Wall clock time and date at job start Mon Mar 30 2020 04:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35897 * 116.99608 * 2 1 4 4 C 1.38750 * 120.05743 * 0.02562 * 3 2 1 5 5 C 1.38128 * 119.94146 * 179.97438 * 4 3 2 6 6 C 1.38277 * 120.05976 * 0.02562 * 5 4 3 7 7 C 1.50705 * 119.94751 * 179.97438 * 6 5 4 8 8 C 1.38248 * 120.11159 * 359.74388 * 6 5 4 9 9 C 1.38169 * 120.05178 * 0.51144 * 8 6 5 10 10 S 1.76206 * 120.02559 * 179.76881 * 9 8 6 11 11 O 1.42099 * 106.40297 * 1.18265 * 10 9 8 12 12 O 1.42096 * 106.40129 * 228.25832 * 10 9 8 13 13 C 1.76198 * 107.21521 * 114.72211 * 10 9 8 14 14 H 1.08004 * 120.00524 * 0.27575 * 13 10 9 15 15 C 1.37885 * 119.99742 * 179.97438 * 13 10 9 16 16 N 1.31514 * 120.00035 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99853 * 179.97438 * 15 13 10 18 18 H 1.48494 * 109.47228 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46793 * 120.00131 * 17 15 13 20 20 H 1.48500 * 109.47000 * 240.00224 * 17 15 13 21 21 H 1.08998 * 109.47341 * 59.99912 * 1 2 3 22 22 H 1.09002 * 109.46858 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47377 * 299.99654 * 1 2 3 24 24 H 1.07996 * 120.02790 * 359.97438 * 4 3 2 25 25 H 1.08009 * 119.96960 * 180.02562 * 5 4 3 26 26 H 1.09005 * 109.46849 * 89.99734 * 7 6 5 27 27 H 1.08997 * 109.46876 * 210.00029 * 7 6 5 28 28 H 1.08995 * 109.46714 * 330.00106 * 7 6 5 29 29 H 1.08001 * 119.97525 * 180.25505 * 8 6 5 30 30 H 0.97000 * 119.99706 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3017 3.6759 0.0005 7 6 3.9859 5.0187 0.0005 8 6 4.0559 2.5172 0.0048 9 6 3.4310 1.2849 -0.0010 10 16 4.3930 -0.1914 -0.0017 11 8 5.7538 0.2163 0.0326 12 8 3.8554 -1.0201 -1.0232 13 6 4.0823 -1.0170 1.5235 14 1 3.3980 -0.5877 2.2404 15 6 4.7080 -2.2144 1.7993 16 7 5.5371 -2.7399 0.9241 17 14 4.3792 -3.0893 3.4167 18 1 3.4157 -2.2962 4.2215 19 1 3.8086 -4.4332 3.1453 20 1 5.6515 -3.2343 4.1686 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 0.2127 2.3203 0.0005 25 1 1.3338 4.5114 0.0019 26 1 4.1512 5.3422 1.0283 27 1 4.9436 4.9384 -0.5137 28 1 3.3576 5.7464 -0.5129 29 1 5.1343 2.5753 0.0085 30 1 5.9776 -3.5820 1.1182 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020223236.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:05 Heat of formation + Delta-G solvation = -102.780545 kcal Electronic energy + Delta-G solvation = -17271.415517 eV Core-core repulsion = 14351.849099 eV Total energy + Delta-G solvation = -2919.566418 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.060 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.82567 -37.39870 -35.00803 -33.81464 -33.00521 -31.83637 -30.88544 -27.63205 -26.05359 -25.69401 -22.78312 -21.15735 -18.62662 -18.00134 -16.77299 -16.03502 -15.81060 -15.42365 -14.81755 -14.15092 -13.93884 -13.87360 -13.65852 -13.48778 -13.35838 -12.14095 -12.04712 -11.94081 -11.82996 -11.40390 -11.17511 -11.14634 -10.94673 -10.62645 -10.52583 -10.13810 -10.03223 -9.44705 -9.17651 -8.96512 -8.61704 -7.83008 -6.62621 -5.21174 1.32464 1.68730 2.28756 3.10821 3.18344 3.26527 3.58618 3.84050 4.14714 4.72171 4.93692 4.99865 5.18148 5.30696 5.36002 5.44887 5.53611 5.56086 5.71601 5.74174 5.93122 5.95167 6.05902 6.18981 6.33086 6.44624 6.73393 7.02334 7.13307 7.39475 7.63366 8.06003 8.96125 10.32580 Molecular weight = 256.06amu Principal moments of inertia in cm(-1) A = 0.023558 B = 0.008733 C = 0.007601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.283156 B = 3205.566284 C = 3682.672058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.287 6.287 3 C 0.214 3.786 4 C -0.234 4.234 5 C -0.047 4.047 6 C -0.156 4.156 7 C -0.105 4.105 8 C 0.006 3.994 9 C -0.673 4.673 10 S 2.611 3.389 11 O -0.990 6.990 12 O -0.975 6.975 13 C -0.988 4.988 14 H 0.102 0.898 15 C 0.132 3.868 16 N -0.846 5.846 17 Si 0.922 3.078 18 H -0.262 1.262 19 H -0.271 1.271 20 H -0.271 1.271 21 H 0.054 0.946 22 H 0.103 0.897 23 H 0.054 0.946 24 H 0.130 0.870 25 H 0.123 0.877 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.146 0.854 30 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.687 10.064 0.506 13.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.198 6.198 3 C 0.166 3.834 4 C -0.253 4.253 5 C -0.065 4.065 6 C -0.157 4.157 7 C -0.162 4.162 8 C -0.013 4.013 9 C -0.754 4.754 10 S 2.791 3.209 11 O -0.987 6.987 12 O -0.972 6.972 13 C -1.122 5.122 14 H 0.120 0.880 15 C -0.085 4.085 16 N -0.476 5.476 17 Si 0.746 3.254 18 H -0.186 1.186 19 H -0.196 1.196 20 H -0.196 1.196 21 H 0.072 0.928 22 H 0.122 0.878 23 H 0.072 0.928 24 H 0.148 0.852 25 H 0.141 0.859 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.164 0.836 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.993 9.548 -0.260 12.455 hybrid contribution -1.080 0.035 1.381 1.754 sum -9.074 9.583 1.121 13.245 Atomic orbital electron populations 1.23109 0.78673 1.04330 1.00806 1.86385 1.21121 1.25612 1.86730 1.18430 0.90897 0.84697 0.89371 1.21231 0.99828 0.92501 1.11741 1.20894 0.93969 0.96749 0.94857 1.19877 0.93780 0.95610 1.06481 1.20680 1.00331 0.93097 1.02058 1.20790 1.00514 0.89688 0.90267 1.30900 1.04443 1.21432 1.18663 1.00850 0.72123 0.71162 0.76719 1.93317 1.33260 1.83022 1.89111 1.93346 1.79785 1.64405 1.59705 1.30080 1.38868 1.18231 1.25059 0.87954 1.24750 0.90702 0.94916 0.98149 1.69915 1.23590 1.19247 1.34815 0.86115 0.79071 0.79126 0.81127 1.18623 1.19593 1.19599 0.92777 0.87827 0.92757 0.85248 0.85880 0.91539 0.91455 0.92025 0.83612 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.29 -5.99 9.29 -29.09 -0.27 -6.26 16 3 C 0.21 4.40 6.63 -39.22 -0.26 4.14 16 4 C -0.23 -3.77 9.04 -39.43 -0.36 -4.13 16 5 C -0.05 -0.68 9.69 -39.61 -0.38 -1.07 16 6 C -0.16 -2.50 5.88 -104.60 -0.62 -3.12 16 7 C -0.10 -1.24 10.01 36.01 0.36 -0.88 16 8 C 0.01 0.12 9.20 -39.60 -0.36 -0.25 16 9 C -0.67 -15.42 5.76 -39.43 -0.23 -15.65 16 10 S 2.61 73.35 4.24 -107.50 -0.46 72.89 16 11 O -0.99 -29.44 16.85 -57.17 -0.96 -30.41 16 12 O -0.98 -29.83 17.18 -62.48 -1.07 -30.90 16 13 C -0.99 -28.24 9.58 30.60 0.29 -27.95 16 14 H 0.10 2.72 7.81 -52.48 -0.41 2.31 16 15 C 0.13 3.76 5.46 -17.82 -0.10 3.66 16 16 N -0.85 -25.24 13.19 55.43 0.73 -24.51 16 17 Si 0.92 20.95 29.54 -169.99 -5.02 15.93 16 18 H -0.26 -5.76 7.11 56.52 0.40 -5.35 16 19 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 22 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 23 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 24 H 0.13 1.62 6.30 -52.49 -0.33 1.29 16 25 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 28 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 29 H 0.15 2.78 7.33 -52.49 -0.38 2.40 16 30 H 0.29 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 278.27 15.07 4.19 4.19 Total: -1.00 -36.23 278.27 -6.68 -42.91 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -3.16 Total: 0.03 kcal Atomic # 6 Polarization: -43.22 SS G_CDS: -0.66 Total: -43.88 kcal Atomic # 7 Polarization: -25.24 SS G_CDS: 0.73 Total: -24.51 kcal Atomic # 8 Polarization: -65.25 SS G_CDS: -2.31 Total: -67.56 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 73.35 SS G_CDS: -0.46 Total: 72.89 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -36.23 -6.68 -42.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020223236.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.870 kcal (2) G-P(sol) polarization free energy of solvation -36.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds