Wall clock time and date at job start Mon Mar 30 2020 04:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 119.99858 * 2 1 4 4 H 1.48498 * 109.47362 * 269.99967 * 3 2 1 5 5 H 1.48499 * 109.47417 * 30.00394 * 3 2 1 6 6 H 1.48504 * 109.46923 * 150.00133 * 3 2 1 7 7 C 1.38953 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00176 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99904 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00138 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99913 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00449 * 179.97438 * 10 9 7 13 13 N 1.46494 * 109.47101 * 179.97438 * 12 10 9 14 14 C 1.39995 * 119.99770 * 180.02562 * 13 12 10 15 15 C 1.38793 * 120.05727 * 359.72567 * 14 13 12 16 16 C 1.38169 * 119.97888 * 180.27904 * 15 14 13 17 17 C 1.38453 * 120.08535 * 359.97438 * 16 15 14 18 18 F 1.35095 * 119.94760 * 180.02562 * 17 16 15 19 19 C 1.38474 * 120.11034 * 0.02562 * 17 16 15 20 20 C 1.38287 * 120.02188 * 0.02562 * 19 17 16 21 21 F 1.35102 * 120.04217 * 179.97438 * 20 19 17 22 22 H 0.96995 * 120.00236 * 0.02562 * 1 2 3 23 23 H 0.97003 * 120.00158 * 359.97438 * 9 7 2 24 24 H 1.09004 * 109.46706 * 59.99539 * 12 10 9 25 25 H 1.08995 * 109.47231 * 299.99818 * 12 10 9 26 26 H 0.96997 * 120.00606 * 0.02562 * 13 12 10 27 27 H 1.08008 * 120.01183 * 0.25051 * 15 14 13 28 28 H 1.07997 * 119.95610 * 180.02562 * 16 15 14 29 29 H 1.07994 * 119.98465 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9972 -3.5578 -0.0016 11 8 3.2102 -3.5579 -0.0011 12 6 1.2438 -4.8630 -0.0022 13 7 2.1958 -5.9764 -0.0027 14 6 1.7291 -7.2963 -0.0038 15 6 0.3648 -7.5513 0.0013 16 6 -0.0939 -8.8546 0.0060 17 6 0.8057 -9.9070 0.0051 18 9 0.3541 -11.1802 0.0092 19 6 2.1676 -9.6568 0.0000 20 6 2.6317 -8.3541 -0.0036 21 9 3.9604 -8.1095 -0.0081 22 1 -0.4850 0.8400 -0.0004 23 1 0.3534 -2.3907 -0.0016 24 1 0.6174 -4.9204 -0.8924 25 1 0.6168 -4.9210 0.8875 26 1 3.1494 -5.7992 -0.0022 27 1 -0.3380 -6.7312 0.0020 28 1 -1.1556 -9.0526 0.0095 29 1 2.8675 -10.4792 -0.0011 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020053302.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:03 Heat of formation + Delta-G solvation = -102.851771 kcal Electronic energy + Delta-G solvation = -17762.348801 eV Core-core repulsion = 14321.231659 eV Total energy + Delta-G solvation = -3441.117142 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 256.076 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.82799 -48.79555 -39.30131 -38.26330 -35.13427 -34.01924 -31.47116 -30.81473 -29.53283 -26.69368 -24.59575 -23.05469 -21.90262 -19.61061 -18.36931 -18.07346 -17.57290 -16.81330 -15.92905 -15.83884 -15.45877 -15.21521 -14.88041 -14.78651 -14.50932 -14.35858 -13.98985 -13.60784 -12.98661 -12.83680 -12.30982 -12.15939 -11.83845 -11.67163 -11.33874 -11.17647 -10.50411 -10.36978 -10.01025 -9.69394 -9.06953 -8.71546 -8.17335 -7.33158 -6.58230 -4.00160 0.99357 1.20124 3.07399 3.18388 3.22720 3.36491 3.44590 3.65658 4.00177 4.06961 4.43924 4.58722 4.73268 4.83230 5.09340 5.14603 5.43461 5.57791 5.74715 5.82566 5.89413 5.98003 5.99955 6.11641 6.65980 7.19564 7.40294 7.79125 7.88724 8.37990 8.98490 9.31197 9.79383 10.58585 Molecular weight = 256.08amu Principal moments of inertia in cm(-1) A = 0.049290 B = 0.003836 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.934645 B = 7297.523435 C = 7850.308623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.427 3.573 11 O -0.593 6.593 12 C 0.111 3.889 13 N -0.716 5.716 14 C 0.195 3.805 15 C -0.156 4.156 16 C -0.105 4.105 17 C 0.049 3.951 18 F -0.143 7.143 19 C -0.138 4.138 20 C 0.041 3.959 21 F -0.135 7.135 22 H 0.275 0.725 23 H 0.395 0.605 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.417 0.583 27 H 0.143 0.857 28 H 0.139 0.861 29 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.644 -14.574 0.008 14.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.212 3.788 11 O -0.479 6.479 12 C -0.018 4.018 13 N -0.346 5.346 14 C 0.087 3.913 15 C -0.179 4.179 16 C -0.125 4.125 17 C 0.028 3.972 18 F -0.122 7.122 19 C -0.158 4.158 20 C 0.017 3.983 21 F -0.113 7.113 22 H 0.084 0.916 23 H 0.229 0.771 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.256 0.744 27 H 0.161 0.839 28 H 0.157 0.843 29 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.066 -14.212 0.014 14.362 hybrid contribution 0.253 0.746 -0.014 0.788 sum -1.813 -13.467 0.000 13.588 Atomic orbital electron populations 1.69601 1.06006 1.28601 1.49313 1.25325 0.95693 0.99967 0.96689 0.85801 0.79259 0.80384 0.78549 1.20216 1.20744 1.19291 1.19733 0.93500 0.81960 1.48270 0.87676 1.41786 1.09393 1.04467 1.62725 1.19663 0.88350 0.84870 0.85881 1.90528 1.13738 1.86657 1.56968 1.21031 0.92049 0.86390 1.02286 1.44548 1.10413 1.00526 1.79111 1.17952 0.92762 0.84663 0.95896 1.20447 0.92748 0.97070 1.07655 1.20923 0.99988 0.91201 1.00383 1.16981 0.91426 0.79042 1.09777 1.91468 1.89546 1.36528 1.94676 1.20749 0.95161 0.95958 1.03921 1.16714 0.77364 0.91987 1.12225 1.91489 1.30363 1.94898 1.94587 0.91551 0.77104 0.90196 0.90186 0.74350 0.83909 0.84319 0.83875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.20 13.05 55.50 0.72 -22.47 15 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 15 3 Si 0.93 20.22 29.55 -169.99 -5.02 15.20 15 4 H -0.28 -5.93 7.11 56.52 0.40 -5.53 15 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 15 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 7 C -0.31 -8.14 9.68 -14.93 -0.14 -8.28 15 8 H 0.11 2.95 7.16 -52.49 -0.38 2.58 15 9 N -0.55 -13.08 5.29 -10.96 -0.06 -13.14 15 10 C 0.43 9.46 7.85 -10.99 -0.09 9.37 15 11 O -0.59 -15.29 15.24 5.54 0.08 -15.21 15 12 C 0.11 1.79 5.40 -5.20 -0.03 1.76 15 13 N -0.72 -11.57 5.71 -59.72 -0.34 -11.91 15 14 C 0.20 2.74 6.66 -83.62 -0.56 2.18 15 15 C -0.16 -1.81 9.31 -39.40 -0.37 -2.18 15 16 C -0.11 -1.12 10.02 -39.53 -0.40 -1.51 15 17 C 0.05 0.58 7.30 -39.42 -0.29 0.29 15 18 F -0.14 -1.70 17.26 2.25 0.04 -1.66 15 19 C -0.14 -1.64 10.00 -39.48 -0.39 -2.04 15 20 C 0.04 0.57 7.31 -39.26 -0.29 0.28 15 21 F -0.13 -2.02 16.64 2.25 0.04 -1.98 15 22 H 0.27 6.73 8.31 -40.82 -0.34 6.39 15 23 H 0.40 8.85 7.90 -40.82 -0.32 8.53 15 24 H 0.08 1.13 7.96 -51.93 -0.41 0.72 15 25 H 0.08 1.13 7.95 -51.93 -0.41 0.72 15 26 H 0.42 7.53 6.93 -40.82 -0.28 7.25 15 27 H 0.14 1.43 6.74 -52.48 -0.35 1.08 15 28 H 0.14 1.13 8.06 -52.49 -0.42 0.71 15 29 H 0.14 1.44 8.06 -52.49 -0.42 1.02 15 LS Contribution 272.14 15.07 4.10 4.10 Total: -1.00 -28.97 272.14 -5.22 -34.19 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -2.14 Total: 12.44 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -2.64 Total: 0.44 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 0.33 Total: -47.52 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: 0.08 Total: -15.21 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.08 Total: -3.65 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.97 -5.22 -34.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020053302.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.664 kcal (2) G-P(sol) polarization free energy of solvation -28.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds