Wall clock time and date at job start Mon Mar 30 2020 05:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00414 * 2 1 4 4 H 1.48501 * 109.46766 * 269.99469 * 3 2 1 5 5 H 1.48494 * 109.46839 * 29.99523 * 3 2 1 6 6 H 1.48494 * 109.46938 * 149.99578 * 3 2 1 7 7 C 1.37885 * 119.99370 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99337 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00034 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.46655 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47028 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.47415 * 179.97438 * 11 10 9 13 13 C 1.37485 * 119.99958 * 180.02562 * 12 11 10 14 14 N 1.30342 * 120.00160 * 359.97438 * 13 12 11 15 15 N 1.37482 * 119.99686 * 180.02562 * 13 12 11 16 16 C 1.46496 * 120.00003 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.47241 * 179.97438 * 16 15 13 18 18 H 1.09007 * 109.82288 * 305.69450 * 17 16 15 19 19 C 1.54384 * 109.83035 * 184.81451 * 17 16 15 20 20 C 1.55453 * 102.18665 * 219.18051 * 19 17 16 21 21 C 1.54942 * 100.98731 * 34.03654 * 20 19 17 22 22 O 1.43233 * 109.83518 * 66.58257 * 17 16 15 23 23 H 0.97003 * 119.99223 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47542 * 59.99541 * 9 7 2 25 25 H 1.08998 * 109.46743 * 299.99400 * 9 7 2 26 26 H 1.08997 * 109.48156 * 59.99761 * 10 9 7 27 27 H 1.09003 * 109.47517 * 299.99490 * 10 9 7 28 28 H 1.09002 * 109.46926 * 59.99969 * 11 10 9 29 29 H 1.08992 * 109.47494 * 299.99963 * 11 10 9 30 30 H 0.96996 * 119.99617 * 0.02562 * 12 11 10 31 31 H 0.97001 * 119.99703 * 179.97438 * 14 13 12 32 32 H 0.97005 * 120.00191 * 359.97438 * 15 13 12 33 33 H 1.09004 * 109.47001 * 299.99931 * 16 15 13 34 34 H 1.08994 * 109.47269 * 59.99524 * 16 15 13 35 35 H 1.09005 * 110.84853 * 337.31845 * 19 17 16 36 36 H 1.09002 * 110.84961 * 100.93350 * 19 17 16 37 37 H 1.09007 * 111.05502 * 276.12117 * 20 19 17 38 38 H 1.08989 * 111.18737 * 152.00907 * 20 19 17 39 39 H 1.09000 * 110.30999 * 204.69316 * 21 20 19 40 40 H 1.08997 * 110.39403 * 82.56635 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6621 0.0005 11 6 1.4799 -4.9871 0.0012 12 7 2.4319 -6.1007 0.0006 13 6 1.9735 -7.3969 0.0004 14 7 0.6920 -7.6350 0.0014 15 7 2.8668 -8.4419 0.0004 16 6 2.3784 -9.8231 -0.0003 17 6 3.5684 -10.7848 -0.0008 18 1 4.2319 -10.5514 -0.8336 19 6 3.0660 -12.2395 -0.1235 20 6 4.0206 -12.9987 0.8403 21 6 4.2462 -11.9276 1.9370 22 8 4.2830 -10.6745 1.2356 23 1 -0.4849 0.8401 -0.0004 24 1 0.6244 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 2.8718 -3.6045 0.8904 27 1 2.8717 -3.6045 -0.8895 28 1 0.8530 -5.0450 -0.8886 29 1 0.8536 -5.0446 0.8913 30 1 3.3855 -5.9235 0.0002 31 1 0.3686 -8.5495 0.0009 32 1 3.8205 -8.2647 0.0001 33 1 1.7725 -9.9946 0.8895 34 1 1.7732 -9.9940 -0.8905 35 1 2.0317 -12.3222 0.2106 36 1 3.1749 -12.6027 -1.1454 37 1 4.9563 -13.2551 0.3432 38 1 3.5409 -13.8868 1.2514 39 1 5.1928 -12.1029 2.4481 40 1 3.4235 -11.9369 2.6519 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849003159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:28 Heat of formation + Delta-G solvation = -55.790202 kcal Electronic energy + Delta-G solvation = -18197.539805 eV Core-core repulsion = 15238.935772 eV Total energy + Delta-G solvation = -2958.604033 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.67132 -39.34578 -36.83299 -35.18683 -33.50252 -33.03330 -31.97588 -30.62706 -28.40514 -26.36851 -24.62411 -22.69897 -22.24054 -22.13377 -21.12219 -18.82166 -18.42957 -18.00224 -17.26633 -16.80433 -16.47931 -16.31506 -15.73380 -15.37879 -15.27407 -14.86319 -14.25603 -14.22889 -13.87729 -13.65041 -13.57535 -12.87094 -12.69241 -12.50378 -12.47981 -12.35517 -12.22884 -12.09215 -11.73482 -11.53617 -11.44623 -11.15249 -10.56777 -10.53061 -10.27369 -9.58922 -8.97854 -8.17194 -6.28589 1.42287 1.44202 1.55141 1.85409 2.17987 2.43671 2.82053 3.16064 3.20269 3.51284 3.69699 3.94515 4.15137 4.17335 4.29726 4.34243 4.39870 4.48765 4.61677 4.64191 4.76319 4.80892 4.90950 4.93883 5.03508 5.07077 5.22100 5.23025 5.24763 5.53207 5.58551 5.76002 5.87468 6.03878 6.11586 6.26182 6.49586 6.88516 7.13615 7.40478 7.97742 8.95017 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.059390 B = 0.002651 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.347679 B =10558.643712 C =10845.408606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.541 4.541 8 H 0.065 0.935 9 C 0.026 3.974 10 C -0.103 4.103 11 C 0.169 3.831 12 N -0.720 5.720 13 C 0.632 3.368 14 N -0.867 5.867 15 N -0.762 5.762 16 C 0.123 3.877 17 C 0.074 3.926 18 H 0.094 0.906 19 C -0.145 4.145 20 C -0.149 4.149 21 C 0.039 3.961 22 O -0.400 6.400 23 H 0.263 0.737 24 H -0.008 1.008 25 H -0.008 1.008 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.041 0.959 30 H 0.411 0.589 31 H 0.337 0.663 32 H 0.399 0.601 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.926 -28.322 0.128 30.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.579 4.579 8 H 0.083 0.917 9 C -0.012 4.012 10 C -0.141 4.141 11 C 0.044 3.956 12 N -0.364 5.364 13 C 0.264 3.736 14 N -0.519 5.519 15 N -0.408 5.408 16 C -0.002 4.002 17 C 0.016 3.984 18 H 0.112 0.888 19 C -0.183 4.183 20 C -0.186 4.186 21 C -0.037 4.037 22 O -0.320 6.320 23 H 0.072 0.928 24 H 0.011 0.989 25 H 0.010 0.990 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.247 0.753 31 H 0.153 0.847 32 H 0.234 0.766 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.121 0.879 37 H 0.104 0.896 38 H 0.119 0.881 39 H 0.111 0.889 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.827 -27.455 0.209 29.162 hybrid contribution 0.901 0.118 0.057 0.910 sum 10.728 -27.338 0.266 29.368 Atomic orbital electron populations 1.70123 1.07920 1.27756 1.51706 1.26044 0.95788 1.03565 0.94817 0.85398 0.78629 0.78237 0.78470 1.19748 1.20941 1.18545 1.21687 0.93673 0.92097 1.50420 0.91719 1.18915 0.94394 0.92859 0.95036 1.21608 0.98483 0.92429 1.01580 1.20865 0.90818 0.83818 1.00098 1.43877 1.09221 1.01037 1.82239 1.18924 0.85928 0.81852 0.86862 1.69792 1.09467 1.28728 1.43914 1.45297 1.08667 1.03746 1.83065 1.21720 0.97108 0.80016 1.01345 1.22990 0.92280 0.95441 0.87710 0.88832 1.23168 1.00773 0.91850 1.02523 1.23283 1.00635 0.98769 0.95911 1.23583 1.02408 0.82529 0.95197 1.88465 1.74884 1.34884 1.33731 0.92813 0.98921 0.99009 0.91967 0.91768 0.93854 0.94103 0.75258 0.84717 0.76619 0.92938 0.90660 0.89647 0.87885 0.89587 0.88144 0.88916 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.26 13.29 21.45 0.28 -57.98 16 2 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 3 Si 0.97 44.76 29.54 68.60 2.03 46.78 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.54 -31.11 9.11 25.60 0.23 -30.87 16 8 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.03 1.39 4.97 29.85 0.15 1.54 16 10 C -0.10 -4.24 5.27 30.59 0.16 -4.08 16 11 C 0.17 6.45 5.67 86.38 0.49 6.94 16 12 N -0.72 -22.06 5.67 -349.41 -1.98 -24.04 16 13 C 0.63 19.04 8.71 260.54 2.27 21.31 16 14 N -0.87 -29.91 13.21 -58.53 -0.77 -30.69 16 15 N -0.76 -16.78 5.64 -349.42 -1.97 -18.75 16 16 C 0.12 2.15 4.56 86.38 0.39 2.54 16 17 C 0.07 0.97 3.55 31.06 0.11 1.08 16 18 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 19 C -0.15 -1.15 6.56 31.91 0.21 -0.94 16 20 C -0.15 -1.03 7.16 32.10 0.23 -0.80 16 21 C 0.04 0.45 7.78 72.65 0.57 1.02 16 22 O -0.40 -6.99 10.99 -148.98 -1.64 -8.62 16 23 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 24 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 25 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 26 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.41 10.27 8.57 -92.71 -0.79 9.48 16 31 H 0.34 10.19 7.14 -92.71 -0.66 9.53 16 32 H 0.40 7.64 8.57 -92.70 -0.79 6.85 16 33 H 0.05 1.04 7.97 -2.38 -0.02 1.02 16 34 H 0.08 1.22 7.97 -2.39 -0.02 1.20 16 35 H 0.08 0.64 7.85 -2.38 -0.02 0.62 16 36 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 38 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -71.52 330.28 0.01 -71.51 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: -1.21 Total: 23.84 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 5.27 Total: -2.06 kcal Atomic # 7 Polarization: -127.01 SS G_CDS: -4.44 Total: -131.45 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -1.64 Total: -8.62 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -71.52 0.01 -71.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849003159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.724 kcal (2) G-P(sol) polarization free energy of solvation -71.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds