Wall clock time and date at job start Mon Mar 30 2020 04:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45192 * 109.47382 * 2 1 4 4 C 1.34227 * 117.00475 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99191 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00608 * 180.02562 * 4 3 2 7 7 C 1.52994 * 109.46445 * 84.97229 * 6 4 3 8 8 C 1.52992 * 109.47343 * 300.02562 * 7 6 4 9 9 C 1.50709 * 109.46881 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99820 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99675 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99986 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99666 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46884 * 90.00243 * 13 11 9 15 15 H 1.48492 * 109.46987 * 209.99836 * 13 11 9 16 16 H 1.48500 * 109.47173 * 330.00407 * 13 11 9 17 17 C 1.53039 * 109.46155 * 204.94625 * 6 4 3 18 18 C 1.53126 * 109.28009 * 60.83099 * 17 6 4 19 19 C 1.53099 * 109.15071 * 57.65227 * 18 17 6 20 20 C 1.53034 * 109.29509 * 302.33888 * 19 18 17 21 21 N 1.46847 * 109.51345 * 59.18740 * 20 19 18 22 22 H 1.09001 * 109.47121 * 300.00254 * 1 2 3 23 23 H 1.08999 * 109.46776 * 59.99569 * 1 2 3 24 24 H 1.08998 * 109.47748 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.46573 * 239.99909 * 2 1 3 26 26 H 1.09003 * 109.46417 * 120.00096 * 2 1 3 27 27 H 1.09003 * 109.46970 * 60.02699 * 7 6 4 28 28 H 1.09007 * 109.46858 * 180.02562 * 7 6 4 29 29 H 1.09007 * 109.46954 * 299.99544 * 8 7 6 30 30 H 1.08997 * 109.47538 * 59.99927 * 8 7 6 31 31 H 0.97003 * 119.99521 * 179.97438 * 12 11 9 32 32 H 1.08994 * 109.50227 * 180.76925 * 17 6 4 33 33 H 1.08998 * 109.50241 * 300.84979 * 17 6 4 34 34 H 1.08990 * 109.52264 * 177.55890 * 18 17 6 35 35 H 1.09002 * 109.52383 * 297.68676 * 18 17 6 36 36 H 1.09007 * 109.48839 * 182.39531 * 19 18 17 37 37 H 1.09009 * 109.50682 * 62.29317 * 19 18 17 38 38 H 1.09002 * 109.46271 * 299.17460 * 20 19 18 39 39 H 1.08994 * 109.46242 * 179.19760 * 20 19 18 40 40 H 1.00893 * 111.00252 * 62.36001 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9209 2.9373 0.0000 7 6 3.9996 3.4559 1.4372 8 6 2.5968 3.4835 2.0471 9 6 2.6744 3.9949 3.4626 10 1 3.6290 4.2720 3.8850 11 6 1.5268 4.1089 4.2183 12 7 0.3644 3.7719 3.7036 13 14 1.6231 4.7421 5.9731 14 1 1.4738 6.2196 5.9750 15 1 0.5346 4.1336 6.7793 16 1 2.9374 4.3767 6.5598 17 6 5.3245 2.9087 -0.6093 18 6 5.2384 2.4083 -2.0539 19 6 4.2976 3.3201 -2.8460 20 6 2.9237 3.3368 -2.1722 21 7 3.0595 3.8234 -0.7934 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 4.6390 2.7982 2.0262 28 1 4.4159 4.4633 1.4377 29 1 1.9574 4.1412 1.4581 30 1 2.1805 2.4761 2.0466 31 1 -0.4429 3.8518 4.2355 32 1 5.7471 3.9132 -0.5967 33 1 5.9595 2.2393 -0.0289 34 1 6.2301 2.4274 -2.5056 35 1 4.8531 1.3887 -2.0640 36 1 4.1989 2.9441 -3.8644 37 1 4.7042 4.3312 -2.8687 38 1 2.5116 2.3277 -2.1624 39 1 2.2556 3.9964 -2.7259 40 1 3.4034 4.7718 -0.7768 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722708727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:14 Heat of formation + Delta-G solvation = -106.495435 kcal Electronic energy + Delta-G solvation = -20551.442501 eV Core-core repulsion = 17558.346973 eV Total energy + Delta-G solvation = -2993.095528 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.69578 -38.13952 -36.01541 -34.06987 -32.24505 -31.47242 -31.10732 -29.08979 -25.46061 -24.20126 -23.32610 -22.22040 -21.56928 -19.99600 -19.27440 -17.23446 -16.60494 -15.92456 -15.58630 -15.18929 -14.63564 -14.39212 -14.06463 -13.71674 -13.47150 -13.10720 -12.66774 -12.41094 -12.29776 -12.22036 -11.91055 -11.62074 -11.43804 -11.25115 -11.13254 -10.92900 -10.89036 -10.71634 -10.46960 -10.33641 -10.05126 -9.87974 -9.62419 -9.29769 -8.92343 -8.24870 -7.97173 -5.88558 -3.90687 2.73407 3.19517 3.36754 3.43013 3.46233 4.38441 4.52541 4.82020 4.93990 5.02315 5.10880 5.23251 5.28501 5.38491 5.46520 5.54420 5.55737 5.59192 5.80005 5.91061 5.93465 5.98343 6.04315 6.12580 6.15234 6.21396 6.31692 6.38851 6.45510 6.60079 6.98044 7.08722 7.24361 7.64571 7.84782 8.03365 8.20534 8.35232 8.53024 9.17756 9.71593 11.21745 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.020592 B = 0.007152 C = 0.006066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.430748 B = 3913.938726 C = 4614.787600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.320 6.320 4 C 0.493 3.507 5 O -0.529 6.529 6 C 0.128 3.872 7 C -0.102 4.102 8 C 0.028 3.972 9 C -0.524 4.524 10 H 0.051 0.949 11 C 0.059 3.941 12 N -0.888 5.888 13 Si 0.886 3.114 14 H -0.281 1.281 15 H -0.288 1.288 16 H -0.276 1.276 17 C -0.137 4.137 18 C -0.125 4.125 19 C -0.160 4.160 20 C 0.052 3.948 21 N -0.652 5.652 22 H 0.076 0.924 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.038 0.962 30 H 0.019 0.981 31 H 0.258 0.742 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.698 -3.093 -12.631 13.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.235 6.235 4 C 0.337 3.663 5 O -0.418 6.418 6 C 0.035 3.965 7 C -0.140 4.140 8 C -0.009 4.009 9 C -0.562 4.562 10 H 0.069 0.931 11 C -0.142 4.142 12 N -0.527 5.527 13 Si 0.714 3.286 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.201 1.201 17 C -0.177 4.177 18 C -0.163 4.163 19 C -0.200 4.200 20 C -0.078 4.078 21 N -0.283 5.283 22 H 0.095 0.905 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.080 -3.715 -12.360 13.535 hybrid contribution 0.947 0.345 0.672 1.211 sum 5.026 -3.370 -11.688 13.162 Atomic orbital electron populations 1.21755 0.92767 1.02055 1.04142 1.22929 0.95611 0.81495 1.01476 1.86772 1.23775 1.30382 1.82576 1.23364 0.80817 0.91640 0.70471 1.90582 1.60969 1.42954 1.47293 1.21038 0.89689 0.87563 0.98179 1.21826 1.03285 0.99922 0.88926 1.19090 0.89091 0.98212 0.94459 1.21296 0.93079 1.43386 0.98455 0.93071 1.24970 0.95590 0.95715 0.97914 1.69995 0.97913 1.48305 1.36528 0.86698 0.77559 0.78995 0.85332 1.20756 1.21345 1.20068 1.22177 0.96775 1.02345 0.96383 1.21640 0.99595 0.99859 0.95200 1.22336 0.97817 1.00110 0.99691 1.22126 0.95197 1.01697 0.88766 1.60476 1.52269 1.05137 1.10406 0.90522 0.91842 0.91084 0.92390 0.91648 0.92425 0.91554 0.94352 0.96275 0.93243 0.90702 0.90293 0.91948 0.91518 0.91772 0.91845 0.91190 0.90248 0.83072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 10.29 37.16 0.38 -1.75 16 2 C 0.06 0.98 6.19 37.16 0.23 1.21 16 3 O -0.32 -6.37 7.84 -39.25 -0.31 -6.68 16 4 C 0.49 9.72 4.03 36.00 0.15 9.87 16 5 O -0.53 -10.91 14.79 -18.75 -0.28 -11.19 16 6 C 0.13 2.27 0.60 -132.76 -0.08 2.19 16 7 C -0.10 -2.11 4.33 -26.74 -0.12 -2.23 16 8 C 0.03 0.74 4.41 -27.88 -0.12 0.62 16 9 C -0.52 -14.94 9.11 -34.43 -0.31 -15.25 16 10 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 11 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 13 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 C -0.14 -2.03 4.52 -26.65 -0.12 -2.15 16 18 C -0.13 -1.65 5.72 -26.62 -0.15 -1.81 16 19 C -0.16 -1.86 6.08 -26.66 -0.16 -2.02 16 20 C 0.05 0.71 6.24 -3.84 -0.02 0.68 16 21 N -0.65 -10.59 5.32 -101.17 -0.54 -11.12 16 22 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 26 H 0.07 1.12 8.13 -51.93 -0.42 0.70 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.07 1.28 8.14 -51.92 -0.42 0.85 16 29 H 0.04 1.06 7.60 -51.93 -0.39 0.66 16 30 H 0.02 0.54 6.40 -51.93 -0.33 0.21 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.23 7.84 -51.93 -0.41 0.83 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 1.01 6.58 -51.93 -0.34 0.66 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.07 1.06 6.46 -51.93 -0.34 0.72 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.35 5.09 8.79 -39.30 -0.35 4.75 16 LS Contribution 316.50 15.07 4.77 4.77 Total: -1.00 -31.85 316.50 -7.84 -39.69 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -6.77 Total: 2.78 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -0.43 Total: -9.02 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.20 Total: -37.20 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.59 Total: -17.87 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.85 -7.84 -39.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722708727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.806 kcal (2) G-P(sol) polarization free energy of solvation -31.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds