Wall clock time and date at job start Mon Mar 30 2020 04:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46504 * 120.00135 * 2 1 4 4 C 1.50702 * 109.47025 * 269.99957 * 3 2 1 5 5 H 1.08007 * 119.99895 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00115 * 179.97438 * 4 3 2 7 7 N 1.31508 * 119.99996 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 120.00120 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.46780 * 89.99972 * 8 6 4 10 10 H 1.48496 * 109.47232 * 210.00025 * 8 6 4 11 11 H 1.48501 * 109.46978 * 330.00287 * 8 6 4 12 12 C 1.34775 * 120.00300 * 179.97438 * 2 1 3 13 13 O 1.21275 * 120.00279 * 180.02562 * 12 2 1 14 14 C 1.50703 * 119.99776 * 359.97438 * 12 2 1 15 15 S 1.81000 * 109.47042 * 180.02562 * 14 12 2 16 16 C 1.76199 * 99.99871 * 180.02562 * 15 14 12 17 17 N 1.31650 * 126.08723 * 359.68905 * 16 15 14 18 18 C 1.33346 * 109.69224 * 179.86811 * 17 16 15 19 19 N 1.30592 * 109.13923 * 0.40028 * 18 17 16 20 20 N 1.35073 * 126.08821 * 180.02562 * 16 15 14 21 21 H 0.97003 * 126.83487 * 359.94938 * 20 16 15 22 22 H 1.08990 * 109.46957 * 270.00146 * 1 2 3 23 23 H 1.09004 * 109.46867 * 30.00721 * 1 2 3 24 24 H 1.09002 * 109.46939 * 149.99933 * 1 2 3 25 25 H 1.09001 * 109.46989 * 29.99110 * 3 2 1 26 26 H 1.09000 * 109.47446 * 149.99933 * 3 2 1 27 27 H 0.97004 * 120.00415 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.46904 * 60.00309 * 14 12 2 29 29 H 1.09005 * 109.47194 * 300.00350 * 14 12 2 30 30 H 1.08002 * 125.43416 * 180.13244 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0982 1.0957 -2.2418 6 6 3.1261 2.8779 -1.6728 7 7 3.5525 3.6185 -0.6733 8 14 3.4381 3.4168 -3.4341 9 1 2.3079 4.2590 -3.9015 10 1 4.6980 4.2002 -3.4962 11 1 3.5562 2.2194 -4.3045 12 6 2.1390 -1.1671 0.0005 13 8 3.3517 -1.1671 0.0010 14 6 1.3855 -2.4723 0.0017 15 16 2.5617 -3.8480 0.0029 16 6 1.4416 -5.2082 0.0034 17 7 0.1274 -5.1305 0.0086 18 6 -0.3952 -6.3572 0.0043 19 7 0.5720 -7.2347 0.0048 20 7 1.7785 -6.5162 0.0048 21 1 2.6753 -6.8858 0.0050 22 1 -0.3633 0.0000 1.0276 23 1 -0.3633 0.8900 -0.5140 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6084 2.0284 0.5137 26 1 3.1500 1.1384 0.5138 27 1 4.0287 4.4448 -0.8505 28 1 0.7585 -2.5306 -0.8880 29 1 0.7591 -2.5294 0.8920 30 1 -1.4502 -6.5884 0.0050 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006636936.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:19 Heat of formation + Delta-G solvation = 56.635430 kcal Electronic energy + Delta-G solvation = -16108.795655 eV Core-core repulsion = 13260.727534 eV Total energy + Delta-G solvation = -2848.068121 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.073 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.06509 -39.06023 -34.98837 -32.79160 -32.67029 -31.48460 -30.09738 -27.48297 -25.75726 -23.59806 -22.73381 -22.19726 -19.44337 -18.35668 -16.66663 -16.48485 -16.46472 -15.79878 -15.33860 -15.07829 -14.75298 -14.33575 -13.81875 -13.25551 -12.80718 -12.30396 -12.24188 -12.05569 -11.91918 -11.27336 -10.94024 -10.80038 -10.59039 -10.57652 -10.44530 -10.35502 -10.20968 -9.69757 -9.22877 -8.48071 -7.92742 -7.76845 -6.09117 -4.14337 0.83302 1.27169 1.87830 2.65660 2.70182 3.15305 3.28197 3.35206 3.39792 3.80296 4.40556 4.42950 4.60101 4.88366 5.10769 5.25835 5.38364 5.63185 5.87085 5.88834 6.16332 6.17632 6.61606 6.90946 7.33674 7.40525 7.72464 7.86113 8.15837 8.21020 8.73797 8.92387 9.50964 10.99072 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.040691 B = 0.004316 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.947782 B = 6485.648584 C = 6608.657597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.591 5.591 3 C 0.245 3.755 4 C -0.530 4.530 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.520 3.480 13 O -0.529 6.529 14 C -0.137 4.137 15 S 0.086 5.914 16 C 0.249 3.751 17 N -0.546 5.546 18 C 0.212 3.788 19 N -0.319 5.319 20 N -0.466 5.466 21 H 0.444 0.556 22 H 0.049 0.951 23 H 0.078 0.922 24 H 0.060 0.940 25 H 0.036 0.964 26 H 0.046 0.954 27 H 0.264 0.736 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.441 -15.565 2.308 17.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.323 5.323 3 C 0.126 3.874 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.304 3.696 13 O -0.407 6.407 14 C -0.290 4.290 15 S 0.312 5.688 16 C -0.137 4.137 17 N -0.280 5.280 18 C -0.093 4.093 19 N -0.149 5.149 20 N -0.187 5.187 21 H 0.291 0.709 22 H 0.067 0.933 23 H 0.097 0.903 24 H 0.079 0.921 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -5.908 -15.809 2.365 17.042 hybrid contribution -0.800 0.208 -0.997 1.295 sum -6.707 -15.601 1.368 17.037 Atomic orbital electron populations 1.21746 0.80872 1.03036 1.00895 1.48078 1.06515 1.07273 1.70438 1.19385 0.92640 0.77562 0.97777 1.21415 1.36845 1.06429 0.92160 0.92335 1.24929 0.95226 0.96330 0.97526 1.69925 1.38265 1.14277 1.30799 0.86480 0.77721 0.78631 0.84516 1.20600 1.21041 1.19836 1.19362 0.87702 0.84080 0.78504 1.90722 1.13199 1.86468 1.50339 1.23897 1.01670 0.94445 1.08949 1.86576 1.01540 0.89641 1.91032 1.27063 0.96221 0.91439 0.98935 1.71096 1.04149 1.25644 1.27089 1.26040 1.00512 0.85710 0.97085 1.77893 0.90053 1.19906 1.27026 1.47847 1.09360 1.03327 1.58168 0.70936 0.93257 0.90342 0.92103 0.94590 0.93579 0.92624 0.85937 0.86068 0.76371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.16 10.24 59.85 0.61 1.78 16 2 N -0.59 -11.93 2.86 -182.95 -0.52 -12.45 16 3 C 0.25 6.20 5.16 -5.19 -0.03 6.17 16 4 C -0.53 -14.65 9.39 -34.44 -0.32 -14.97 16 5 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 8 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.52 10.20 7.69 -10.98 -0.08 10.12 16 13 O -0.53 -12.57 15.44 5.56 0.09 -12.49 16 14 C -0.14 -1.97 4.25 36.01 0.15 -1.82 16 15 S 0.09 1.17 21.45 -107.50 -2.31 -1.14 16 16 C 0.25 3.12 8.31 -89.38 -0.74 2.38 16 17 N -0.55 -7.02 10.57 -14.69 -0.16 -7.18 16 18 C 0.21 2.33 13.02 -91.82 -1.20 1.14 16 19 N -0.32 -3.79 12.78 29.29 0.37 -3.42 16 20 N -0.47 -5.13 7.47 30.45 0.23 -4.91 16 21 H 0.44 3.54 8.96 -182.35 -1.63 1.91 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 24 H 0.06 0.74 6.44 -51.93 -0.33 0.40 16 25 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 26 H 0.05 1.31 7.42 -51.93 -0.39 0.93 16 27 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 28 H 0.12 1.62 7.40 -51.92 -0.38 1.23 16 29 H 0.12 1.52 8.11 -51.91 -0.42 1.10 16 30 H 0.22 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 285.03 15.07 4.30 4.30 Total: -1.00 -33.67 285.03 -8.38 -42.04 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -4.39 Total: -2.33 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -1.70 Total: 6.44 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.66 Total: -53.29 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.49 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.31 Total: -1.14 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.67 -8.38 -42.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006636936.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.680 kcal (2) G-P(sol) polarization free energy of solvation -33.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds