Wall clock time and date at job start Mon Mar 30 2020 04:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.42899 * 113.99629 * 180.02562 * 3 2 1 5 5 H 1.09003 * 115.55238 * 4.41450 * 4 3 2 6 6 C 1.53005 * 117.50099 * 218.74916 * 4 3 2 7 7 H 1.08993 * 117.50400 * 145.02002 * 6 4 3 8 8 C 1.53001 * 117.49281 * 359.97438 * 6 4 3 9 9 C 1.53001 * 117.49744 * 150.09042 * 4 3 2 10 10 H 1.09004 * 117.49542 * 214.97703 * 9 4 3 11 11 C 1.50694 * 117.50013 * 359.97438 * 9 4 3 12 12 O 1.21283 * 120.00041 * 68.60539 * 11 9 4 13 13 N 1.34782 * 119.99914 * 248.61095 * 11 9 4 14 14 C 1.46503 * 120.00211 * 359.97438 * 13 11 9 15 15 C 1.46500 * 120.00009 * 179.97438 * 13 11 9 16 16 H 1.09003 * 109.46866 * 0.02562 * 15 13 11 17 17 C 1.52997 * 109.47250 * 119.99925 * 15 13 11 18 18 C 1.50696 * 109.47465 * 239.99985 * 15 13 11 19 19 H 1.08004 * 119.99670 * 359.97438 * 18 15 13 20 20 C 1.37872 * 120.00393 * 179.97438 * 18 15 13 21 21 N 1.31516 * 119.99751 * 359.97438 * 20 18 15 22 22 Si 1.86795 * 120.00347 * 180.02562 * 20 18 15 23 23 H 1.48508 * 109.47301 * 59.99755 * 22 20 18 24 24 H 1.48502 * 109.47353 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47130 * 300.00292 * 22 20 18 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 31 31 H 1.08999 * 109.46946 * 111.39765 * 8 6 4 32 32 H 1.08995 * 109.47265 * 231.39148 * 8 6 4 33 33 H 1.08997 * 109.47643 * 351.39475 * 8 6 4 34 34 H 1.09000 * 109.46958 * 89.99757 * 14 13 11 35 35 H 1.08994 * 109.47121 * 209.99966 * 14 13 11 36 36 H 1.09002 * 109.46736 * 330.00684 * 14 13 11 37 37 H 1.09003 * 109.47011 * 59.99624 * 17 15 13 38 38 H 1.08997 * 109.47777 * 179.97438 * 17 15 13 39 39 H 1.09011 * 109.47066 * 300.00272 * 17 15 13 40 40 H 0.97003 * 120.00024 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9769 0.5199 -0.0766 6 6 4.0519 2.5710 0.8488 7 1 5.0066 2.3617 1.3311 8 6 3.1000 3.4762 1.6332 9 6 4.0418 2.6888 -0.6774 10 1 4.9901 2.5568 -1.1985 11 6 3.0954 3.6870 -1.2929 12 8 2.3782 4.3600 -0.5832 13 7 3.0458 3.8317 -2.6320 14 6 3.9125 3.0190 -3.4892 15 6 2.1254 4.8017 -3.2304 16 1 1.5682 5.3080 -2.4421 17 6 2.9216 5.8319 -4.0338 18 6 1.1649 4.0852 -4.1443 19 1 1.2336 3.0144 -4.2674 20 6 0.1986 4.7966 -4.8232 21 7 0.1146 6.1005 -4.6729 22 14 -0.9924 3.9085 -5.9555 23 1 -1.7649 2.9085 -5.1753 24 1 -1.9254 4.8918 -6.5622 25 1 -0.2334 3.2190 -7.0297 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.2142 3.2856 2.7003 32 1 3.3354 4.5196 1.4235 33 1 2.0725 3.2685 1.3349 34 1 3.3988 2.0945 -3.7529 35 1 4.1499 3.5743 -4.3965 36 1 4.8334 2.7834 -2.9557 37 1 3.4791 5.3258 -4.8220 38 1 2.2368 6.5533 -4.4794 39 1 3.6163 6.3501 -3.3727 40 1 -0.5655 6.6010 -5.1502 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906566954.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:15 Heat of formation + Delta-G solvation = -49.847766 kcal Electronic energy + Delta-G solvation = -20167.814049 eV Core-core repulsion = 17177.174949 eV Total energy + Delta-G solvation = -2990.639101 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.71731 -37.75697 -35.67870 -34.68791 -32.73292 -30.70632 -29.53869 -27.93194 -25.97166 -25.14557 -23.71305 -22.77047 -20.85876 -20.03861 -17.94222 -17.12454 -16.28541 -15.73079 -15.46792 -15.40297 -14.91643 -14.11767 -13.86336 -13.39960 -12.78203 -12.67103 -12.57827 -12.39502 -12.26905 -11.95772 -11.80348 -11.55618 -11.46662 -11.27190 -10.99495 -10.96805 -10.77125 -10.58644 -10.52286 -10.16925 -10.08505 -9.76211 -9.10331 -8.92551 -8.55989 -8.32379 -7.42095 -5.99794 -4.06812 3.28539 3.31758 3.36388 3.38726 3.60426 3.96844 4.29667 4.45752 4.85516 5.00263 5.11112 5.17273 5.30309 5.35454 5.40802 5.42482 5.49739 5.66871 5.82900 5.88166 6.02032 6.05154 6.18844 6.27303 6.29851 6.38888 6.50432 6.83399 6.90275 7.04640 7.14566 7.39843 7.57104 7.63517 7.81124 8.11232 8.29817 8.68868 8.93392 9.26591 9.59564 11.05547 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.019273 B = 0.007280 C = 0.006058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.435516 B = 3845.487089 C = 4620.691885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.059 3.941 3 O -0.335 6.335 4 C 0.045 3.955 5 H 0.111 0.889 6 C -0.130 4.130 7 H 0.108 0.892 8 C -0.107 4.107 9 C -0.192 4.192 10 H 0.121 0.879 11 C 0.542 3.458 12 O -0.540 6.540 13 N -0.593 5.593 14 C 0.091 3.909 15 C 0.260 3.740 16 H 0.063 0.937 17 C -0.147 4.147 18 C -0.520 4.520 19 H 0.057 0.943 20 C 0.063 3.937 21 N -0.890 5.890 22 Si 0.897 3.103 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.278 1.278 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.038 0.962 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.029 0.971 38 H 0.093 0.907 39 H 0.010 0.990 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.031 -11.086 7.322 15.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.253 6.253 4 C -0.015 4.015 5 H 0.129 0.871 6 C -0.149 4.149 7 H 0.126 0.874 8 C -0.164 4.164 9 C -0.214 4.214 10 H 0.139 0.861 11 C 0.328 3.672 12 O -0.418 6.418 13 N -0.324 5.324 14 C -0.053 4.053 15 C 0.160 3.840 16 H 0.081 0.919 17 C -0.205 4.205 18 C -0.558 4.558 19 H 0.075 0.925 20 C -0.139 4.139 21 N -0.528 5.528 22 Si 0.725 3.275 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.203 1.203 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.048 0.952 38 H 0.111 0.889 39 H 0.030 0.970 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.379 -10.385 7.595 14.832 hybrid contribution -0.305 -0.823 -0.963 1.303 sum 7.074 -11.208 6.631 14.820 Atomic orbital electron populations 1.21733 0.93615 1.01850 1.03771 1.22506 0.95854 0.83814 0.99560 1.88046 1.17767 1.25818 1.93693 1.22602 0.83004 0.92720 1.03140 0.87114 1.22819 1.00616 1.00287 0.91160 0.87415 1.21192 1.00248 0.98885 0.96055 1.22997 1.01157 1.00483 0.96742 0.86080 1.19133 0.82779 0.82763 0.82501 1.90626 1.43532 1.47184 1.60467 1.48116 1.39922 1.39702 1.04641 1.21506 0.92708 0.95600 0.95533 1.18877 0.86218 0.85645 0.93274 0.91941 1.22099 0.99164 1.00561 0.98713 1.21287 1.14635 0.94008 1.25919 0.92484 1.24884 0.97263 0.94879 0.96830 1.69874 1.34400 1.05873 1.42686 0.86581 0.80854 0.79354 0.80719 1.20295 1.21206 1.20338 0.91352 0.91854 0.91286 0.93623 0.93436 0.94287 0.91572 0.90350 0.93674 0.91178 0.93178 0.95223 0.88878 0.97045 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 10.28 37.16 0.38 -1.57 16 2 C 0.06 0.77 6.53 37.16 0.24 1.02 16 3 O -0.34 -5.79 8.73 -35.23 -0.31 -6.10 16 4 C 0.04 0.65 6.37 -26.73 -0.17 0.48 16 5 H 0.11 1.20 7.93 -51.93 -0.41 0.79 16 6 C -0.13 -1.87 6.41 -90.58 -0.58 -2.45 16 7 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 8 C -0.11 -1.77 8.38 37.16 0.31 -1.46 16 9 C -0.19 -3.12 5.29 -91.74 -0.49 -3.60 16 10 H 0.12 1.60 6.44 -51.93 -0.33 1.27 16 11 C 0.54 11.87 6.96 -10.99 -0.08 11.79 16 12 O -0.54 -13.72 12.44 5.56 0.07 -13.65 16 13 N -0.59 -13.33 2.75 -175.27 -0.48 -13.81 16 14 C 0.09 1.61 9.51 59.85 0.57 2.18 16 15 C 0.26 6.91 2.63 -69.09 -0.18 6.73 16 16 H 0.06 1.93 6.90 -51.93 -0.36 1.57 16 17 C -0.15 -3.63 8.95 37.16 0.33 -3.30 16 18 C -0.52 -14.55 8.37 -34.44 -0.29 -14.84 16 19 H 0.06 1.58 7.65 -52.48 -0.40 1.18 16 20 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 21 N -0.89 -25.83 11.32 55.43 0.63 -25.20 16 22 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 1.21 7.26 -51.93 -0.38 0.83 16 33 H 0.08 1.55 6.06 -51.93 -0.31 1.23 16 34 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 1.25 6.43 -51.93 -0.33 0.91 16 36 H 0.05 0.70 5.99 -51.93 -0.31 0.39 16 37 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 38 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 39 H 0.01 0.25 8.14 -51.92 -0.42 -0.18 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 320.06 15.07 4.82 4.82 Total: -1.00 -32.59 320.06 -6.77 -39.37 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.44 Total: 1.35 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -0.04 Total: -3.34 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.15 Total: -39.01 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.24 Total: -19.75 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.59 -6.77 -39.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906566954.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.481 kcal (2) G-P(sol) polarization free energy of solvation -32.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds