Wall clock time and date at job start Mon Mar 30 2020 04:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.47339 * 2 1 4 4 C 1.42898 * 114.00077 * 180.02562 * 3 2 1 5 5 H 1.09003 * 115.56450 * 4.31710 * 4 3 2 6 6 C 1.53001 * 117.50016 * 149.99801 * 4 3 2 7 7 H 1.08999 * 117.49837 * 359.97438 * 6 4 3 8 8 C 1.50700 * 117.50246 * 214.98050 * 6 4 3 9 9 O 1.21283 * 119.99803 * 291.25369 * 8 6 4 10 10 N 1.34777 * 119.99675 * 111.53244 * 8 6 4 11 11 C 1.46497 * 119.99525 * 179.72583 * 10 8 6 12 12 C 1.52999 * 109.46992 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.47306 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47245 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00092 * 359.97438 * 14 13 12 16 16 C 1.37882 * 120.00154 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99696 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99906 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47329 * 359.97438 * 18 16 14 20 20 H 1.48507 * 109.47077 * 119.99763 * 18 16 14 21 21 H 1.48504 * 109.47058 * 239.99517 * 18 16 14 22 22 C 1.53006 * 60.03070 * 107.48285 * 6 4 3 23 23 H 1.08997 * 117.49750 * 252.50305 * 22 6 4 24 24 C 1.52997 * 117.49974 * 107.50380 * 22 6 4 25 25 H 1.09005 * 109.47101 * 59.99446 * 1 2 3 26 26 H 1.08994 * 109.47446 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46616 * 299.99877 * 1 2 3 28 28 H 1.09008 * 109.47214 * 240.00117 * 2 1 3 29 29 H 1.08996 * 109.47645 * 120.00306 * 2 1 3 30 30 H 0.97000 * 119.99894 * 359.71837 * 10 8 6 31 31 H 1.08995 * 109.47421 * 299.99467 * 11 10 8 32 32 H 1.09001 * 109.47621 * 60.00103 * 11 10 8 33 33 H 1.09009 * 109.47378 * 299.99899 * 12 11 10 34 34 H 1.08993 * 109.47209 * 59.99808 * 12 11 10 35 35 H 1.08995 * 109.47215 * 299.99822 * 13 12 11 36 36 H 1.09001 * 109.47513 * 60.00266 * 13 12 11 37 37 H 0.97008 * 120.00088 * 180.02562 * 17 16 14 38 38 H 1.09007 * 109.46995 * 60.00228 * 24 22 6 39 39 H 1.08994 * 109.47217 * 179.97438 * 24 22 6 40 40 H 1.08996 * 109.47085 * 300.00376 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9772 0.5197 -0.0750 6 6 4.0421 2.6876 -0.6793 7 1 3.3576 3.4089 -1.1257 8 6 5.3532 2.5040 -1.3993 9 8 6.3644 2.2769 -0.7693 10 7 5.4030 2.5979 -2.7429 11 6 6.6786 2.4254 -3.4423 12 6 6.4590 2.5787 -4.9487 13 6 7.7911 2.3980 -5.6793 14 6 7.5749 2.5497 -7.1629 15 1 6.5862 2.7540 -7.5465 16 6 8.6392 2.4264 -8.0309 17 7 9.8430 2.1770 -7.5638 18 14 8.3710 2.6137 -9.8700 19 1 6.9360 2.8882 -10.1356 20 1 9.1934 3.7411 -10.3779 21 1 8.7704 1.3601 -10.5587 22 6 4.0520 2.5735 0.8465 23 1 3.3741 3.2198 1.4039 24 6 5.3922 2.2819 1.5244 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 4.5942 2.7795 -3.2466 31 1 7.3860 3.1803 -3.0993 32 1 7.0766 1.4326 -3.2328 33 1 5.7516 1.8235 -5.2915 34 1 6.0608 3.5714 -5.1586 35 1 8.4987 3.1529 -5.3366 36 1 8.1889 1.4051 -5.4694 37 1 10.5919 2.0907 -8.1744 38 1 6.0987 3.0784 1.2905 39 1 5.2495 2.2287 2.6037 40 1 5.7835 1.3313 1.1620 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906569759.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:01 Heat of formation + Delta-G solvation = -79.342231 kcal Electronic energy + Delta-G solvation = -18380.191736 eV Core-core repulsion = 15388.273660 eV Total energy + Delta-G solvation = -2991.918077 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.20371 -38.34250 -36.05758 -35.07959 -33.32021 -31.26787 -31.25251 -28.53053 -26.80832 -24.20362 -23.11504 -22.40991 -21.19472 -20.70726 -19.47212 -17.69994 -16.55335 -16.33966 -15.82910 -15.62664 -15.22964 -14.84914 -14.44393 -13.92863 -13.66819 -13.24864 -13.13509 -12.88030 -12.50310 -12.32390 -12.20740 -11.99405 -11.82844 -11.72077 -11.47356 -11.04446 -10.92310 -10.74242 -10.57750 -10.40657 -9.88062 -9.77862 -9.46101 -9.17972 -9.05266 -8.76645 -8.38685 -6.03091 -4.06130 2.48006 3.05779 3.29193 3.36701 3.40277 3.53238 3.68116 4.43421 4.48526 4.60617 4.69496 4.75555 4.92453 5.02642 5.07466 5.16097 5.32837 5.33051 5.46379 5.56914 5.63531 5.74989 5.76793 5.78247 5.86680 6.01527 6.15076 6.37747 6.52313 6.58718 6.82796 6.90963 6.99388 7.62476 7.72065 7.74727 7.95768 8.36015 8.41083 9.00811 9.58214 11.08265 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.027570 B = 0.003264 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.356826 B = 8577.493934 C = 9351.341673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.356 6.356 4 C 0.048 3.952 5 H 0.115 0.885 6 C -0.192 4.192 7 H 0.127 0.873 8 C 0.537 3.463 9 O -0.538 6.538 10 N -0.721 5.721 11 C 0.116 3.884 12 C -0.121 4.121 13 C 0.024 3.976 14 C -0.522 4.522 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.120 4.120 23 H 0.115 0.885 24 C -0.110 4.110 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.399 0.601 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.261 0.739 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.511 -2.331 16.543 23.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.274 6.274 4 C -0.011 4.011 5 H 0.133 0.867 6 C -0.213 4.213 7 H 0.145 0.855 8 C 0.322 3.678 9 O -0.416 6.416 10 N -0.372 5.372 11 C -0.006 4.006 12 C -0.159 4.159 13 C -0.014 4.014 14 C -0.560 4.560 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.139 4.139 23 H 0.133 0.867 24 C -0.167 4.167 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.233 0.767 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.709 -2.373 16.916 23.207 hybrid contribution -0.366 0.072 -1.507 1.553 sum -16.076 -2.301 15.409 22.387 Atomic orbital electron populations 1.21753 0.93473 1.02448 1.03205 1.22580 0.95619 0.83257 1.00565 1.87827 1.18559 1.27068 1.93990 1.22835 0.81880 0.93646 1.02735 0.86697 1.22892 0.97769 1.03743 0.96902 0.85473 1.19563 0.89020 0.76820 0.82372 1.90701 1.36034 1.48698 1.66132 1.46205 1.12511 1.72050 1.06394 1.21653 0.84077 1.01614 0.93263 1.21890 1.02155 1.00855 0.90999 1.19032 0.90376 0.97510 0.94485 1.21247 0.94394 1.48725 0.91662 0.92587 1.25036 0.95220 0.95256 0.98990 1.69977 0.99449 1.49099 1.34775 0.86524 0.78240 0.77705 0.85453 1.19741 1.20980 1.20996 1.22876 0.99572 1.00799 0.90641 0.86707 1.21354 0.93807 1.03566 0.97991 0.91709 0.90892 0.91825 0.92894 0.92979 0.76726 0.91714 0.91806 0.92747 0.92702 0.96268 0.96293 0.92971 0.90859 0.93247 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.16 0.38 -0.61 16 2 C 0.06 0.46 6.53 37.16 0.24 0.70 16 3 O -0.36 -3.80 10.60 -35.23 -0.37 -4.17 16 4 C 0.05 0.52 5.80 -26.69 -0.15 0.36 16 5 H 0.12 1.22 7.84 -51.93 -0.41 0.81 16 6 C -0.19 -2.23 6.13 -91.77 -0.56 -2.79 16 7 H 0.13 1.30 8.14 -51.93 -0.42 0.88 16 8 C 0.54 7.92 7.59 -10.98 -0.08 7.83 16 9 O -0.54 -9.54 13.10 5.55 0.07 -9.47 16 10 N -0.72 -10.49 5.56 -60.30 -0.33 -10.82 16 11 C 0.12 2.06 5.67 -4.04 -0.02 2.03 16 12 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 13 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 14 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.86 13.29 55.43 0.74 -26.13 16 18 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 19 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C -0.12 -1.29 6.36 -90.58 -0.58 -1.87 16 23 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 24 C -0.11 -1.26 8.43 37.16 0.31 -0.95 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.40 4.81 8.47 -40.82 -0.35 4.47 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.07 0.96 7.26 -51.93 -0.38 0.58 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.83 7.02 -51.93 -0.36 0.46 16 LS Contribution 335.63 15.07 5.06 5.06 Total: -1.00 -31.68 335.63 -7.97 -39.65 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.95 Total: 0.16 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -1.15 Total: -10.76 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.40 Total: -36.95 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.30 Total: -13.64 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.68 -7.97 -39.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906569759.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.694 kcal (2) G-P(sol) polarization free energy of solvation -31.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds