Wall clock time and date at job start Mon Mar 30 2020 04:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42908 * 109.46969 * 2 1 4 4 C 1.42901 * 113.99798 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47562 * 29.99951 * 4 3 2 6 6 C 1.50700 * 109.46799 * 269.99914 * 4 3 2 7 7 O 1.21292 * 120.00520 * 352.92968 * 6 4 3 8 8 N 1.34779 * 119.99992 * 172.93089 * 6 4 3 9 9 C 1.46502 * 119.99573 * 355.48493 * 8 6 4 10 10 C 1.37096 * 120.00608 * 175.48766 * 8 6 4 11 11 H 1.08001 * 119.99676 * 351.70122 * 10 8 6 12 12 C 1.38944 * 120.00443 * 171.42922 * 10 8 6 13 13 N 1.31414 * 119.99977 * 7.68144 * 12 10 8 14 14 Si 1.86797 * 120.00111 * 187.68572 * 12 10 8 15 15 H 1.48497 * 109.47686 * 89.99725 * 14 12 10 16 16 H 1.48500 * 109.47122 * 210.00068 * 14 12 10 17 17 H 1.48503 * 109.47207 * 329.99616 * 14 12 10 18 18 C 1.53000 * 109.46838 * 150.00474 * 4 3 2 19 19 C 1.54268 * 110.03511 * 53.16861 * 18 4 3 20 20 C 1.54893 * 104.19285 * 217.10624 * 19 18 4 21 21 C 1.54886 * 102.74992 * 37.94155 * 20 19 18 22 22 C 1.53874 * 110.02963 * 296.00076 * 18 4 3 23 23 H 1.09005 * 109.47000 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47445 * 299.99876 * 1 2 3 25 25 H 1.09004 * 109.47653 * 60.00089 * 1 2 3 26 26 H 1.08997 * 109.47474 * 240.00635 * 2 1 3 27 27 H 1.08996 * 109.47780 * 120.00246 * 2 1 3 28 28 H 1.09010 * 109.46815 * 245.16609 * 9 8 6 29 29 H 1.08998 * 109.47636 * 5.16487 * 9 8 6 30 30 H 1.08998 * 109.47079 * 125.17383 * 9 8 6 31 31 H 0.96995 * 120.00218 * 180.02562 * 13 12 10 32 32 H 1.09000 * 110.01701 * 174.60979 * 18 4 3 33 33 H 1.08993 * 110.48464 * 335.77983 * 19 18 4 34 34 H 1.08998 * 110.48446 * 98.42676 * 19 18 4 35 35 H 1.09000 * 110.75347 * 279.62508 * 20 19 18 36 36 H 1.09001 * 110.75372 * 156.25378 * 20 19 18 37 37 H 1.09002 * 110.48601 * 203.37369 * 21 20 19 38 38 H 1.09003 * 110.59828 * 80.79098 * 21 20 19 39 39 H 1.09003 * 110.03250 * 238.57308 * 22 18 4 40 40 H 1.08997 * 110.03560 * 359.95053 * 22 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8631 0.6018 -0.5147 6 6 3.9321 1.4997 1.4201 7 8 3.1441 1.5668 2.3397 8 7 5.2561 1.4604 1.6688 9 6 6.2035 1.2798 0.5660 10 6 5.7165 1.5894 2.9537 11 1 5.0342 1.8555 3.7475 12 6 7.0596 1.3722 3.2357 13 7 7.9160 1.1924 2.2553 14 14 7.6478 1.3358 5.0082 15 1 7.5703 -0.0534 5.5272 16 1 9.0533 1.8108 5.0732 17 1 6.7875 2.2212 5.8336 18 6 3.8402 2.7460 -0.7217 19 6 3.0998 3.9535 -0.1104 20 6 2.7914 4.8643 -1.3247 21 6 2.4420 3.8445 -2.4369 22 6 3.4219 2.6767 -2.2009 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 6.7188 0.3262 0.6822 29 1 5.6644 1.2883 -0.3813 30 1 6.9323 2.0902 0.5767 31 1 8.8536 1.0404 2.4522 32 1 4.9179 2.8899 -0.6448 33 1 2.1756 3.6313 0.3692 34 1 3.7402 4.4724 0.6028 35 1 3.6678 5.4509 -1.6000 36 1 1.9411 5.5132 -1.1147 37 1 2.6021 4.2840 -3.4215 38 1 1.4114 3.5042 -2.3352 39 1 4.2965 2.7879 -2.8419 40 1 2.9280 1.7268 -2.4052 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865068549.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:12 Heat of formation + Delta-G solvation = -81.370014 kcal Electronic energy + Delta-G solvation = -20500.281759 eV Core-core repulsion = 17508.275752 eV Total energy + Delta-G solvation = -2992.006008 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.55329 -37.27859 -36.52148 -34.54267 -31.91759 -31.14909 -29.33709 -28.33922 -26.42428 -25.30088 -23.58107 -22.48642 -20.39461 -19.49366 -19.10202 -16.96056 -16.40085 -15.99602 -15.29485 -15.08175 -14.86187 -14.26057 -13.93940 -13.50396 -13.42806 -12.97661 -12.68192 -12.37591 -12.07419 -11.73797 -11.56621 -11.34113 -11.09989 -10.98573 -10.88206 -10.77275 -10.74806 -10.65654 -10.35255 -10.27804 -10.18911 -10.08613 -9.94142 -9.54208 -8.99269 -8.00144 -7.81139 -6.22365 -3.78011 3.17191 3.25664 3.31187 3.85864 4.02837 4.20147 4.83399 4.97080 5.04457 5.07733 5.21481 5.34948 5.47639 5.56607 5.67506 5.69473 5.76325 5.85328 5.87908 5.96432 6.00844 6.05857 6.12561 6.21077 6.24849 6.30591 6.33119 6.35865 6.45989 6.58270 6.71241 6.91209 7.08958 7.40289 7.57408 7.63127 8.11557 8.53238 9.23326 9.48015 10.03065 10.72217 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.022880 B = 0.006887 C = 0.005990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.501065 B = 4064.517831 C = 4673.004416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.058 3.942 3 O -0.354 6.354 4 C 0.093 3.907 5 H 0.065 0.935 6 C 0.421 3.579 7 O -0.581 6.581 8 N -0.449 5.449 9 C 0.111 3.889 10 C -0.297 4.297 11 H 0.102 0.898 12 C 0.026 3.974 13 N -0.890 5.890 14 Si 0.929 3.071 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.270 1.270 18 C -0.087 4.087 19 C -0.112 4.112 20 C -0.123 4.123 21 C -0.118 4.118 22 C -0.114 4.114 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.039 0.961 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.024 0.976 30 H 0.073 0.927 31 H 0.265 0.735 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.556 0.997 -10.027 12.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.019 4.019 3 O -0.272 6.272 4 C 0.031 3.969 5 H 0.083 0.917 6 C 0.209 3.791 7 O -0.465 6.465 8 N -0.169 5.169 9 C -0.033 4.033 10 C -0.425 4.425 11 H 0.120 0.880 12 C -0.175 4.175 13 N -0.531 5.531 14 Si 0.756 3.244 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.195 1.195 18 C -0.106 4.106 19 C -0.150 4.150 20 C -0.161 4.161 21 C -0.155 4.155 22 C -0.152 4.152 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.042 0.958 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.846 1.153 -9.582 11.833 hybrid contribution 0.837 -0.430 0.801 1.235 sum -6.010 0.724 -8.781 10.665 Atomic orbital electron populations 1.21674 0.94200 1.01553 1.02792 1.22430 0.95193 0.84677 0.99624 1.87877 1.19361 1.25331 1.94644 1.21851 0.82180 0.98187 0.94664 0.91674 1.20470 0.82857 0.85197 0.90616 1.90508 1.54834 1.55428 1.45758 1.43744 1.03984 1.61646 1.07569 1.21902 0.91741 1.04097 0.85536 1.19785 0.93448 1.44153 0.85142 0.87988 1.25297 0.95751 0.96804 0.99661 1.70152 1.03385 1.49076 1.30518 0.85879 0.77738 0.78650 0.82166 1.20414 1.20952 1.19468 1.21997 1.00860 0.93714 0.94031 1.22285 1.01263 0.94561 0.96875 1.22482 1.00500 0.97349 0.95741 1.22279 0.99530 0.95862 0.97861 1.22135 0.98678 0.98914 0.95460 0.91705 0.91747 0.92368 0.94288 0.93196 0.91715 0.95753 0.90829 0.92448 0.88979 0.90073 0.91994 0.92016 0.92090 0.92506 0.91668 0.92147 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 10.28 37.15 0.38 -1.55 16 2 C 0.06 0.94 6.46 37.15 0.24 1.18 16 3 O -0.35 -6.78 7.99 -55.04 -0.44 -7.22 16 4 C 0.09 1.82 1.14 -27.88 -0.03 1.79 16 5 H 0.07 1.19 6.94 -51.93 -0.36 0.83 16 6 C 0.42 10.53 6.49 -10.98 -0.07 10.45 16 7 O -0.58 -16.66 16.13 -14.26 -0.23 -16.89 16 8 N -0.45 -11.67 3.03 -122.19 -0.37 -12.04 16 9 C 0.11 2.52 7.70 59.85 0.46 2.98 16 10 C -0.30 -8.42 9.53 -14.94 -0.14 -8.56 16 11 H 0.10 3.05 7.23 -52.49 -0.38 2.67 16 12 C 0.03 0.70 5.45 -17.47 -0.10 0.60 16 13 N -0.89 -23.44 9.49 55.50 0.53 -22.92 16 14 Si 0.93 21.10 29.56 -169.99 -5.02 16.08 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 C -0.09 -1.50 2.30 -89.50 -0.21 -1.71 16 19 C -0.11 -1.97 5.79 -25.07 -0.15 -2.11 16 20 C -0.12 -1.70 6.91 -24.74 -0.17 -1.87 16 21 C -0.12 -1.51 6.83 -25.07 -0.17 -1.68 16 22 C -0.11 -1.59 6.27 -25.61 -0.16 -1.75 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.04 0.55 8.08 -51.93 -0.42 0.13 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.06 1.56 7.09 -51.92 -0.37 1.19 16 29 H 0.02 0.46 4.46 -51.93 -0.23 0.23 16 30 H 0.07 1.76 7.03 -51.93 -0.37 1.40 16 31 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 32 H 0.09 1.65 5.88 -51.93 -0.31 1.34 16 33 H 0.08 1.59 6.96 -51.93 -0.36 1.23 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.86 7.54 -51.93 -0.39 0.47 16 LS Contribution 313.59 15.07 4.73 4.73 Total: -1.00 -30.78 313.59 -7.47 -38.25 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.55 Total: 2.24 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -0.11 Total: -2.22 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.16 Total: -34.96 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.67 Total: -24.12 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.78 -7.47 -38.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865068549.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.119 kcal (2) G-P(sol) polarization free energy of solvation -30.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds