Wall clock time and date at job start Mon Mar 30 2020 04:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42908 * 109.46968 * 2 1 4 4 C 1.42900 * 114.00012 * 180.02562 * 3 2 1 5 5 H 1.09000 * 115.54791 * 4.33104 * 4 3 2 6 6 C 1.53001 * 117.51382 * 218.63222 * 4 3 2 7 7 H 1.08999 * 117.49479 * 145.03466 * 6 4 3 8 8 C 1.52996 * 117.50068 * 0.02562 * 6 4 3 9 9 C 1.52999 * 117.49797 * 150.00158 * 4 3 2 10 10 H 1.08999 * 117.49555 * 0.02562 * 9 4 3 11 11 C 1.50699 * 117.49959 * 215.00150 * 9 4 3 12 12 O 1.21279 * 119.99900 * 291.39233 * 11 9 4 13 13 N 1.34776 * 119.99759 * 111.39150 * 11 9 4 14 14 C 1.46501 * 120.00047 * 359.97438 * 13 11 9 15 15 C 1.46494 * 119.99779 * 180.02562 * 13 11 9 16 16 H 1.08999 * 109.47446 * 359.97438 * 15 13 11 17 17 C 1.53003 * 109.47516 * 120.00005 * 15 13 11 18 18 C 1.50697 * 109.47346 * 240.00159 * 15 13 11 19 19 H 1.08002 * 119.99802 * 334.94952 * 18 15 13 20 20 C 1.37874 * 120.00632 * 154.94753 * 18 15 13 21 21 N 1.31519 * 119.99595 * 6.48968 * 20 18 15 22 22 Si 1.86799 * 120.00459 * 186.48173 * 20 18 15 23 23 H 1.48503 * 109.47361 * 270.00362 * 22 20 18 24 24 H 1.48499 * 109.47105 * 30.00293 * 22 20 18 25 25 H 1.48502 * 109.47197 * 150.00148 * 22 20 18 26 26 H 1.09002 * 109.47381 * 59.99873 * 1 2 3 27 27 H 1.09004 * 109.46667 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46562 * 299.99310 * 1 2 3 29 29 H 1.09008 * 109.46950 * 240.00732 * 2 1 3 30 30 H 1.08989 * 109.47581 * 120.00430 * 2 1 3 31 31 H 1.08989 * 109.47183 * 351.38038 * 8 6 4 32 32 H 1.09005 * 109.46926 * 111.38033 * 8 6 4 33 33 H 1.08996 * 109.46917 * 231.37879 * 8 6 4 34 34 H 1.08994 * 109.46991 * 269.99720 * 14 13 11 35 35 H 1.08995 * 109.46825 * 30.00571 * 14 13 11 36 36 H 1.09003 * 109.46923 * 149.99904 * 14 13 11 37 37 H 1.08991 * 109.47102 * 175.73961 * 17 15 13 38 38 H 1.09002 * 109.46619 * 295.73950 * 17 15 13 39 39 H 1.09004 * 109.46569 * 55.73559 * 17 15 13 40 40 H 0.96994 * 120.00146 * 355.07232 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3474 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9770 0.5198 -0.0752 6 6 4.0521 2.5726 0.8465 7 1 5.0070 2.3641 1.3290 8 6 3.1007 3.4790 1.6301 9 6 4.0420 2.6878 -0.6792 10 1 3.3574 3.4095 -1.1248 11 6 5.3529 2.5043 -1.3996 12 8 6.3637 2.2744 -0.7702 13 7 5.4017 2.5955 -2.7434 14 6 4.1805 2.8726 -3.5037 15 6 6.6759 2.4165 -3.4438 16 1 7.4650 2.2198 -2.7181 17 6 6.5652 1.2356 -4.4103 18 6 7.0050 3.6682 -4.2158 19 1 6.2135 4.3321 -4.5308 20 6 8.3164 3.9660 -4.5198 21 7 9.2673 3.0984 -4.2499 22 14 8.7426 5.6016 -5.3153 23 1 8.6920 5.4616 -6.7928 24 1 7.7654 6.6323 -4.8820 25 1 10.1094 6.0111 -4.9034 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5137 0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8898 31 1 2.0731 3.2706 1.3326 32 1 3.2154 3.2899 2.6975 33 1 3.3358 4.5220 1.4185 34 1 3.6957 1.9327 -3.7674 35 1 3.5031 3.4732 -2.8968 36 1 4.4343 3.4180 -4.4127 37 1 7.4869 1.1494 -4.9856 38 1 6.4024 0.3178 -3.8453 39 1 5.7274 1.3984 -5.0884 40 1 9.0565 2.2806 -3.7729 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906566953.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:12 Heat of formation + Delta-G solvation = -84.080228 kcal Electronic energy + Delta-G solvation = -19605.762061 eV Core-core repulsion = 16613.638530 eV Total energy + Delta-G solvation = -2992.123531 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.29451 -39.45550 -37.49393 -36.44293 -34.94939 -31.80112 -31.52789 -29.46606 -27.71815 -27.01510 -25.17922 -23.77148 -22.68225 -21.61203 -20.08592 -18.85450 -18.54756 -17.55637 -17.07632 -16.58055 -16.37577 -15.74174 -15.49092 -15.06639 -14.84338 -14.25771 -14.06118 -13.94266 -13.52988 -13.41207 -13.30724 -13.27107 -13.11599 -13.05077 -12.91397 -12.60753 -12.53402 -12.16526 -12.09756 -11.96201 -11.74783 -11.16515 -10.92842 -10.81751 -10.56280 -10.15228 -9.38793 -8.66381 -6.41306 1.44263 1.51694 1.61326 1.77480 2.06050 2.51813 2.57347 2.75817 3.16933 3.58883 3.64169 3.80247 3.97534 4.18359 4.22499 4.37663 4.39430 4.43310 4.47354 4.50974 4.58579 4.64471 4.73293 4.75800 4.87692 4.93288 4.93994 5.04294 5.12705 5.13707 5.26398 5.29051 5.41396 5.70135 5.86168 6.13414 6.17698 6.47720 6.69599 7.25983 7.42549 8.70061 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.030332 B = 0.004971 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.904550 B = 5631.825541 C = 5921.542880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.046 3.954 3 O -0.355 6.355 4 C 0.069 3.931 5 H 0.110 0.890 6 C -0.126 4.126 7 H 0.102 0.898 8 C -0.112 4.112 9 C -0.192 4.192 10 H 0.143 0.857 11 C 0.523 3.477 12 O -0.604 6.604 13 N -0.592 5.592 14 C 0.083 3.917 15 C 0.239 3.761 16 H 0.015 0.985 17 C -0.129 4.129 18 C -0.610 4.610 19 H 0.060 0.940 20 C -0.029 4.029 21 N -0.932 5.932 22 Si 1.120 2.880 23 H -0.267 1.267 24 H -0.272 1.272 25 H -0.288 1.288 26 H 0.060 0.940 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.039 0.961 38 H 0.031 0.969 39 H 0.062 0.938 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.153 -3.543 6.995 20.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.030 4.030 3 O -0.274 6.274 4 C 0.010 3.990 5 H 0.127 0.873 6 C -0.145 4.145 7 H 0.120 0.880 8 C -0.169 4.169 9 C -0.213 4.213 10 H 0.160 0.840 11 C 0.312 3.688 12 O -0.487 6.487 13 N -0.321 5.321 14 C -0.059 4.059 15 C 0.137 3.863 16 H 0.033 0.967 17 C -0.188 4.188 18 C -0.649 4.649 19 H 0.078 0.922 20 C -0.228 4.228 21 N -0.569 5.569 22 Si 0.942 3.058 23 H -0.192 1.192 24 H -0.197 1.197 25 H -0.214 1.214 26 H 0.079 0.921 27 H 0.110 0.890 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.081 0.919 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -17.547 -2.648 6.635 18.945 hybrid contribution -0.436 -1.262 0.447 1.408 sum -17.983 -3.909 7.082 19.718 Atomic orbital electron populations 1.21752 0.91851 1.03614 1.03065 1.22833 0.96845 0.82289 1.01020 1.87796 1.17262 1.28545 1.93787 1.22488 0.82586 0.92894 1.01082 0.87269 1.22949 1.01069 1.00300 0.90180 0.87989 1.21218 0.98302 0.97781 0.99555 1.22807 0.96055 1.05421 0.97001 0.83963 1.20278 0.89855 0.76257 0.82425 1.90604 1.38234 1.52611 1.67239 1.48185 1.10635 1.67631 1.05667 1.21837 0.85331 1.01444 0.97335 1.18790 0.82020 0.94912 0.90627 0.96701 1.21942 1.01003 0.96585 0.99252 1.22422 0.95376 1.08435 1.38637 0.92169 1.27320 0.92774 1.05788 0.96951 1.70876 1.36664 1.10941 1.38415 0.82898 0.75747 0.70851 0.76341 1.19183 1.19683 1.21402 0.92075 0.89034 0.91672 0.92940 0.92157 0.90842 0.90498 0.91979 0.91615 0.89641 0.91215 0.94211 0.94985 0.91937 0.93352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.28 71.98 0.74 -1.15 16 2 C 0.05 0.80 6.53 71.98 0.47 1.27 16 3 O -0.36 -8.24 9.32 -148.98 -1.39 -9.62 16 4 C 0.07 1.86 6.11 30.59 0.19 2.05 16 5 H 0.11 3.01 7.93 -2.39 -0.02 2.99 16 6 C -0.13 -3.58 5.92 -10.79 -0.06 -3.65 16 7 H 0.10 3.30 7.67 -2.39 -0.02 3.28 16 8 C -0.11 -2.43 10.14 71.98 0.73 -1.70 16 9 C -0.19 -6.14 4.96 -11.54 -0.06 -6.20 16 10 H 0.14 4.03 6.44 -2.39 -0.02 4.02 16 11 C 0.52 22.93 7.46 87.66 0.65 23.59 16 12 O -0.60 -32.11 15.59 -3.03 -0.05 -32.16 16 13 N -0.59 -26.14 2.75 -826.83 -2.28 -28.42 16 14 C 0.08 2.75 9.20 127.77 1.18 3.92 16 15 C 0.24 12.61 2.26 44.25 0.10 12.71 16 16 H 0.01 0.94 5.74 -2.39 -0.01 0.92 16 17 C -0.13 -6.02 9.12 71.98 0.66 -5.37 16 18 C -0.61 -34.04 8.13 25.60 0.21 -33.83 16 19 H 0.06 3.22 6.66 -2.91 -0.02 3.20 16 20 C -0.03 -1.69 5.45 84.65 0.46 -1.23 16 21 N -0.93 -58.18 13.60 21.45 0.29 -57.89 16 22 Si 1.12 50.45 29.91 68.60 2.05 52.51 16 23 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 25 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 27 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 1.52 6.94 -2.39 -0.02 1.51 16 32 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.09 2.35 5.99 -2.39 -0.01 2.34 16 36 H 0.07 2.44 6.63 -2.39 -0.02 2.42 16 37 H 0.04 1.99 7.75 -2.39 -0.02 1.97 16 38 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 2.59 7.53 -2.38 -0.02 2.57 16 40 H 0.26 16.45 6.35 -92.71 -0.59 15.86 16 Total: -1.00 -72.47 326.95 5.08 -67.38 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 1.19 Total: 17.78 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 5.26 Total: -9.58 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -1.98 Total: -86.30 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -1.44 Total: -41.78 kcal Atomic # 14 Polarization: 50.45 SS G_CDS: 2.05 Total: 52.51 kcal Total: -72.47 5.08 -67.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906566953.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.697 kcal (2) G-P(sol) polarization free energy of solvation -72.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds