.32 9.93 -34.44 -0.34 -14.67 16 6 H 0.08 2.32 8.06 -52.49 -0.42 1.89 16 7 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 8 N -0.89 -25.95 13.96 55.43 0.77 -25.17 16 9 Si 0.87 19.66 27.47 -169.99 -4.67 14.99 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 12 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 13 C 0.52 11.17 6.85 -10.99 -0.08 11.09 16 14 O -0.55 -13.03 14.93 -12.66 -0.19 -13.22 16 15 C -0.11 -1.99 1.86 -91.77 -0.17 -2.16 16 16 H 0.12 2.17 7.73 -51.93 -0.40 1.77 16 17 C -0.15 -2.35 7.97 37.16 0.30 -2.06 16 18 C 0.11 1.72 2.73 -25.70 -0.07 1.65 16 19 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 20 C -0.16 -1.93 6.45 -24.48 -0.16 -2.09 16 21 C -0.15 -1.64 7.02 -24.78 -0.17 -1.81 16 22 C 0.05 0.60 7.79 37.88 0.30 0.90 16 23 O -0.36 -6.15 9.09 -53.45 -0.49 -6.63 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.08 1.51 8.03 -51.93 -0.42 1.09 16 28 H 0.07 1.38 7.52 -51.93 -0.39 0.99 16 29 H 0.03 0.64 7.18 -51.93 -0.37 0.27 16 30 H 0.04 0.93 3.56 -51.93 -0.18 0.75 16 31 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.07 1.20 5.44 -51.93 -0.28 0.92 16 33 H 0.06 1.00 7.36 -51.93 -0.38 0.62 16 34 H 0.06 0.82 6.67 -51.93 -0.35 0.48 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 0.99 5.99 -51.93 -0.31 0.68 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 313.68 15.07 4.73 4.73 Total: -1.00 -31.10 313.68 -6.92 -38.02 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.48 Total: 3.21 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -0.16 Total: -2.90 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.34 Total: -38.21 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.68 Total: -19.85 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.67 Total: 14.99 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.10 -6.92 -38.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720609329.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.296 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds