Wall clock time and date at job start Mon Mar 30 2020 05:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48559 * 110.99798 * 2 1 4 4 C 1.54375 * 104.59745 * 159.04038 * 3 2 1 5 5 H 1.09004 * 110.32791 * 95.04296 * 4 3 2 6 6 N 1.46902 * 110.32878 * 217.15145 * 4 3 2 7 7 C 1.46898 * 110.99825 * 282.66903 * 6 4 3 8 8 C 1.50700 * 109.47003 * 179.97438 * 7 6 4 9 9 O 1.21291 * 120.00166 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99900 * 179.97438 * 8 7 6 11 11 C 1.37101 * 120.00039 * 180.02562 * 10 8 7 12 12 H 1.07999 * 120.00004 * 359.97438 * 11 10 8 13 13 C 1.38950 * 120.00145 * 180.02562 * 11 10 8 14 14 N 1.31413 * 120.00372 * 179.97438 * 13 11 10 15 15 Si 1.86810 * 119.99898 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.46880 * 90.00709 * 15 13 11 17 17 H 1.48503 * 109.47102 * 210.00447 * 15 13 11 18 18 H 1.48502 * 109.46989 * 330.00329 * 15 13 11 19 19 C 1.54265 * 105.06006 * 336.14719 * 4 3 2 20 20 C 1.52998 * 110.32011 * 118.89521 * 19 4 3 21 21 C 1.52999 * 110.32602 * 241.10389 * 19 4 3 22 22 C 1.48563 * 111.00197 * 115.41861 * 2 1 3 23 23 H 1.09000 * 109.47727 * 59.87674 * 1 2 3 24 24 H 1.08998 * 109.47181 * 299.86750 * 1 2 3 25 25 H 1.09005 * 109.46547 * 179.87425 * 1 2 3 26 26 H 1.08998 * 110.41550 * 277.82324 * 3 2 1 27 27 H 1.09003 * 110.41174 * 40.26379 * 3 2 1 28 28 H 1.00899 * 111.00314 * 158.71004 * 6 4 3 29 29 H 1.09001 * 109.47461 * 299.99552 * 7 6 4 30 30 H 1.09001 * 109.47558 * 59.99566 * 7 6 4 31 31 H 0.97003 * 120.00347 * 0.02562 * 10 8 7 32 32 H 0.96998 * 119.99976 * 179.97438 * 14 13 11 33 33 H 1.08996 * 109.47652 * 60.00352 * 20 19 4 34 34 H 1.09008 * 109.47138 * 180.02562 * 20 19 4 35 35 H 1.09003 * 109.47653 * 299.99990 * 20 19 4 36 36 H 1.09000 * 109.47079 * 54.13308 * 21 19 4 37 37 H 1.08995 * 109.47324 * 174.13902 * 21 19 4 38 38 H 1.09002 * 109.46910 * 294.13933 * 21 19 4 39 39 H 1.08993 * 110.41154 * 319.74009 * 22 2 1 40 40 H 1.09000 * 110.40982 * 82.18850 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3869 0.0000 4 6 3.4431 1.2503 0.5344 5 1 4.1483 1.1750 -0.2935 6 7 3.7815 2.3963 1.3889 7 6 4.0876 3.5837 0.5802 8 6 4.4285 4.7363 1.4892 9 8 4.4180 4.5835 2.6924 10 7 4.7461 5.9367 0.9652 11 6 5.0568 6.9852 1.7921 12 1 5.0466 6.8493 2.8635 13 6 5.3837 8.2230 1.2519 14 7 5.6810 9.2281 2.0445 15 14 5.4006 8.4582 -0.6012 16 1 4.0557 8.8923 -1.0573 17 1 6.4029 9.4937 -0.9597 18 1 5.7566 7.1757 -1.2598 19 6 3.4432 -0.0538 1.3585 20 6 4.4330 -1.0578 0.7642 21 6 3.7947 0.2401 2.8183 22 6 2.0014 -0.5953 1.2527 23 1 -0.3634 0.5157 -0.8888 24 1 -0.3633 0.5118 0.8911 25 1 -0.3632 -1.0277 -0.0023 26 1 2.0077 1.7917 -1.0120 27 1 1.4097 2.0212 0.6603 28 1 4.5468 2.1728 2.0073 29 1 4.9354 3.3712 -0.0711 30 1 3.2200 3.8440 -0.0262 31 1 4.7549 6.0590 0.0029 32 1 5.9095 10.0920 1.6673 33 1 5.4354 -0.6301 0.7753 34 1 4.4216 -1.9731 1.3561 35 1 4.1467 -1.2860 -0.2626 36 1 3.1219 1.0044 3.2072 37 1 3.6895 -0.6707 3.4078 38 1 4.8232 0.5960 2.8798 39 1 1.4099 -0.2713 2.1089 40 1 2.0080 -1.6831 1.1837 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722298029.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:22 Heat of formation + Delta-G solvation = -21.684444 kcal Electronic energy + Delta-G solvation = -19524.792546 eV Core-core repulsion = 16567.667449 eV Total energy + Delta-G solvation = -2957.125096 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -39.95488 -38.28211 -35.23597 -34.03543 -33.44895 -31.64529 -29.13286 -27.64813 -27.09960 -26.07801 -24.15351 -23.01989 -21.02053 -19.39885 -18.90128 -18.24149 -16.25791 -15.98458 -15.49618 -15.24910 -14.87466 -14.48505 -14.24113 -14.02675 -13.36896 -13.28451 -13.22882 -12.86454 -12.60779 -12.29668 -12.20051 -11.91503 -11.80126 -11.60361 -11.48856 -11.32763 -11.15158 -10.80531 -10.66074 -10.58388 -10.49338 -9.97001 -9.56628 -8.62276 -8.55985 -8.18637 -8.12138 -6.30646 -3.82014 3.03051 3.07460 3.15420 3.75250 3.82615 4.10569 4.28555 4.42543 4.51718 4.85092 4.94047 5.13352 5.22063 5.26351 5.31350 5.34856 5.37677 5.52936 5.62699 5.63181 5.68473 5.72431 5.79948 5.82333 5.86159 5.88899 5.99083 6.00117 6.08062 6.19913 6.41758 6.66531 6.87757 7.18921 7.59027 7.61783 8.15224 8.60598 8.95597 9.43221 9.83719 10.82535 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.032354 B = 0.004511 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.212011 B = 6205.850150 C = 6546.832063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.517 5.517 3 C 0.038 3.962 4 C 0.089 3.911 5 H 0.051 0.949 6 N -0.662 5.662 7 C 0.046 3.954 8 C 0.451 3.549 9 O -0.565 6.565 10 N -0.591 5.591 11 C -0.305 4.305 12 H 0.119 0.881 13 C 0.042 3.958 14 N -0.882 5.882 15 Si 0.879 3.121 16 H -0.271 1.271 17 H -0.277 1.277 18 H -0.270 1.270 19 C -0.066 4.066 20 C -0.135 4.135 21 C -0.140 4.140 22 C 0.044 3.956 23 H 0.067 0.933 24 H 0.030 0.970 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.355 0.645 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.370 0.630 32 H 0.273 0.727 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.048 0.952 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.999 -18.936 -7.046 21.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.240 5.240 3 C -0.090 4.090 4 C -0.022 4.022 5 H 0.069 0.931 6 N -0.298 5.298 7 C -0.087 4.087 8 C 0.236 3.764 9 O -0.447 6.447 10 N -0.231 5.231 11 C -0.434 4.434 12 H 0.137 0.863 13 C -0.161 4.161 14 N -0.522 5.522 15 Si 0.706 3.294 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.195 1.195 19 C -0.067 4.067 20 C -0.193 4.193 21 C -0.197 4.197 22 C -0.084 4.084 23 H 0.086 0.914 24 H 0.048 0.952 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.178 0.822 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.203 0.797 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.431 -18.922 -6.563 21.035 hybrid contribution 0.588 0.720 -1.205 1.522 sum -5.843 -18.202 -7.767 20.634 Atomic orbital electron populations 1.22492 0.88152 1.01856 1.00985 1.65344 1.08043 1.15733 1.34917 1.23197 0.95141 0.89866 1.00812 1.22286 0.96068 0.89783 0.94065 0.93144 1.60353 1.47262 1.02441 1.19703 1.21751 1.00228 0.91419 0.95333 1.19720 0.83776 0.83690 0.89166 1.90559 1.55998 1.83131 1.14992 1.42213 1.62759 1.10197 1.07897 1.19433 1.43334 0.87246 0.93350 0.86303 1.25034 0.97473 0.95338 0.98284 1.69622 1.45769 1.01955 1.34853 0.86675 0.78918 0.78580 0.85236 1.19596 1.20184 1.19522 1.21362 0.94983 0.94278 0.96100 1.21857 0.98177 0.98196 1.01041 1.21805 1.02320 1.01629 0.93995 1.23206 0.94379 0.99629 0.91177 0.91398 0.95160 0.91481 0.90573 0.92122 0.82190 0.93764 0.89644 0.79698 0.91626 0.92804 0.92592 0.92036 0.90538 0.92964 0.92391 0.93340 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.53 60.06 0.57 0.71 16 2 N -0.52 -5.81 5.66 -238.24 -1.35 -7.16 16 3 C 0.04 0.47 5.66 -2.18 -0.01 0.46 16 4 C 0.09 1.12 2.99 -66.33 -0.20 0.93 16 5 H 0.05 0.63 7.58 -51.93 -0.39 0.24 16 6 N -0.66 -10.30 4.89 -106.53 -0.52 -10.82 16 7 C 0.05 0.76 6.00 -4.98 -0.03 0.73 16 8 C 0.45 10.29 7.82 -10.99 -0.09 10.20 16 9 O -0.56 -15.18 15.78 5.55 0.09 -15.09 16 10 N -0.59 -14.18 5.09 -10.96 -0.06 -14.24 16 11 C -0.30 -8.68 10.16 -14.93 -0.15 -8.83 16 12 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 13 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 14 N -0.88 -25.88 13.96 55.50 0.77 -25.11 16 15 Si 0.88 19.46 27.74 -169.99 -4.71 14.75 16 16 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.27 -5.45 6.52 56.52 0.37 -5.08 16 19 C -0.07 -0.73 1.03 -153.12 -0.16 -0.89 16 20 C -0.14 -1.30 8.23 37.16 0.31 -0.99 16 21 C -0.14 -1.60 7.18 37.16 0.27 -1.34 16 22 C 0.04 0.47 5.59 -2.18 -0.01 0.46 16 23 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.03 0.30 7.97 -51.93 -0.41 -0.12 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.84 7.89 -51.93 -0.41 0.43 16 28 H 0.36 5.74 6.05 -39.29 -0.24 5.50 16 29 H 0.04 0.66 8.11 -51.93 -0.42 0.24 16 30 H 0.09 1.30 7.76 -51.93 -0.40 0.90 16 31 H 0.37 7.82 5.76 -40.82 -0.24 7.58 16 32 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 1.04 7.57 -51.93 -0.39 0.65 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.68 7.05 -51.93 -0.37 0.32 16 39 H 0.05 0.54 7.62 -51.93 -0.40 0.14 16 40 H 0.08 0.75 7.86 -51.93 -0.41 0.34 16 LS Contribution 317.43 15.07 4.78 4.78 Total: -1.00 -31.55 317.43 -7.18 -38.73 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -6.59 Total: 11.68 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 0.40 Total: 2.48 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -1.15 Total: -57.33 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: 0.09 Total: -15.09 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.71 Total: 14.75 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.55 -7.18 -38.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722298029.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.049 kcal (2) G-P(sol) polarization free energy of solvation -31.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds