Wall clock time and date at job start Mon Mar 30 2020 03:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46893 * 109.47137 * 2 1 4 4 C 1.46902 * 110.99839 * 199.75993 * 3 2 1 5 5 C 1.50700 * 109.47146 * 66.04901 * 4 3 2 6 6 H 1.08001 * 119.99948 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99928 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99997 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99911 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47003 * 90.00501 * 9 7 5 11 11 H 1.48498 * 109.47311 * 210.00340 * 9 7 5 12 12 H 1.48505 * 109.47524 * 330.00999 * 9 7 5 13 13 C 1.46905 * 111.00026 * 75.80852 * 3 2 1 14 14 C 1.52998 * 109.47192 * 199.78783 * 13 3 2 15 15 H 1.09003 * 110.04158 * 301.87158 * 14 13 3 16 16 C 1.55999 * 110.06187 * 180.40676 * 14 13 3 17 17 C 1.51431 * 102.13285 * 246.41515 * 16 14 13 18 18 H 1.08998 * 111.05217 * 85.18256 * 17 16 14 19 19 C 1.50965 * 123.54602 * 220.99598 * 17 16 14 20 20 O 1.45349 * 105.46604 * 140.64481 * 19 17 16 21 21 C 1.45960 * 109.10523 * 353.04523 * 20 19 17 22 22 C 1.50145 * 102.93971 * 335.09359 * 21 20 19 23 23 H 1.09000 * 108.57631 * 292.71766 * 22 21 20 24 24 O 1.38899 * 131.26012 * 157.27826 * 22 21 20 25 25 H 1.09003 * 109.47276 * 174.84972 * 1 2 3 26 26 H 1.08998 * 109.47048 * 294.84983 * 1 2 3 27 27 H 1.08999 * 109.46972 * 54.85003 * 1 2 3 28 28 H 1.09001 * 109.47133 * 239.99873 * 2 1 3 29 29 H 1.09001 * 109.47047 * 120.00026 * 2 1 3 30 30 H 1.09006 * 109.46735 * 186.04409 * 4 3 2 31 31 H 1.08995 * 109.47014 * 306.04372 * 4 3 2 32 32 H 0.97006 * 119.99598 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.46958 * 79.78804 * 13 3 2 34 34 H 1.08999 * 109.47099 * 319.78819 * 13 3 2 35 35 H 1.09004 * 110.86907 * 128.25127 * 16 14 13 36 36 H 1.09001 * 111.04554 * 4.65405 * 16 14 13 37 37 H 1.09000 * 110.24904 * 21.64887 * 19 17 16 38 38 H 1.09001 * 110.32029 * 259.68148 * 19 17 16 39 39 H 1.08995 * 110.75056 * 93.50370 * 21 20 19 40 40 H 1.09002 * 110.75352 * 216.68015 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4121 1.4510 -0.4637 5 6 3.4782 1.0474 -1.9141 6 1 2.5762 0.7692 -2.4389 7 6 4.6902 1.0333 -2.5711 8 7 5.7887 1.3716 -1.9320 9 14 4.7723 0.5323 -4.3688 10 1 4.6035 1.7334 -5.2256 11 1 6.0894 -0.0940 -4.6485 12 1 3.6892 -0.4406 -4.6616 13 6 1.8782 1.9934 1.3296 14 6 1.9175 3.5173 1.1999 15 1 2.8512 3.8284 0.7313 16 6 1.7786 4.1778 2.6063 17 6 0.4367 4.8717 2.5009 18 1 -0.3776 4.1878 2.7403 19 6 0.1655 6.2514 3.0505 20 8 -0.6811 6.9019 2.0643 21 6 -0.7892 6.0449 0.8877 22 6 0.4652 5.2224 0.9544 23 1 1.3195 5.8777 0.7847 24 8 0.7788 3.9843 0.4085 25 1 -0.3634 -1.0235 -0.0923 26 1 -0.3633 0.4319 0.9325 27 1 -0.3633 0.5916 -0.8403 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.7840 2.4696 -0.3527 31 1 4.0253 0.7735 0.1304 32 1 6.6415 1.3613 -2.3942 33 1 2.6958 1.6619 1.9697 34 1 0.9275 1.6905 1.7685 35 1 2.5770 4.9001 2.7767 36 1 1.7650 3.4238 3.3933 37 1 1.0994 6.8012 3.1673 38 1 -0.3533 6.1827 4.0066 39 1 -1.6719 5.4089 0.9529 40 1 -0.8116 6.6418 -0.0241 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724645314.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:49 Heat of formation + Delta-G solvation = -61.290073 kcal Electronic energy + Delta-G solvation = -19898.090097 eV Core-core repulsion = 16906.954821 eV Total energy + Delta-G solvation = -2991.135276 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.95761 -37.77704 -36.47273 -32.69403 -32.47316 -30.95786 -29.56105 -28.61376 -26.86192 -24.72648 -22.47703 -21.83496 -21.56056 -20.52173 -19.76029 -17.28779 -16.54899 -16.11605 -15.71452 -15.16492 -14.91321 -14.56309 -14.36675 -13.88490 -13.68727 -13.53549 -12.89209 -12.51968 -12.46986 -12.10037 -11.88383 -11.79752 -11.59875 -11.27227 -11.02507 -10.80956 -10.68749 -10.66372 -10.46258 -10.23868 -10.05588 -9.77547 -9.71766 -9.30353 -9.10256 -8.41941 -7.18473 -6.01832 -4.02059 3.22029 3.33614 3.39371 3.43294 3.65485 4.36043 4.43654 4.60232 4.66958 4.88103 5.08016 5.11918 5.27908 5.30490 5.34117 5.47508 5.57819 5.60603 5.64498 5.72146 5.77120 5.85243 5.88340 6.04467 6.08506 6.15022 6.16441 6.33691 6.45948 6.47855 6.76056 6.85073 7.18197 7.30095 7.35012 7.83837 8.11409 8.24102 8.57757 9.05943 9.61972 11.09234 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.025357 B = 0.005232 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.972585 B = 5350.529528 C = 5680.356002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.057 3.943 3 N -0.529 5.529 4 C 0.191 3.809 5 C -0.503 4.503 6 H 0.064 0.936 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.058 3.942 14 C 0.089 3.911 15 H 0.084 0.916 16 C -0.131 4.131 17 C -0.187 4.187 18 H 0.094 0.906 19 C 0.066 3.934 20 O -0.383 6.383 21 C 0.077 3.923 22 C 0.032 3.968 23 H 0.056 0.944 24 O -0.318 6.318 25 H 0.045 0.955 26 H 0.041 0.959 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.015 0.985 30 H 0.029 0.971 31 H -0.011 1.011 32 H 0.260 0.740 33 H 0.040 0.960 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.080 5.752 10.140 15.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.071 4.071 3 N -0.253 5.253 4 C 0.066 3.934 5 C -0.542 4.542 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.541 5.541 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.198 1.198 13 C -0.071 4.071 14 C 0.032 3.968 15 H 0.102 0.898 16 C -0.169 4.169 17 C -0.206 4.206 18 H 0.112 0.888 19 C -0.010 4.010 20 O -0.303 6.303 21 C 0.001 3.999 22 C -0.028 4.028 23 H 0.074 0.926 24 O -0.236 6.236 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.104 0.896 29 H 0.033 0.967 30 H 0.047 0.953 31 H 0.007 0.993 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.354 6.111 9.628 15.403 hybrid contribution 1.007 -0.813 -0.206 1.311 sum -9.347 5.299 9.421 14.290 Atomic orbital electron populations 1.21769 0.96581 1.00018 1.01497 1.21958 0.94300 0.90120 1.00739 1.62063 1.25186 1.16774 1.21272 1.19780 0.81493 0.96609 0.95512 1.21164 0.93274 1.44331 0.95405 0.91794 1.24980 0.95632 0.95650 0.98374 1.69959 0.98429 1.49081 1.36601 0.86507 0.77171 0.78739 0.85055 1.20642 1.21388 1.19842 1.22161 1.00257 0.92149 0.92533 1.23894 0.89657 0.95134 0.88075 0.89801 1.22357 0.95950 1.00191 0.98398 1.23665 1.00013 0.97520 0.99394 0.88784 1.22309 0.95158 0.91687 0.91856 1.89327 1.70510 1.43776 1.26706 1.22225 0.95694 0.92778 0.89187 1.22987 0.98676 0.90106 0.91056 0.92618 1.88533 1.50004 1.30098 1.54923 0.93623 0.94026 0.91994 0.89598 0.96660 0.95263 0.99338 0.92996 0.94158 0.91442 0.90361 0.89958 0.91138 0.90397 0.90842 0.88369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.96 37.16 0.37 -1.95 16 2 C 0.06 1.12 5.51 -3.83 -0.02 1.10 16 3 N -0.53 -11.45 4.30 -236.07 -1.02 -12.47 16 4 C 0.19 4.95 4.55 -4.97 -0.02 4.93 16 5 C -0.50 -14.18 8.23 -34.44 -0.28 -14.47 16 6 H 0.06 1.80 7.31 -52.49 -0.38 1.42 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 9 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.06 1.03 4.36 -3.82 -0.02 1.01 16 14 C 0.09 1.49 3.40 -25.13 -0.09 1.41 16 15 H 0.08 1.58 6.78 -51.93 -0.35 1.23 16 16 C -0.13 -1.61 6.41 -25.92 -0.17 -1.78 16 17 C -0.19 -2.23 3.35 -89.34 -0.30 -2.53 16 18 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 19 C 0.07 0.71 7.57 36.14 0.27 0.98 16 20 O -0.38 -4.89 11.58 -35.23 -0.41 -5.30 16 21 C 0.08 0.94 7.62 35.74 0.27 1.21 16 22 C 0.03 0.46 3.76 -25.05 -0.09 0.36 16 23 H 0.06 0.82 7.89 -51.93 -0.41 0.41 16 24 O -0.32 -5.69 11.11 -29.59 -0.33 -6.02 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.63 6.90 -51.93 -0.36 0.27 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.09 1.87 6.58 -51.93 -0.34 1.53 16 29 H 0.02 0.28 8.00 -51.93 -0.42 -0.13 16 30 H 0.03 0.80 6.63 -51.93 -0.34 0.46 16 31 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.04 0.70 8.00 -51.93 -0.42 0.29 16 34 H 0.07 1.09 6.56 -51.93 -0.34 0.75 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.90 7.77 -51.93 -0.40 0.50 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 315.30 15.07 4.75 4.75 Total: -1.00 -30.72 315.30 -8.16 -38.88 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -6.70 Total: -2.37 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -0.17 Total: -8.27 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: -0.28 Total: -38.46 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -0.74 Total: -11.32 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.72 -8.16 -38.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724645314.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.408 kcal (2) G-P(sol) polarization free energy of solvation -30.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds