Wall clock time and date at job start Mon Mar 30 2020 03:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47173 * 2 1 4 4 C 1.46503 * 120.00227 * 264.70741 * 3 2 1 5 5 C 1.50704 * 109.47330 * 276.28001 * 4 3 2 6 6 H 1.08000 * 119.99641 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00180 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99863 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99865 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46693 * 90.00405 * 9 7 5 11 11 H 1.48491 * 109.47184 * 210.00194 * 9 7 5 12 12 H 1.48498 * 109.47282 * 330.00560 * 9 7 5 13 13 C 1.34774 * 120.00170 * 84.71267 * 3 2 1 14 14 O 1.21282 * 119.99947 * 4.95601 * 13 3 2 15 15 C 1.50699 * 120.00273 * 184.68349 * 13 3 2 16 16 H 1.09001 * 109.47377 * 305.55722 * 15 13 3 17 17 C 1.53005 * 109.47016 * 65.55103 * 15 13 3 18 18 C 1.52999 * 109.47180 * 185.54958 * 15 13 3 19 19 H 1.08998 * 110.26989 * 60.64292 * 18 15 13 20 20 C 1.54952 * 110.30689 * 182.83103 * 18 15 13 21 21 C 1.55305 * 100.93799 * 155.36060 * 20 18 15 22 22 C 1.54383 * 102.25825 * 325.87094 * 21 20 18 23 23 O 1.43245 * 107.58534 * 21.35372 * 22 21 20 24 24 H 1.08996 * 109.47327 * 59.99584 * 1 2 3 25 25 H 1.08993 * 109.47139 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46795 * 299.99974 * 1 2 3 27 27 H 1.09002 * 109.47199 * 240.00305 * 2 1 3 28 28 H 1.08997 * 109.47640 * 119.99970 * 2 1 3 29 29 H 1.09003 * 109.46919 * 36.27333 * 4 3 2 30 30 H 1.08995 * 109.47270 * 156.27269 * 4 3 2 31 31 H 0.97008 * 119.99875 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47305 * 311.42973 * 17 15 13 33 33 H 1.08999 * 109.47026 * 71.43043 * 17 15 13 34 34 H 1.09001 * 109.47044 * 191.43247 * 17 15 13 35 35 H 1.08996 * 111.13100 * 273.27826 * 20 18 15 36 36 H 1.08997 * 111.12206 * 37.44704 * 20 18 15 37 37 H 1.09006 * 110.85004 * 207.67503 * 21 20 18 38 38 H 1.09011 * 111.01999 * 84.13951 * 21 20 18 39 39 H 1.09000 * 109.82888 * 261.84720 * 22 21 20 40 40 H 1.08996 * 109.90644 * 140.90798 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3728 2.0329 -1.2633 5 6 3.7822 1.6583 -1.6437 6 1 4.3564 1.0009 -1.0077 7 6 4.3387 2.1556 -2.8029 8 7 5.5687 1.8291 -3.1345 9 14 3.3456 3.2932 -3.9025 10 1 3.5671 4.7014 -3.4864 11 1 3.7774 3.1200 -5.3126 12 1 1.9028 2.9627 -3.7824 13 6 2.1415 2.0524 1.1622 14 8 1.9346 1.4860 2.2145 15 6 2.5424 3.5051 1.1546 16 1 3.4727 3.6225 0.5987 17 6 1.4424 4.3342 0.4885 18 6 2.7434 3.9863 2.5930 19 1 3.5330 3.4112 3.0766 20 6 3.0871 5.4971 2.6116 21 6 2.6141 5.8893 4.0379 22 6 1.3893 4.9716 4.2410 23 8 1.5178 3.8711 3.3331 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6868 1.7071 -2.0452 30 1 2.3032 3.1143 -1.1464 31 1 5.9602 2.1787 -3.9503 32 1 1.1572 3.8685 -0.4548 33 1 0.5749 4.3826 1.1467 34 1 1.8115 5.3422 0.2991 35 1 4.1588 5.6578 2.4951 36 1 2.5256 6.0370 1.8492 37 1 2.3227 6.9391 4.0750 38 1 3.3855 5.6762 4.7780 39 1 0.4742 5.5234 4.0260 40 1 1.3671 4.6040 5.2669 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720609329.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:06 Heat of formation + Delta-G solvation = -103.459795 kcal Electronic energy + Delta-G solvation = -20367.277754 eV Core-core repulsion = 17374.313862 eV Total energy + Delta-G solvation = -2992.963893 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.37967 -39.87502 -36.92646 -35.02231 -34.58814 -32.87267 -31.91115 -29.47804 -28.92282 -26.03368 -24.51868 -24.11486 -22.57778 -21.57707 -19.60437 -19.05737 -18.09373 -17.61352 -17.21652 -16.50545 -16.24615 -16.00603 -15.34840 -15.18404 -14.78682 -14.68011 -14.26342 -14.11923 -13.75529 -13.44490 -13.28325 -12.96916 -12.84241 -12.66688 -12.60052 -12.43763 -12.26320 -12.08234 -12.01839 -11.85796 -11.81383 -11.57787 -11.51811 -10.78374 -10.45137 -10.35010 -9.38762 -8.29253 -6.37042 1.41119 1.43493 1.53365 1.82441 2.32055 2.36063 2.95457 3.04639 3.57996 3.65821 3.87665 4.02606 4.10306 4.17689 4.22979 4.38508 4.42802 4.48379 4.52871 4.66634 4.70303 4.80489 4.83869 4.88472 4.91576 4.92509 4.97554 5.02057 5.03950 5.13090 5.23622 5.28185 5.37596 5.50540 5.78220 6.19217 6.25304 6.65373 6.72598 7.25665 7.42039 8.87441 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.019625 B = 0.007552 C = 0.006182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.416179 B = 3706.920578 C = 4527.863377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.109 3.891 3 N -0.600 5.600 4 C 0.207 3.793 5 C -0.545 4.545 6 H 0.024 0.976 7 C 0.018 3.982 8 N -0.945 5.945 9 Si 0.940 3.060 10 H -0.253 1.253 11 H -0.286 1.286 12 H -0.238 1.238 13 C 0.514 3.486 14 O -0.583 6.583 15 C -0.110 4.110 16 H 0.104 0.896 17 C -0.142 4.142 18 C 0.102 3.898 19 H 0.047 0.953 20 C -0.150 4.150 21 C -0.144 4.144 22 C 0.037 3.963 23 O -0.388 6.388 24 H 0.061 0.939 25 H 0.085 0.915 26 H 0.041 0.959 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.269 0.731 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.605 10.263 7.602 15.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 N -0.331 5.331 4 C 0.086 3.914 5 C -0.583 4.583 6 H 0.042 0.958 7 C -0.181 4.181 8 N -0.584 5.584 9 Si 0.762 3.238 10 H -0.177 1.177 11 H -0.212 1.212 12 H -0.161 1.161 13 C 0.304 3.696 14 O -0.464 6.464 15 C -0.132 4.132 16 H 0.122 0.878 17 C -0.199 4.199 18 C 0.044 3.956 19 H 0.065 0.935 20 C -0.187 4.187 21 C -0.182 4.182 22 C -0.040 4.040 23 O -0.308 6.308 24 H 0.080 0.920 25 H 0.103 0.897 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.125 0.875 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.739 9.804 7.985 15.961 hybrid contribution 0.616 -0.180 -0.567 0.856 sum -9.123 9.624 7.418 15.195 Atomic orbital electron populations 1.21988 0.94212 1.03009 1.01490 1.21348 0.95368 0.82921 1.01779 1.48029 1.63618 1.13974 1.07456 1.19937 0.94089 0.95299 0.82120 1.21561 0.98848 1.30247 1.07678 0.95810 1.25840 0.95744 0.97748 0.98762 1.70068 1.16141 1.46383 1.25807 0.85819 0.80506 0.79854 0.77623 1.17698 1.21208 1.16090 1.20914 0.76126 0.89804 0.82799 1.90592 1.53074 1.70835 1.31875 1.21492 1.02331 0.91547 0.97789 0.87810 1.21926 0.97374 1.00235 1.00316 1.22628 0.86637 0.96761 0.89571 0.93544 1.23420 1.03546 0.93027 0.98717 1.23086 0.97348 1.01412 0.96308 1.23336 0.99358 0.87731 0.93554 1.88561 1.40330 1.47021 1.54912 0.91970 0.89662 0.93977 0.90578 0.92684 0.94171 0.91585 0.92238 0.91643 0.91631 0.88983 0.88819 0.88456 0.87510 0.90261 0.90389 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.66 10.20 71.98 0.73 -3.93 16 2 C 0.11 4.23 6.13 86.38 0.53 4.76 16 3 N -0.60 -25.74 2.47 -826.16 -2.04 -27.78 16 4 C 0.21 9.05 3.48 85.63 0.30 9.35 16 5 C -0.54 -29.58 9.93 25.60 0.25 -29.33 16 6 H 0.02 1.50 8.06 -2.91 -0.02 1.48 16 7 C 0.02 0.96 5.47 84.65 0.46 1.42 16 8 N -0.94 -56.27 13.96 21.45 0.30 -55.97 16 9 Si 0.94 39.13 27.47 68.60 1.88 41.01 16 10 H -0.25 -9.74 7.11 99.48 0.71 -9.04 16 11 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 12 H -0.24 -8.87 6.54 99.48 0.65 -8.22 16 13 C 0.51 22.29 6.85 87.66 0.60 22.89 16 14 O -0.58 -28.34 14.93 14.38 0.21 -28.13 16 15 C -0.11 -3.93 1.86 -11.54 -0.02 -3.96 16 16 H 0.10 3.91 7.73 -2.39 -0.02 3.89 16 17 C -0.14 -4.11 7.97 71.98 0.57 -3.54 16 18 C 0.10 3.28 2.73 31.26 0.09 3.37 16 19 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 20 C -0.15 -3.31 6.45 32.05 0.21 -3.10 16 21 C -0.14 -2.61 7.02 31.86 0.22 -2.38 16 22 C 0.04 0.85 7.79 72.45 0.56 1.42 16 23 O -0.39 -13.17 9.09 -131.56 -1.20 -14.37 16 24 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.08 2.96 8.03 -2.39 -0.02 2.94 16 28 H 0.05 2.27 7.52 -2.39 -0.02 2.25 16 29 H 0.04 1.69 7.18 -2.39 -0.02 1.67 16 30 H 0.07 2.64 3.56 -2.39 -0.01 2.63 16 31 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16 32 H 0.06 1.98 5.44 -2.39 -0.01 1.97 16 33 H 0.06 1.89 7.36 -2.39 -0.02 1.87 16 34 H 0.09 2.10 6.67 -2.39 -0.02 2.08 16 35 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.10 1.90 5.99 -2.39 -0.01 1.89 16 37 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -70.20 313.68 4.63 -65.57 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.95 Total: 22.68 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 4.51 Total: -3.02 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -1.74 Total: -83.74 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -0.98 Total: -42.50 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 1.88 Total: 41.01 kcal Total: -70.20 4.63 -65.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720609329.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.888 kcal (2) G-P(sol) polarization free energy of solvation -70.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds