Wall clock time and date at job start Mon Mar 30 2020 05:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34229 * 117.00045 * 2 1 4 4 O 1.20826 * 120.00017 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00316 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.46389 * 84.99612 * 5 3 2 7 7 C 1.53000 * 109.47060 * 300.00487 * 6 5 3 8 8 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47291 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99920 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00428 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99563 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00432 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47282 * 89.99593 * 13 11 9 15 15 H 1.48498 * 109.47211 * 210.00040 * 13 11 9 16 16 H 1.48506 * 109.46856 * 330.00220 * 13 11 9 17 17 C 1.53036 * 109.46287 * 204.97909 * 5 3 2 18 18 C 1.53100 * 109.28907 * 179.19013 * 17 5 3 19 19 C 1.53113 * 109.15452 * 302.33894 * 18 17 5 20 20 C 1.53033 * 109.28172 * 57.65603 * 19 18 17 21 21 N 1.46847 * 109.45686 * 325.01843 * 5 3 2 22 22 H 1.09005 * 109.47324 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47326 * 300.00177 * 1 2 3 24 24 H 1.09007 * 109.47292 * 60.00367 * 1 2 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 6 5 3 26 26 H 1.09001 * 109.46832 * 60.00359 * 6 5 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 7 6 5 28 28 H 1.08992 * 109.47399 * 59.99823 * 7 6 5 29 29 H 1.09001 * 109.47109 * 299.99380 * 8 7 6 30 30 H 1.09002 * 109.47508 * 59.99571 * 8 7 6 31 31 H 0.97000 * 119.99425 * 180.02562 * 12 11 9 32 32 H 1.09000 * 109.50117 * 299.12515 * 17 5 3 33 33 H 1.09002 * 109.50641 * 59.24074 * 17 5 3 34 34 H 1.08995 * 109.52566 * 182.43215 * 18 17 5 35 35 H 1.09005 * 109.57493 * 62.27267 * 18 17 5 36 36 H 1.08996 * 109.50235 * 297.71156 * 19 18 17 37 37 H 1.09003 * 109.50186 * 177.59296 * 19 18 17 38 38 H 1.09003 * 109.46892 * 180.80471 * 20 19 18 39 39 H 1.08995 * 109.45709 * 60.82571 * 20 19 18 40 40 H 1.00900 * 111.00413 * 302.34611 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0814 1.1763 -1.4378 7 6 3.6402 -0.1559 -2.0474 8 6 4.1559 -0.2547 -3.4845 9 6 3.7218 -1.5671 -4.0848 10 1 3.1370 -2.2614 -3.4997 11 6 4.0713 -1.8815 -5.3810 12 7 4.7830 -1.0357 -6.0937 13 14 3.5326 -3.5079 -6.1253 14 1 2.2134 -3.3374 -6.7856 15 1 4.5348 -3.9493 -7.1283 16 1 3.4214 -4.5300 -5.0537 17 6 4.0073 2.6077 0.6088 18 6 5.5367 2.6751 0.6248 19 6 6.0838 1.4841 1.4164 20 6 5.5830 0.1838 0.7837 21 7 4.1145 0.1675 0.7928 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8901 25 1 5.1700 1.2329 -1.4384 26 1 3.6742 1.9980 -2.0269 27 1 4.0474 -0.9776 -1.4584 28 1 2.5518 -0.2129 -2.0469 29 1 3.7490 0.5670 -4.0739 30 1 5.2444 -0.1979 -3.4847 31 1 5.0285 -1.2568 -7.0057 32 1 3.6132 3.4293 0.0108 33 1 3.6289 2.6847 1.6282 34 1 5.8555 3.6040 1.0975 35 1 5.9146 2.6379 -0.3970 36 1 5.7382 1.5434 2.4484 37 1 7.1735 1.5029 1.3953 38 1 5.9591 -0.6659 1.3535 39 1 5.9404 0.1188 -0.2439 40 1 3.7586 0.1880 1.7367 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722751860.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:45 Heat of formation + Delta-G solvation = -105.737631 kcal Electronic energy + Delta-G solvation = -20162.898920 eV Core-core repulsion = 17169.836253 eV Total energy + Delta-G solvation = -2993.062667 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.86434 -38.78397 -36.22203 -34.28192 -32.52829 -31.71227 -30.74745 -27.63636 -27.17485 -24.32320 -23.42007 -22.90977 -20.87898 -20.13857 -18.88168 -17.66991 -16.73310 -16.40826 -15.99552 -15.02666 -14.79224 -14.51413 -14.34113 -14.03667 -13.56252 -13.25118 -13.03524 -12.79699 -12.38975 -12.05018 -11.89059 -11.77664 -11.53722 -11.32463 -11.17692 -10.89706 -10.78243 -10.63189 -10.50469 -10.42461 -10.31909 -9.97074 -9.49782 -9.15799 -8.96662 -8.30144 -8.24225 -5.92298 -3.93297 2.37455 2.91670 3.36779 3.42665 3.46932 4.10035 4.52252 4.67756 4.78256 4.84203 4.99370 5.13262 5.18937 5.25583 5.34821 5.43528 5.45917 5.55095 5.67624 5.73599 5.85879 5.89440 5.91482 5.99354 6.05206 6.11846 6.26323 6.51610 6.57496 6.86226 6.96709 7.09052 7.27686 7.40443 7.79156 7.93998 7.99645 8.09974 8.54098 9.14350 9.70181 11.19268 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.020301 B = 0.006148 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.933720 B = 4552.913816 C = 5308.586561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.329 6.329 3 C 0.482 3.518 4 O -0.519 6.519 5 C 0.129 3.871 6 C -0.109 4.109 7 C -0.104 4.104 8 C 0.020 3.980 9 C -0.513 4.513 10 H 0.055 0.945 11 C 0.054 3.946 12 N -0.898 5.898 13 Si 0.890 3.110 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.273 1.273 17 C -0.135 4.135 18 C -0.120 4.120 19 C -0.159 4.159 20 C 0.053 3.947 21 N -0.657 5.657 22 H 0.100 0.900 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.080 0.920 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.046 0.954 29 H 0.010 0.990 30 H 0.013 0.987 31 H 0.259 0.741 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.009 5.144 16.389 17.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.244 6.244 3 C 0.325 3.675 4 O -0.407 6.407 5 C 0.037 3.963 6 C -0.146 4.146 7 C -0.141 4.141 8 C -0.017 4.017 9 C -0.552 4.552 10 H 0.074 0.926 11 C -0.146 4.146 12 N -0.538 5.538 13 Si 0.718 3.282 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.198 1.198 17 C -0.175 4.175 18 C -0.158 4.158 19 C -0.198 4.198 20 C -0.076 4.076 21 N -0.287 5.287 22 H 0.118 0.882 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.029 0.971 30 H 0.032 0.968 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.228 4.970 15.694 16.508 hybrid contribution -0.363 0.044 0.062 0.371 sum -1.591 5.014 15.755 16.610 Atomic orbital electron populations 1.23259 0.77450 1.03608 1.01965 1.86703 1.22215 1.32572 1.82863 1.23570 0.91394 0.81342 0.71228 1.90629 1.66929 1.36760 1.46353 1.20916 0.86357 0.90708 0.98352 1.21883 1.01564 1.01353 0.89815 1.21620 0.99969 0.93968 0.98587 1.19112 0.96112 0.96682 0.89745 1.21285 1.33106 1.03098 0.97679 0.92633 1.25027 0.95349 0.96876 0.97332 1.69974 1.38474 1.35755 1.09631 0.86631 0.78277 0.84315 0.79007 1.20792 1.21326 1.19835 1.22114 0.96647 0.97503 1.01204 1.21609 0.94382 0.98249 1.01547 1.22295 1.01361 0.96738 0.99406 1.22156 0.86732 0.95974 1.02782 1.60501 1.07632 1.43591 1.16996 0.88152 0.92547 0.91981 0.90194 0.91695 0.91500 0.93480 0.97131 0.96843 0.93171 0.90116 0.91940 0.91703 0.90724 0.92280 0.91194 0.90235 0.89273 0.84439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.46 16 2 O -0.33 -5.31 8.96 -39.26 -0.35 -5.66 16 3 C 0.48 7.98 6.00 36.01 0.22 8.20 16 4 O -0.52 -9.40 15.86 -18.75 -0.30 -9.70 16 5 C 0.13 1.91 0.59 -132.76 -0.08 1.83 16 6 C -0.11 -1.88 3.51 -26.73 -0.09 -1.98 16 7 C -0.10 -2.21 4.59 -26.73 -0.12 -2.33 16 8 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 9 C -0.51 -14.89 9.11 -34.44 -0.31 -15.20 16 10 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 11 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 12 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 13 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 17 C -0.14 -1.71 4.39 -26.66 -0.12 -1.82 16 18 C -0.12 -1.30 5.69 -26.62 -0.15 -1.45 16 19 C -0.16 -1.55 6.08 -26.66 -0.16 -1.71 16 20 C 0.05 0.61 6.26 -3.83 -0.02 0.59 16 21 N -0.66 -8.67 5.30 -101.17 -0.54 -9.21 16 22 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.08 1.31 4.80 -51.93 -0.25 1.06 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.07 1.44 7.60 -51.93 -0.39 1.04 16 28 H 0.05 1.04 6.40 -51.93 -0.33 0.71 16 29 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.08 1.09 7.90 -51.93 -0.41 0.68 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.86 6.56 -51.93 -0.34 0.52 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.09 1.21 6.19 -51.93 -0.32 0.89 16 40 H 0.34 3.88 8.79 -39.29 -0.35 3.53 16 LS Contribution 315.31 15.07 4.75 4.75 Total: -1.00 -32.35 315.31 -7.32 -39.67 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -6.59 Total: 0.34 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -0.02 Total: -10.52 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.20 Total: -35.95 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.65 Total: -15.35 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.35 -7.32 -39.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722751860.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.069 kcal (2) G-P(sol) polarization free energy of solvation -32.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds