Wall clock time and date at job start Mon Mar 30 2020 04:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42906 * 109.46843 * 2 1 4 4 C 1.42898 * 113.99579 * 180.02562 * 3 2 1 5 5 H 1.09001 * 115.56724 * 4.31141 * 4 3 2 6 6 C 1.53002 * 117.49842 * 218.62364 * 4 3 2 7 7 H 1.08999 * 117.50189 * 145.01655 * 6 4 3 8 8 C 1.53005 * 117.49706 * 0.02562 * 6 4 3 9 9 C 1.52995 * 60.00073 * 252.51020 * 6 4 3 10 10 H 1.09002 * 117.49808 * 107.51054 * 9 6 4 11 11 C 1.50699 * 117.49878 * 252.50719 * 9 6 4 12 12 O 1.21276 * 120.00403 * 359.97438 * 11 9 6 13 13 N 1.34777 * 119.99614 * 180.02562 * 11 9 6 14 14 C 1.46500 * 119.99746 * 179.97438 * 13 11 9 15 15 C 1.52996 * 109.47368 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47346 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.46931 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00193 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99398 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99350 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00608 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47326 * 270.00340 * 21 19 17 23 23 H 1.48506 * 109.46545 * 30.00090 * 21 19 17 24 24 H 1.48498 * 109.47210 * 149.99801 * 21 19 17 25 25 H 1.08991 * 109.47614 * 59.99759 * 1 2 3 26 26 H 1.09001 * 109.46967 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46902 * 299.98939 * 1 2 3 28 28 H 1.09009 * 109.47171 * 240.00570 * 2 1 3 29 29 H 1.08994 * 109.48107 * 120.00356 * 2 1 3 30 30 H 1.08997 * 109.46996 * 351.37876 * 8 6 4 31 31 H 1.09006 * 109.46900 * 111.37787 * 8 6 4 32 32 H 1.09000 * 109.47378 * 231.37628 * 8 6 4 33 33 H 0.97003 * 120.00723 * 359.97438 * 13 11 9 34 34 H 1.09000 * 109.47175 * 59.99850 * 14 13 11 35 35 H 1.09004 * 109.47042 * 299.99808 * 14 13 11 36 36 H 1.09004 * 109.47368 * 59.99943 * 15 14 13 37 37 H 1.09004 * 109.47108 * 300.00044 * 15 14 13 38 38 H 1.09000 * 109.46986 * 60.00254 * 16 15 14 39 39 H 1.08993 * 109.47662 * 300.00031 * 16 15 14 40 40 H 0.97005 * 119.99661 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9771 0.5199 -0.0749 6 6 4.0517 2.5728 0.8465 7 1 5.0063 2.3645 1.3295 8 6 3.0998 3.4791 1.6298 9 6 4.0419 2.6877 -0.6791 10 1 3.3577 3.4095 -1.1251 11 6 5.3531 2.5043 -1.3991 12 8 6.3639 2.2754 -0.7694 13 7 5.4024 2.5956 -2.7429 14 6 6.6771 2.4178 -3.4428 15 6 6.4572 2.5692 -4.9493 16 6 7.7885 2.3841 -5.6802 17 6 7.5717 2.5326 -7.1642 18 1 6.5834 2.7388 -7.5476 19 6 8.6353 2.4052 -8.0323 20 7 8.4462 2.5353 -9.3272 21 14 10.3447 2.0479 -7.3692 22 1 11.0454 3.3274 -7.0916 23 1 10.2344 1.2615 -6.1143 24 1 11.1131 1.2707 -8.3745 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8898 30 1 2.0722 3.2705 1.3321 31 1 3.2143 3.2902 2.6972 32 1 3.3347 4.5222 1.4182 33 1 4.5940 2.7790 -3.2467 34 1 7.0720 1.4240 -3.2316 35 1 7.3872 3.1711 -3.1014 36 1 6.0621 3.5628 -5.1608 37 1 5.7472 1.8156 -5.2904 38 1 8.1841 1.3906 -5.4688 39 1 8.4982 3.1378 -5.3391 40 1 9.1945 2.4461 -9.9380 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906569758.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:56 Heat of formation + Delta-G solvation = -79.359629 kcal Electronic energy + Delta-G solvation = -18326.507585 eV Core-core repulsion = 15334.588754 eV Total energy + Delta-G solvation = -2991.918831 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -40.17384 -38.48421 -36.04046 -35.28736 -33.31148 -31.48631 -31.19630 -28.97849 -27.25954 -24.15960 -23.20670 -22.28220 -20.95306 -20.62587 -19.67022 -17.66410 -16.85720 -16.49090 -15.95184 -15.88190 -15.38816 -14.90399 -14.28932 -14.00216 -13.76560 -13.40097 -13.21964 -12.76550 -12.73425 -12.66839 -12.45328 -12.05787 -11.93137 -11.85291 -11.44819 -11.10000 -11.09376 -10.90547 -10.37675 -10.25533 -10.00174 -9.81537 -9.68055 -9.31288 -9.23395 -8.87371 -8.56617 -6.07374 -4.06155 2.41380 2.97996 3.30474 3.37950 3.42162 3.45998 3.63727 4.43440 4.46800 4.50879 4.67045 4.73261 4.86201 4.99250 5.05079 5.13757 5.20566 5.26698 5.41821 5.47984 5.54984 5.60176 5.61560 5.63909 5.76606 5.84204 5.99698 6.15316 6.33551 6.42885 6.68291 6.77687 6.86183 7.21374 7.34788 7.61900 7.75529 8.30100 8.49359 8.96497 9.54846 11.05908 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.030610 B = 0.003279 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.528229 B = 8537.175828 C = 9069.211977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.351 6.351 4 C 0.050 3.950 5 H 0.115 0.885 6 C -0.123 4.123 7 H 0.122 0.878 8 C -0.122 4.122 9 C -0.190 4.190 10 H 0.129 0.871 11 C 0.538 3.462 12 O -0.545 6.545 13 N -0.720 5.720 14 C 0.113 3.887 15 C -0.113 4.113 16 C -0.011 4.011 17 C -0.522 4.522 18 H 0.072 0.928 19 C 0.066 3.934 20 N -0.903 5.903 21 Si 0.880 3.120 22 H -0.276 1.276 23 H -0.264 1.264 24 H -0.288 1.288 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.401 0.599 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.018 0.982 39 H 0.014 0.986 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.541 -2.744 21.001 25.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.270 6.270 4 C -0.009 4.009 5 H 0.133 0.867 6 C -0.142 4.142 7 H 0.140 0.860 8 C -0.179 4.179 9 C -0.212 4.212 10 H 0.147 0.853 11 C 0.324 3.676 12 O -0.423 6.423 13 N -0.370 5.370 14 C -0.009 4.009 15 C -0.151 4.151 16 C -0.049 4.049 17 C -0.560 4.560 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.542 5.542 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.189 1.189 24 H -0.214 1.214 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.235 0.765 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.033 0.967 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.839 -2.763 21.253 25.511 hybrid contribution 0.733 -0.221 -0.294 0.820 sum -13.106 -2.984 20.959 24.899 Atomic orbital electron populations 1.21748 0.93437 1.02465 1.03213 1.22586 0.95639 0.83244 1.00565 1.87809 1.18327 1.26982 1.93874 1.22673 0.82111 0.93653 1.02457 0.86727 1.22884 1.01247 0.99549 0.90557 0.86034 1.21256 0.99065 0.98355 0.99203 1.22866 0.97612 1.03911 0.96798 0.85322 1.19564 0.89063 0.76609 0.82390 1.90686 1.35982 1.48949 1.66685 1.46113 1.12559 1.72020 1.06333 1.21677 0.84375 1.01577 0.93297 1.21709 1.01153 1.01700 0.90573 1.19504 0.92389 0.96670 0.96334 1.21101 0.96782 1.49047 0.89109 0.90998 1.25031 0.99127 0.94593 0.94733 1.69915 1.31821 1.50439 1.02027 0.86770 0.84504 0.78889 0.79108 1.20225 1.18907 1.21357 0.91674 0.90901 0.91835 0.92873 0.93002 0.91274 0.91947 0.92088 0.76451 0.91797 0.91714 0.92067 0.92075 0.96326 0.96730 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.28 37.15 0.38 -0.56 16 2 C 0.06 0.43 6.53 37.15 0.24 0.67 16 3 O -0.35 -3.49 9.32 -35.23 -0.33 -3.82 16 4 C 0.05 0.52 6.11 -26.73 -0.16 0.35 16 5 H 0.12 1.15 7.93 -51.93 -0.41 0.74 16 6 C -0.12 -1.29 5.92 -90.62 -0.54 -1.82 16 7 H 0.12 1.38 7.67 -51.93 -0.40 0.98 16 8 C -0.12 -1.05 10.14 37.16 0.38 -0.67 16 9 C -0.19 -2.14 5.86 -91.77 -0.54 -2.68 16 10 H 0.13 1.28 8.14 -51.93 -0.42 0.86 16 11 C 0.54 7.81 7.61 -10.99 -0.08 7.73 16 12 O -0.54 -9.86 16.26 5.56 0.09 -9.77 16 13 N -0.72 -10.09 5.56 -60.30 -0.33 -10.42 16 14 C 0.11 1.90 5.67 -4.04 -0.02 1.87 16 15 C -0.11 -2.12 5.27 -26.73 -0.14 -2.26 16 16 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 17 C -0.52 -14.76 9.66 -34.44 -0.33 -15.09 16 18 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 20 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 21 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.61 6.94 -51.93 -0.36 0.25 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.40 4.63 8.47 -40.82 -0.35 4.29 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 39 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 335.66 15.07 5.06 5.06 Total: -1.00 -32.60 335.66 -7.38 -39.98 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.94 Total: -0.09 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -1.03 Total: -10.99 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.44 Total: -37.47 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.24 Total: -13.59 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.60 -7.38 -39.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906569758.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.381 kcal (2) G-P(sol) polarization free energy of solvation -32.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds