Wall clock time and date at job start Mon Mar 30 2020 03:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46898 * 109.47260 * 2 1 4 4 C 1.46903 * 110.99686 * 300.36710 * 3 2 1 5 5 C 1.50694 * 109.47688 * 293.95764 * 4 3 2 6 6 H 1.08003 * 119.99501 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00613 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99613 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00371 * 179.97438 * 7 5 4 10 10 H 1.48491 * 109.46891 * 59.99831 * 9 7 5 11 11 H 1.48500 * 109.47155 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46990 * 299.99961 * 9 7 5 13 13 C 1.46896 * 111.00439 * 64.32522 * 3 2 1 14 14 C 1.52997 * 109.47264 * 75.62640 * 13 3 2 15 15 H 1.08998 * 110.27251 * 304.13113 * 14 13 3 16 16 C 1.55009 * 110.30336 * 182.05592 * 14 13 3 17 17 C 1.55469 * 101.03685 * 205.00912 * 16 14 13 18 18 C 1.53733 * 101.99224 * 33.54731 * 17 16 14 19 19 C 1.53305 * 114.78986 * 208.07676 * 18 17 16 20 20 O 1.44320 * 85.29488 * 222.04208 * 19 18 17 21 21 C 1.44321 * 93.45270 * 23.68069 * 20 19 18 22 22 O 1.42600 * 108.46554 * 339.00406 * 18 17 16 23 23 H 1.08994 * 109.46921 * 59.92713 * 1 2 3 24 24 H 1.09002 * 109.47110 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47018 * 299.92822 * 1 2 3 26 26 H 1.09005 * 109.47271 * 119.99758 * 2 1 3 27 27 H 1.09000 * 109.47622 * 239.99603 * 2 1 3 28 28 H 1.09011 * 109.46902 * 53.95634 * 4 3 2 29 29 H 1.09007 * 109.47280 * 173.95050 * 4 3 2 30 30 H 0.97001 * 120.00122 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.47341 * 195.63086 * 13 3 2 32 32 H 1.09004 * 109.46519 * 315.62684 * 13 3 2 33 33 H 1.09006 * 111.10849 * 322.95472 * 16 14 13 34 34 H 1.09005 * 111.10778 * 87.06548 * 16 14 13 35 35 H 1.08998 * 110.92510 * 151.72125 * 17 16 14 36 36 H 1.08994 * 110.92672 * 275.34146 * 17 16 14 37 37 H 1.08995 * 113.90578 * 336.13443 * 19 18 17 38 38 H 1.09000 * 113.89389 * 107.95264 * 19 18 17 39 39 H 1.09004 * 113.89842 * 222.23295 * 21 20 19 40 40 H 1.08999 * 113.90240 * 90.41511 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5414 2.1124 -1.1833 5 6 2.1559 1.5148 -2.4228 6 1 2.8343 0.6785 -2.3397 7 6 1.8522 2.0356 -3.6627 8 7 1.0258 3.0536 -3.7638 9 14 2.6145 1.2952 -5.1990 10 1 2.2256 -0.1339 -5.3051 11 1 2.1300 2.0297 -6.3953 12 1 4.0936 1.4010 -5.1180 13 6 1.6350 2.0794 1.2360 14 6 2.5249 1.6041 2.3862 15 1 2.4682 0.5201 2.4844 16 6 2.1013 2.2872 3.7116 17 6 3.4280 2.2182 4.5192 18 6 4.4840 2.3685 3.4121 19 6 5.8303 1.6997 3.7129 20 8 6.4143 2.8955 3.1546 21 6 5.2467 3.6984 3.4282 22 8 3.8863 2.0149 2.1667 23 1 -0.3633 0.5149 -0.8893 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5127 0.8906 26 1 1.8933 -0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 0.4557 2.0355 -1.2428 29 1 1.8276 3.1613 -1.1053 30 1 0.8118 3.4198 -4.6362 31 1 1.7575 3.1542 1.1020 32 1 0.5930 1.8586 1.4675 33 1 1.7985 3.3204 3.5415 34 1 1.3101 1.7249 4.2076 35 1 3.4925 3.0396 5.2328 36 1 3.5268 1.2574 5.0243 37 1 6.0293 1.5659 4.7762 38 1 6.0178 0.8009 3.1254 39 1 4.9748 4.3733 2.6166 40 1 5.2643 4.1857 4.4031 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929774722.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:33 Heat of formation + Delta-G solvation = -45.659526 kcal Electronic energy + Delta-G solvation = -19898.466570 eV Core-core repulsion = 16908.009086 eV Total energy + Delta-G solvation = -2990.457485 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.95748 -38.25180 -36.64207 -32.58697 -32.19754 -30.69176 -29.18646 -27.41808 -26.64948 -25.32948 -23.40593 -22.70742 -21.25452 -19.88055 -19.05322 -16.93292 -16.50975 -16.15208 -15.82128 -15.37471 -14.84207 -14.73954 -14.11752 -14.07980 -13.70580 -13.18517 -12.93792 -12.83732 -12.34481 -12.09586 -11.80770 -11.71165 -11.40306 -11.13474 -11.05577 -10.90114 -10.63990 -10.59563 -10.46318 -10.30390 -10.01288 -9.76230 -9.68518 -9.34005 -9.07227 -8.36199 -7.07116 -5.96055 -3.96084 3.38539 3.39169 3.42021 3.46120 3.96867 4.18111 4.46002 4.48793 4.68241 4.82418 5.07145 5.15521 5.28953 5.38493 5.41076 5.47779 5.52046 5.57620 5.67521 5.71000 5.78285 5.81927 5.91209 5.96645 6.03616 6.08686 6.14068 6.21230 6.41896 6.46179 6.72884 6.92985 7.26858 7.41586 7.46446 7.88009 8.18110 8.29256 8.63827 9.11154 9.67439 11.14861 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.023805 B = 0.005453 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.923347 B = 5133.900566 C = 5761.278520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.060 3.940 3 N -0.526 5.526 4 C 0.190 3.810 5 C -0.501 4.501 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.051 3.949 14 C 0.087 3.913 15 H 0.069 0.931 16 C -0.152 4.152 17 C -0.148 4.148 18 C 0.042 3.958 19 C 0.029 3.971 20 O -0.374 6.374 21 C 0.031 3.969 22 O -0.317 6.317 23 H 0.071 0.929 24 H 0.046 0.954 25 H 0.042 0.958 26 H 0.048 0.952 27 H 0.080 0.920 28 H -0.002 1.002 29 H 0.027 0.973 30 H 0.260 0.740 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.970 -2.250 18.209 18.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.068 4.068 3 N -0.249 5.249 4 C 0.066 3.934 5 C -0.540 4.540 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.541 5.541 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.078 4.078 14 C 0.029 3.971 15 H 0.087 0.913 16 C -0.190 4.190 17 C -0.186 4.186 18 C 0.001 3.999 19 C -0.048 4.048 20 O -0.292 6.292 21 C -0.046 4.046 22 O -0.235 6.235 23 H 0.090 0.910 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.099 0.901 28 H 0.016 0.984 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.758 -2.073 17.698 18.031 hybrid contribution -0.838 -0.330 -0.589 1.076 sum 1.920 -2.404 17.109 17.384 Atomic orbital electron populations 1.22407 0.99591 1.00885 1.02000 1.21992 0.91875 0.91795 1.01161 1.62264 1.59233 1.01617 1.01827 1.19790 0.93845 0.93706 0.86097 1.21122 1.26546 1.16117 0.90222 0.92015 1.24967 0.95400 0.95177 0.99087 1.69950 1.35438 1.24463 1.24288 0.86584 0.79742 0.79038 0.82188 1.20365 1.21443 1.20164 1.22231 0.95071 0.99492 0.91023 1.23223 0.82016 0.98100 0.93714 0.91282 1.23342 0.97463 1.02364 0.95878 1.23081 0.94586 1.03107 0.97789 1.24534 0.93954 0.94896 0.86560 1.24380 0.90092 0.91430 0.98885 1.89732 1.37799 1.21726 1.79980 1.24396 0.83368 0.95089 1.01709 1.88673 1.24998 1.85060 1.24724 0.91048 0.93487 0.93871 0.93308 0.90143 0.98440 0.95501 0.93002 0.90962 0.93819 0.90127 0.90040 0.89896 0.90145 0.89671 0.88473 0.88296 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.39 9.28 37.16 0.34 -3.04 16 2 C 0.06 1.18 5.75 -3.83 -0.02 1.15 16 3 N -0.53 -11.56 4.61 -236.07 -1.09 -12.65 16 4 C 0.19 5.02 4.45 -4.98 -0.02 4.99 16 5 C -0.50 -14.37 8.52 -34.44 -0.29 -14.66 16 6 H 0.06 1.77 7.10 -52.48 -0.37 1.40 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 9 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.05 0.91 4.59 -3.83 -0.02 0.89 16 14 C 0.09 1.31 3.50 -25.67 -0.09 1.22 16 15 H 0.07 1.02 6.79 -51.93 -0.35 0.67 16 16 C -0.15 -1.66 6.58 -24.36 -0.16 -1.82 16 17 C -0.15 -1.42 6.37 -25.04 -0.16 -1.58 16 18 C 0.04 0.55 1.69 -89.92 -0.15 0.39 16 19 C 0.03 0.36 8.70 37.27 0.32 0.68 16 20 O -0.37 -5.76 12.46 -42.16 -0.53 -6.29 16 21 C 0.03 0.40 8.69 37.28 0.32 0.72 16 22 O -0.32 -5.51 10.82 -42.16 -0.46 -5.97 16 23 H 0.07 1.49 6.26 -51.93 -0.33 1.17 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.04 0.70 6.23 -51.93 -0.32 0.37 16 26 H 0.05 0.83 6.71 -51.93 -0.35 0.48 16 27 H 0.08 1.72 6.87 -51.93 -0.36 1.36 16 28 H 0.00 -0.06 5.99 -51.92 -0.31 -0.37 16 29 H 0.03 0.77 7.83 -51.93 -0.41 0.37 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.07 1.37 7.74 -51.93 -0.40 0.97 16 32 H 0.04 0.73 5.85 -51.93 -0.30 0.42 16 33 H 0.08 0.87 8.05 -51.93 -0.42 0.45 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.63 7.78 -51.93 -0.40 0.23 16 36 H 0.08 0.66 8.11 -51.93 -0.42 0.24 16 37 H 0.09 0.76 8.12 -51.93 -0.42 0.34 16 38 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.09 0.79 7.90 -51.93 -0.41 0.38 16 LS Contribution 313.83 15.07 4.73 4.73 Total: -1.00 -32.40 313.83 -8.05 -40.45 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -6.40 Total: -1.45 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -0.02 Total: -9.57 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: -0.35 Total: -39.06 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: -0.98 Total: -12.25 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.40 -8.05 -40.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929774722.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.210 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds