Wall clock time and date at job start Mon Mar 30 2020 04:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46504 * 120.00135 * 2 1 4 4 C 1.50702 * 109.47025 * 269.99957 * 3 2 1 5 5 H 1.08007 * 119.99895 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00115 * 179.97438 * 4 3 2 7 7 N 1.31508 * 119.99996 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 120.00120 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.46780 * 89.99972 * 8 6 4 10 10 H 1.48496 * 109.47232 * 210.00025 * 8 6 4 11 11 H 1.48501 * 109.46978 * 330.00287 * 8 6 4 12 12 C 1.34775 * 120.00300 * 179.97438 * 2 1 3 13 13 O 1.21275 * 120.00279 * 180.02562 * 12 2 1 14 14 C 1.50703 * 119.99776 * 359.97438 * 12 2 1 15 15 S 1.81000 * 109.47042 * 180.02562 * 14 12 2 16 16 C 1.76199 * 99.99871 * 180.02562 * 15 14 12 17 17 N 1.31650 * 126.08723 * 359.68905 * 16 15 14 18 18 C 1.33346 * 109.69224 * 179.86811 * 17 16 15 19 19 N 1.30592 * 109.13923 * 0.40028 * 18 17 16 20 20 N 1.35073 * 126.08821 * 180.02562 * 16 15 14 21 21 H 0.97003 * 126.83487 * 359.94938 * 20 16 15 22 22 H 1.08990 * 109.46957 * 270.00146 * 1 2 3 23 23 H 1.09004 * 109.46867 * 30.00721 * 1 2 3 24 24 H 1.09002 * 109.46939 * 149.99933 * 1 2 3 25 25 H 1.09001 * 109.46989 * 29.99110 * 3 2 1 26 26 H 1.09000 * 109.47446 * 149.99933 * 3 2 1 27 27 H 0.97004 * 120.00415 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.46904 * 60.00309 * 14 12 2 29 29 H 1.09005 * 109.47194 * 300.00350 * 14 12 2 30 30 H 1.08002 * 125.43416 * 180.13244 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0982 1.0957 -2.2418 6 6 3.1261 2.8779 -1.6728 7 7 3.5525 3.6185 -0.6733 8 14 3.4381 3.4168 -3.4341 9 1 2.3079 4.2590 -3.9015 10 1 4.6980 4.2002 -3.4962 11 1 3.5562 2.2194 -4.3045 12 6 2.1390 -1.1671 0.0005 13 8 3.3517 -1.1671 0.0010 14 6 1.3855 -2.4723 0.0017 15 16 2.5617 -3.8480 0.0029 16 6 1.4416 -5.2082 0.0034 17 7 0.1274 -5.1305 0.0086 18 6 -0.3952 -6.3572 0.0043 19 7 0.5720 -7.2347 0.0048 20 7 1.7785 -6.5162 0.0048 21 1 2.6753 -6.8858 0.0050 22 1 -0.3633 0.0000 1.0276 23 1 -0.3633 0.8900 -0.5140 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6084 2.0284 0.5137 26 1 3.1500 1.1384 0.5138 27 1 4.0287 4.4448 -0.8505 28 1 0.7585 -2.5306 -0.8880 29 1 0.7591 -2.5294 0.8920 30 1 -1.4502 -6.5884 0.0050 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006636936.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:19 Heat of formation + Delta-G solvation = 33.914262 kcal Electronic energy + Delta-G solvation = -16109.780918 eV Core-core repulsion = 13260.727534 eV Total energy + Delta-G solvation = -2849.053384 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.073 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.94976 -40.65750 -36.67881 -34.76601 -33.62465 -32.41783 -31.54635 -29.19468 -27.27816 -24.94350 -24.26906 -23.05510 -20.65981 -19.64427 -18.69941 -17.97791 -17.56125 -16.95009 -16.86144 -16.45914 -16.08270 -15.53657 -15.00867 -14.69647 -14.40272 -13.89871 -13.57497 -13.45898 -13.23263 -13.07844 -12.80474 -12.52540 -12.20106 -11.82397 -11.70055 -11.48462 -11.34224 -11.28050 -10.84811 -10.62599 -9.49433 -8.92219 -8.21637 -6.36051 -0.20826 0.36796 0.80655 1.38993 1.41679 1.51609 1.64792 1.79389 1.89614 2.27750 2.43659 3.08835 3.47281 3.71248 3.76465 4.00217 4.26722 4.47925 4.74339 4.97499 5.01521 5.02867 5.23269 5.38711 5.53828 5.79632 5.84963 6.05501 6.60194 6.73702 6.85288 7.20570 7.37465 8.85608 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.040691 B = 0.004316 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.947782 B = 6485.648584 C = 6608.657597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.599 5.599 3 C 0.259 3.741 4 C -0.544 4.544 5 H 0.055 0.945 6 C 0.010 3.990 7 N -0.928 5.928 8 Si 0.966 3.034 9 H -0.264 1.264 10 H -0.282 1.282 11 H -0.273 1.273 12 C 0.513 3.487 13 O -0.581 6.581 14 C -0.121 4.121 15 S 0.074 5.926 16 C 0.246 3.754 17 N -0.560 5.560 18 C 0.211 3.789 19 N -0.333 5.333 20 N -0.459 5.459 21 H 0.455 0.545 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.029 0.971 26 H 0.003 0.997 27 H 0.267 0.733 28 H 0.141 0.859 29 H 0.146 0.854 30 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.200 -16.787 1.457 19.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.330 5.330 3 C 0.137 3.863 4 C -0.583 4.583 5 H 0.074 0.926 6 C -0.190 4.190 7 N -0.567 5.567 8 Si 0.791 3.209 9 H -0.189 1.189 10 H -0.208 1.208 11 H -0.197 1.197 12 C 0.299 3.701 13 O -0.462 6.462 14 C -0.272 4.272 15 S 0.300 5.700 16 C -0.141 4.141 17 N -0.294 5.294 18 C -0.093 4.093 19 N -0.163 5.163 20 N -0.181 5.181 21 H 0.304 0.696 22 H 0.094 0.906 23 H 0.089 0.911 24 H 0.113 0.887 25 H 0.047 0.953 26 H 0.021 0.979 27 H 0.076 0.924 28 H 0.159 0.841 29 H 0.164 0.836 30 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -7.707 -17.059 1.518 18.780 hybrid contribution -0.280 0.518 -0.682 0.901 sum -7.988 -16.541 0.836 18.388 Atomic orbital electron populations 1.22045 0.77369 1.04375 1.03082 1.48058 1.08660 1.05913 1.70336 1.18846 0.91321 0.79885 0.96199 1.21709 1.36936 1.06601 0.93047 0.92646 1.25822 0.94887 0.96439 1.01820 1.70040 1.38938 1.14756 1.32997 0.85433 0.78020 0.78228 0.79246 1.18893 1.20757 1.19732 1.20153 0.87405 0.85506 0.77025 1.90694 1.15686 1.87475 1.52361 1.23689 1.01158 0.91478 1.10922 1.86706 1.01745 0.89979 1.91581 1.26789 0.96197 0.91460 0.99613 1.71086 1.04148 1.26710 1.27423 1.26788 1.01936 0.84809 0.95805 1.77891 0.90392 1.20498 1.27538 1.47874 1.09975 1.02856 1.57408 0.69648 0.90603 0.91059 0.88716 0.95296 0.97888 0.92382 0.84121 0.83616 0.72879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.01 10.24 127.77 1.31 3.32 16 2 N -0.60 -24.02 2.86 -851.12 -2.43 -26.45 16 3 C 0.26 13.48 5.16 85.63 0.44 13.92 16 4 C -0.54 -30.57 9.39 25.60 0.24 -30.33 16 5 H 0.06 3.07 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.54 5.46 84.66 0.46 1.00 16 7 N -0.93 -55.14 13.29 21.45 0.28 -54.85 16 8 Si 0.97 44.11 29.54 68.60 2.03 46.13 16 9 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 12 C 0.51 20.01 7.69 87.66 0.67 20.68 16 13 O -0.58 -28.35 15.44 -3.01 -0.05 -28.40 16 14 C -0.12 -3.23 4.25 71.24 0.30 -2.92 16 15 S 0.07 1.92 21.45 -56.49 -1.21 0.71 16 16 C 0.25 5.66 8.31 179.92 1.50 7.15 16 17 N -0.56 -12.80 10.57 -200.40 -2.12 -14.91 16 18 C 0.21 4.02 13.02 180.77 2.35 6.37 16 19 N -0.33 -7.13 12.78 -61.25 -0.78 -7.92 16 20 N -0.46 -9.24 7.47 -57.58 -0.43 -9.68 16 21 H 0.45 6.58 8.96 -213.11 -1.91 4.67 16 22 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.07 2.07 8.07 -2.39 -0.02 2.05 16 24 H 0.09 1.96 6.44 -2.39 -0.02 1.94 16 25 H 0.03 1.52 8.07 -2.39 -0.02 1.50 16 26 H 0.00 0.18 7.42 -2.39 -0.02 0.16 16 27 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 28 H 0.14 3.28 7.40 -2.39 -0.02 3.26 16 29 H 0.15 3.19 8.11 -2.39 -0.02 3.17 16 30 H 0.26 2.52 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -74.03 285.03 1.83 -72.20 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -0.73 Total: 3.97 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: 7.28 Total: 19.20 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -5.48 Total: -113.81 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.05 Total: -28.40 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -1.21 Total: 0.71 kcal Total: -74.03 1.83 -72.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006636936.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.109 kcal (2) G-P(sol) polarization free energy of solvation -74.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds