Wall clock time and date at job start Mon Mar 30 2020 04:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45192 * 109.47382 * 2 1 4 4 C 1.34227 * 117.00475 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99191 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00608 * 180.02562 * 4 3 2 7 7 C 1.52994 * 109.46445 * 84.97229 * 6 4 3 8 8 C 1.52992 * 109.47343 * 300.02562 * 7 6 4 9 9 C 1.50709 * 109.46881 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99820 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99675 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99986 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99666 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46884 * 90.00243 * 13 11 9 15 15 H 1.48492 * 109.46987 * 209.99836 * 13 11 9 16 16 H 1.48500 * 109.47173 * 330.00407 * 13 11 9 17 17 C 1.53039 * 109.46155 * 204.94625 * 6 4 3 18 18 C 1.53126 * 109.28009 * 60.83099 * 17 6 4 19 19 C 1.53099 * 109.15071 * 57.65227 * 18 17 6 20 20 C 1.53034 * 109.29509 * 302.33888 * 19 18 17 21 21 N 1.46847 * 109.51345 * 59.18740 * 20 19 18 22 22 H 1.09001 * 109.47121 * 300.00254 * 1 2 3 23 23 H 1.08999 * 109.46776 * 59.99569 * 1 2 3 24 24 H 1.08998 * 109.47748 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.46573 * 239.99909 * 2 1 3 26 26 H 1.09003 * 109.46417 * 120.00096 * 2 1 3 27 27 H 1.09003 * 109.46970 * 60.02699 * 7 6 4 28 28 H 1.09007 * 109.46858 * 180.02562 * 7 6 4 29 29 H 1.09007 * 109.46954 * 299.99544 * 8 7 6 30 30 H 1.08997 * 109.47538 * 59.99927 * 8 7 6 31 31 H 0.97003 * 119.99521 * 179.97438 * 12 11 9 32 32 H 1.08994 * 109.50227 * 180.76925 * 17 6 4 33 33 H 1.08998 * 109.50241 * 300.84979 * 17 6 4 34 34 H 1.08990 * 109.52264 * 177.55890 * 18 17 6 35 35 H 1.09002 * 109.52383 * 297.68676 * 18 17 6 36 36 H 1.09007 * 109.48839 * 182.39531 * 19 18 17 37 37 H 1.09009 * 109.50682 * 62.29317 * 19 18 17 38 38 H 1.09002 * 109.46271 * 299.17460 * 20 19 18 39 39 H 1.08994 * 109.46242 * 179.19760 * 20 19 18 40 40 H 1.00893 * 111.00252 * 62.36001 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9209 2.9373 0.0000 7 6 3.9996 3.4559 1.4372 8 6 2.5968 3.4835 2.0471 9 6 2.6744 3.9949 3.4626 10 1 3.6290 4.2720 3.8850 11 6 1.5268 4.1089 4.2183 12 7 0.3644 3.7719 3.7036 13 14 1.6231 4.7421 5.9731 14 1 1.4738 6.2196 5.9750 15 1 0.5346 4.1336 6.7793 16 1 2.9374 4.3767 6.5598 17 6 5.3245 2.9087 -0.6093 18 6 5.2384 2.4083 -2.0539 19 6 4.2976 3.3201 -2.8460 20 6 2.9237 3.3368 -2.1722 21 7 3.0595 3.8234 -0.7934 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 4.6390 2.7982 2.0262 28 1 4.4159 4.4633 1.4377 29 1 1.9574 4.1412 1.4581 30 1 2.1805 2.4761 2.0466 31 1 -0.4429 3.8518 4.2355 32 1 5.7471 3.9132 -0.5967 33 1 5.9595 2.2393 -0.0289 34 1 6.2301 2.4274 -2.5056 35 1 4.8531 1.3887 -2.0640 36 1 4.1989 2.9441 -3.8644 37 1 4.7042 4.3312 -2.8687 38 1 2.5116 2.3277 -2.1624 39 1 2.2556 3.9964 -2.7259 40 1 3.4034 4.7718 -0.7768 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722708727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:14 Heat of formation + Delta-G solvation = -126.412224 kcal Electronic energy + Delta-G solvation = -20552.306158 eV Core-core repulsion = 17558.346973 eV Total energy + Delta-G solvation = -2993.959185 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.13106 -39.46346 -37.52487 -35.85793 -34.05320 -32.71118 -32.37664 -30.78105 -27.15407 -25.78722 -24.57444 -23.60008 -23.08078 -21.45384 -20.69059 -18.72085 -18.51463 -17.63893 -16.99335 -16.53964 -16.37605 -15.78914 -15.31680 -15.10761 -14.73502 -14.48025 -14.30047 -14.10880 -13.67060 -13.54627 -13.40016 -12.95795 -12.84266 -12.80402 -12.71641 -12.46921 -12.43269 -12.24194 -11.93190 -11.67736 -11.48285 -11.45680 -11.26304 -11.22973 -10.94244 -10.45194 -9.19771 -8.10185 -6.20840 1.19897 1.41551 1.42686 1.53071 1.82090 2.45098 3.14765 3.21970 3.54658 3.83300 3.86251 3.96205 3.99430 4.09251 4.12358 4.29422 4.33063 4.46613 4.64292 4.70031 4.79337 4.82745 4.90269 4.91132 4.92836 5.04471 5.07450 5.12327 5.16138 5.26608 5.33659 5.53903 5.61390 5.87333 6.00135 6.04838 6.33186 6.52092 6.84587 6.98317 7.46417 9.00315 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.020592 B = 0.007152 C = 0.006066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.430748 B = 3913.938726 C = 4614.787600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.050 3.950 3 O -0.340 6.340 4 C 0.486 3.514 5 O -0.545 6.545 6 C 0.132 3.868 7 C -0.093 4.093 8 C 0.043 3.957 9 C -0.547 4.547 10 H 0.056 0.944 11 C 0.004 3.996 12 N -0.924 5.924 13 Si 0.957 3.043 14 H -0.270 1.270 15 H -0.285 1.285 16 H -0.267 1.267 17 C -0.133 4.133 18 C -0.122 4.122 19 C -0.150 4.150 20 C 0.052 3.948 21 N -0.669 5.669 22 H 0.046 0.954 23 H 0.072 0.928 24 H 0.106 0.894 25 H 0.077 0.923 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.084 0.916 29 H 0.016 0.984 30 H -0.015 1.015 31 H 0.260 0.740 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.042 0.958 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.049 0.951 39 H 0.097 0.903 40 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.673 -2.182 -13.433 14.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 O -0.256 6.256 4 C 0.331 3.669 5 O -0.436 6.436 6 C 0.040 3.960 7 C -0.131 4.131 8 C 0.006 3.994 9 C -0.585 4.585 10 H 0.074 0.926 11 C -0.194 4.194 12 N -0.564 5.564 13 Si 0.782 3.218 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.192 1.192 17 C -0.172 4.172 18 C -0.160 4.160 19 C -0.189 4.189 20 C -0.077 4.077 21 N -0.303 5.303 22 H 0.065 0.935 23 H 0.091 0.909 24 H 0.124 0.876 25 H 0.096 0.904 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.103 0.897 29 H 0.034 0.966 30 H 0.003 0.997 31 H 0.069 0.931 32 H 0.118 0.882 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.068 0.932 39 H 0.115 0.885 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.064 -2.797 -13.174 14.388 hybrid contribution 0.588 0.013 0.910 1.083 sum 5.652 -2.784 -12.265 13.788 Atomic orbital electron populations 1.21749 0.90983 1.04012 1.03041 1.23203 0.97081 0.80339 1.01724 1.86766 1.24125 1.32244 1.82418 1.23860 0.80693 0.92434 0.69898 1.90551 1.61191 1.43697 1.48144 1.20929 0.91729 0.86605 0.96769 1.21625 0.99725 1.00992 0.90755 1.18822 0.91625 0.95334 0.93667 1.21766 0.93416 1.43479 0.99883 0.92606 1.25874 0.95181 0.95845 1.02520 1.70136 0.98660 1.49263 1.38340 0.85581 0.77803 0.78734 0.79704 1.19585 1.21021 1.19188 1.22161 0.94290 1.03615 0.97130 1.21625 1.01196 0.98781 0.94400 1.22256 0.95770 1.00901 0.99941 1.22165 0.97034 1.00848 0.87663 1.60384 1.52381 1.05487 1.12008 0.93501 0.90883 0.87596 0.90429 0.93022 0.93392 0.89722 0.96582 0.99685 0.93101 0.88220 0.91547 0.89633 0.93918 0.89877 0.89864 0.93239 0.88477 0.81959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.03 10.29 71.98 0.74 -3.29 16 2 C 0.05 1.71 6.19 71.98 0.45 2.15 16 3 O -0.34 -14.07 7.84 -51.38 -0.40 -14.47 16 4 C 0.49 19.63 4.03 71.24 0.29 19.92 16 5 O -0.55 -23.02 14.79 21.96 0.32 -22.69 16 6 C 0.13 4.67 0.60 2.80 0.00 4.67 16 7 C -0.09 -3.89 4.33 30.59 0.13 -3.76 16 8 C 0.04 2.28 4.41 29.85 0.13 2.41 16 9 C -0.55 -31.65 9.11 25.60 0.23 -31.41 16 10 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 11 C 0.00 0.23 5.46 84.66 0.46 0.69 16 12 N -0.92 -56.97 13.29 21.45 0.28 -56.68 16 13 Si 0.96 44.98 29.54 68.60 2.03 47.00 16 14 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 15 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 16 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 17 C -0.13 -3.71 4.52 30.65 0.14 -3.57 16 18 C -0.12 -2.96 5.72 30.67 0.18 -2.78 16 19 C -0.15 -3.01 6.08 30.64 0.19 -2.82 16 20 C 0.05 1.34 6.24 86.32 0.54 1.88 16 21 N -0.67 -21.28 5.32 -474.01 -2.52 -23.80 16 22 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.08 2.29 8.13 -2.39 -0.02 2.27 16 26 H 0.05 1.86 8.13 -2.39 -0.02 1.84 16 27 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.08 3.18 8.14 -2.38 -0.02 3.16 16 29 H 0.02 0.91 7.60 -2.38 -0.02 0.89 16 30 H -0.02 -0.91 6.40 -2.39 -0.02 -0.93 16 31 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 32 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.07 2.02 7.84 -2.39 -0.02 2.00 16 34 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.04 1.24 6.58 -2.39 -0.02 1.23 16 36 H 0.08 1.40 8.14 -2.38 -0.02 1.39 16 37 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.05 1.47 6.46 -2.39 -0.02 1.46 16 39 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.36 9.92 8.79 -89.70 -0.79 9.13 16 Total: -1.00 -70.27 316.50 3.41 -66.86 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.22 Total: 19.71 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 3.47 Total: -15.92 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -2.24 Total: -80.49 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -0.08 Total: -37.16 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -70.27 3.41 -66.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722708727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.554 kcal (2) G-P(sol) polarization free energy of solvation -70.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds