Wall clock time and date at job start Mon Mar 30 2020 04:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 119.99858 * 2 1 4 4 H 1.48498 * 109.47362 * 269.99967 * 3 2 1 5 5 H 1.48499 * 109.47417 * 30.00394 * 3 2 1 6 6 H 1.48504 * 109.46923 * 150.00133 * 3 2 1 7 7 C 1.38953 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00176 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99904 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00138 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99913 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00449 * 179.97438 * 10 9 7 13 13 N 1.46494 * 109.47101 * 179.97438 * 12 10 9 14 14 C 1.39995 * 119.99770 * 180.02562 * 13 12 10 15 15 C 1.38793 * 120.05727 * 359.72567 * 14 13 12 16 16 C 1.38169 * 119.97888 * 180.27904 * 15 14 13 17 17 C 1.38453 * 120.08535 * 359.97438 * 16 15 14 18 18 F 1.35095 * 119.94760 * 180.02562 * 17 16 15 19 19 C 1.38474 * 120.11034 * 0.02562 * 17 16 15 20 20 C 1.38287 * 120.02188 * 0.02562 * 19 17 16 21 21 F 1.35102 * 120.04217 * 179.97438 * 20 19 17 22 22 H 0.96995 * 120.00236 * 0.02562 * 1 2 3 23 23 H 0.97003 * 120.00158 * 359.97438 * 9 7 2 24 24 H 1.09004 * 109.46706 * 59.99539 * 12 10 9 25 25 H 1.08995 * 109.47231 * 299.99818 * 12 10 9 26 26 H 0.96997 * 120.00606 * 0.02562 * 13 12 10 27 27 H 1.08008 * 120.01183 * 0.25051 * 15 14 13 28 28 H 1.07997 * 119.95610 * 180.02562 * 16 15 14 29 29 H 1.07994 * 119.98465 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9972 -3.5578 -0.0016 11 8 3.2102 -3.5579 -0.0011 12 6 1.2438 -4.8630 -0.0022 13 7 2.1958 -5.9764 -0.0027 14 6 1.7291 -7.2963 -0.0038 15 6 0.3648 -7.5513 0.0013 16 6 -0.0939 -8.8546 0.0060 17 6 0.8057 -9.9070 0.0051 18 9 0.3541 -11.1802 0.0092 19 6 2.1676 -9.6568 0.0000 20 6 2.6317 -8.3541 -0.0036 21 9 3.9604 -8.1095 -0.0081 22 1 -0.4850 0.8400 -0.0004 23 1 0.3534 -2.3907 -0.0016 24 1 0.6174 -4.9204 -0.8924 25 1 0.6168 -4.9210 0.8875 26 1 3.1494 -5.7992 -0.0022 27 1 -0.3380 -6.7312 0.0020 28 1 -1.1556 -9.0526 0.0095 29 1 2.8675 -10.4792 -0.0011 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020053302.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:03 Heat of formation + Delta-G solvation = -122.111847 kcal Electronic energy + Delta-G solvation = -17763.183981 eV Core-core repulsion = 14321.231659 eV Total energy + Delta-G solvation = -3441.952322 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 256.076 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.88779 -49.75344 -40.60866 -39.72341 -36.49154 -35.77063 -33.38892 -31.74315 -30.73403 -28.08429 -26.25251 -24.09088 -22.94439 -21.26018 -20.07937 -19.33314 -18.73021 -17.91174 -17.18498 -16.96909 -16.83798 -16.39996 -16.31808 -16.13792 -16.03099 -15.46378 -15.22213 -14.98990 -14.31547 -14.04700 -13.75648 -13.54407 -13.16570 -13.05017 -12.85159 -12.47354 -12.25657 -12.13898 -11.58944 -11.05513 -10.56342 -10.10112 -9.99590 -8.52532 -8.41765 -6.01904 0.06763 0.23528 1.35318 1.42122 1.53730 1.91561 2.10487 2.33575 2.50768 3.03512 3.12781 3.14972 3.48823 3.68450 3.98177 4.15677 4.22922 4.39602 4.48015 4.56502 4.90352 4.98982 5.07406 5.18735 5.37049 5.68381 5.89017 6.13695 6.49221 6.52989 7.04211 7.44264 7.97276 8.64002 Molecular weight = 256.08amu Principal moments of inertia in cm(-1) A = 0.049290 B = 0.003836 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.934645 B = 7297.523435 C = 7850.308623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.007 4.007 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.339 4.339 8 H 0.080 0.920 9 N -0.558 5.558 10 C 0.426 3.574 11 O -0.634 6.634 12 C 0.126 3.874 13 N -0.732 5.732 14 C 0.178 3.822 15 C -0.149 4.149 16 C -0.094 4.094 17 C 0.048 3.952 18 F -0.143 7.143 19 C -0.136 4.136 20 C 0.021 3.979 21 F -0.149 7.149 22 H 0.280 0.720 23 H 0.402 0.598 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.404 0.596 27 H 0.164 0.836 28 H 0.170 0.830 29 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.333 -15.251 -0.003 15.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.208 4.208 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.468 4.468 8 H 0.098 0.902 9 N -0.194 5.194 10 C 0.214 3.786 11 O -0.522 6.522 12 C -0.002 4.002 13 N -0.362 5.362 14 C 0.072 3.928 15 C -0.172 4.172 16 C -0.113 4.113 17 C 0.027 3.973 18 F -0.122 7.122 19 C -0.156 4.156 20 C -0.003 4.003 21 F -0.128 7.128 22 H 0.090 0.910 23 H 0.237 0.763 24 H 0.126 0.874 25 H 0.126 0.874 26 H 0.241 0.759 27 H 0.182 0.818 28 H 0.188 0.812 29 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.805 -14.930 0.001 15.407 hybrid contribution 0.757 0.807 -0.011 1.107 sum -3.048 -14.123 -0.009 14.448 Atomic orbital electron populations 1.69646 1.06716 1.29618 1.49202 1.26037 0.96571 1.02395 0.95832 0.84930 0.77892 0.76858 0.78691 1.19611 1.19396 1.19916 1.19659 0.92785 0.83832 1.50536 0.90242 1.41807 1.09621 1.04420 1.63527 1.20697 0.88171 0.86387 0.83349 1.90503 1.15998 1.87650 1.58042 1.20968 0.91417 0.82942 1.04836 1.44511 1.09596 1.01330 1.80742 1.18182 0.93877 0.83596 0.97105 1.20723 0.91855 0.98233 1.06381 1.21244 1.01408 0.90251 0.98391 1.17143 0.91476 0.79359 1.09316 1.91476 1.89475 1.36616 1.94632 1.20891 0.95895 0.95641 1.03216 1.16972 0.76915 0.92827 1.13622 1.91449 1.31414 1.95051 1.94864 0.91014 0.76347 0.87442 0.87429 0.75903 0.81806 0.81216 0.82470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.68 13.05 21.66 0.28 -46.40 15 2 C -0.01 -0.37 5.50 84.93 0.47 0.09 15 3 Si 0.99 41.28 29.55 68.60 2.03 43.31 15 4 H -0.27 -10.96 7.11 99.48 0.71 -10.26 15 5 H -0.27 -10.58 7.11 99.48 0.71 -9.87 15 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 15 7 C -0.34 -18.40 9.68 84.04 0.81 -17.59 15 8 H 0.08 4.65 7.16 -2.91 -0.02 4.62 15 9 N -0.56 -26.76 5.29 -306.99 -1.62 -28.38 15 10 C 0.43 18.97 7.85 87.66 0.69 19.66 15 11 O -0.63 -33.60 15.24 -3.08 -0.05 -33.65 15 12 C 0.13 3.86 5.40 85.63 0.46 4.32 15 13 N -0.73 -23.13 5.71 -342.84 -1.96 -25.09 15 14 C 0.18 4.73 6.66 38.17 0.25 4.99 15 15 C -0.15 -2.99 9.31 22.39 0.21 -2.79 15 16 C -0.09 -1.64 10.02 22.30 0.22 -1.42 15 17 C 0.05 1.00 7.30 22.38 0.16 1.16 15 18 F -0.14 -3.01 17.26 44.97 0.78 -2.24 15 19 C -0.14 -3.04 10.00 22.34 0.22 -2.82 15 20 C 0.02 0.56 7.31 22.48 0.16 0.72 15 21 F -0.15 -4.55 16.64 44.97 0.75 -3.80 15 22 H 0.28 13.43 8.31 -92.71 -0.77 12.66 15 23 H 0.40 17.85 7.90 -92.71 -0.73 17.12 15 24 H 0.11 2.73 7.96 -2.38 -0.02 2.71 15 25 H 0.11 2.74 7.95 -2.39 -0.02 2.72 15 26 H 0.40 14.91 6.93 -92.71 -0.64 14.27 15 27 H 0.16 2.57 6.74 -2.91 -0.02 2.55 15 28 H 0.17 1.94 8.06 -2.91 -0.02 1.91 15 29 H 0.16 2.94 8.06 -2.91 -0.02 2.91 15 Total: -1.00 -63.14 272.14 3.72 -59.42 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: -0.15 Total: 30.49 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 3.67 Total: 6.34 kcal Atomic # 7 Polarization: -96.57 SS G_CDS: -3.30 Total: -99.87 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -0.05 Total: -33.65 kcal Atomic # 9 Polarization: -7.56 SS G_CDS: 1.52 Total: -6.03 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -63.14 3.72 -59.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020053302.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.695 kcal (2) G-P(sol) polarization free energy of solvation -63.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds