Wall clock time and date at job start Mon Mar 30 2020 04:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35897 * 116.99608 * 2 1 4 4 C 1.38750 * 120.05743 * 0.02562 * 3 2 1 5 5 C 1.38128 * 119.94146 * 179.97438 * 4 3 2 6 6 C 1.38277 * 120.05976 * 0.02562 * 5 4 3 7 7 C 1.50705 * 119.94751 * 179.97438 * 6 5 4 8 8 C 1.38248 * 120.11159 * 359.74388 * 6 5 4 9 9 C 1.38169 * 120.05178 * 0.51144 * 8 6 5 10 10 S 1.76206 * 120.02559 * 179.76881 * 9 8 6 11 11 O 1.42099 * 106.40297 * 1.18265 * 10 9 8 12 12 O 1.42096 * 106.40129 * 228.25832 * 10 9 8 13 13 C 1.76198 * 107.21521 * 114.72211 * 10 9 8 14 14 H 1.08004 * 120.00524 * 0.27575 * 13 10 9 15 15 C 1.37885 * 119.99742 * 179.97438 * 13 10 9 16 16 N 1.31514 * 120.00035 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99853 * 179.97438 * 15 13 10 18 18 H 1.48494 * 109.47228 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46793 * 120.00131 * 17 15 13 20 20 H 1.48500 * 109.47000 * 240.00224 * 17 15 13 21 21 H 1.08998 * 109.47341 * 59.99912 * 1 2 3 22 22 H 1.09002 * 109.46858 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47377 * 299.99654 * 1 2 3 24 24 H 1.07996 * 120.02790 * 359.97438 * 4 3 2 25 25 H 1.08009 * 119.96960 * 180.02562 * 5 4 3 26 26 H 1.09005 * 109.46849 * 89.99734 * 7 6 5 27 27 H 1.08997 * 109.46876 * 210.00029 * 7 6 5 28 28 H 1.08995 * 109.46714 * 330.00106 * 7 6 5 29 29 H 1.08001 * 119.97525 * 180.25505 * 8 6 5 30 30 H 0.97000 * 119.99706 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3017 3.6759 0.0005 7 6 3.9859 5.0187 0.0005 8 6 4.0559 2.5172 0.0048 9 6 3.4310 1.2849 -0.0010 10 16 4.3930 -0.1914 -0.0017 11 8 5.7538 0.2163 0.0326 12 8 3.8554 -1.0201 -1.0232 13 6 4.0823 -1.0170 1.5235 14 1 3.3980 -0.5877 2.2404 15 6 4.7080 -2.2144 1.7993 16 7 5.5371 -2.7399 0.9241 17 14 4.3792 -3.0893 3.4167 18 1 3.4157 -2.2962 4.2215 19 1 3.8086 -4.4332 3.1453 20 1 5.6515 -3.2343 4.1686 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 0.2127 2.3203 0.0005 25 1 1.3338 4.5114 0.0019 26 1 4.1512 5.3422 1.0283 27 1 4.9436 4.9384 -0.5137 28 1 3.3576 5.7464 -0.5129 29 1 5.1343 2.5753 0.0085 30 1 5.9776 -3.5820 1.1182 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020223236.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:05 Heat of formation + Delta-G solvation = -130.940317 kcal Electronic energy + Delta-G solvation = -17272.636616 eV Core-core repulsion = 14351.849099 eV Total energy + Delta-G solvation = -2920.787518 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.060 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.19033 -38.74329 -37.23669 -36.06347 -35.17197 -33.09104 -32.22979 -28.79145 -28.23409 -26.83122 -24.24141 -22.47960 -20.69692 -19.50529 -18.73458 -17.75583 -17.40521 -16.79143 -16.68496 -15.85080 -15.71141 -15.40382 -15.20896 -14.78822 -14.54124 -13.99175 -13.38508 -13.21336 -13.11783 -13.01231 -12.96711 -12.60045 -12.42153 -12.32445 -12.31965 -12.26856 -11.81209 -11.25583 -11.24602 -10.82821 -10.31288 -9.17258 -8.74530 -7.45750 -0.10903 0.25680 0.34020 1.32532 1.33634 1.51958 2.21408 2.32434 2.50162 2.59514 3.46216 3.61840 3.81771 3.89424 4.07808 4.19468 4.35424 4.40423 4.43749 4.65512 4.69196 4.73914 4.90034 4.95358 5.09746 5.16120 5.25801 5.28345 5.48968 5.80650 5.88798 6.34186 6.76875 8.23883 Molecular weight = 256.06amu Principal moments of inertia in cm(-1) A = 0.023558 B = 0.008733 C = 0.007601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.283156 B = 3205.566284 C = 3682.672058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.333 6.333 3 C 0.192 3.808 4 C -0.222 4.222 5 C -0.028 4.028 6 C -0.149 4.149 7 C -0.105 4.105 8 C -0.022 4.022 9 C -0.703 4.703 10 S 2.600 3.400 11 O -1.030 7.030 12 O -1.022 7.022 13 C -1.008 5.008 14 H 0.113 0.887 15 C 0.067 3.933 16 N -0.895 5.895 17 Si 0.995 3.005 18 H -0.248 1.248 19 H -0.255 1.255 20 H -0.255 1.255 21 H 0.078 0.922 22 H 0.112 0.888 23 H 0.081 0.919 24 H 0.173 0.827 25 H 0.180 0.820 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.134 0.866 30 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.512 12.526 2.021 17.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.245 6.245 3 C 0.144 3.856 4 C -0.241 4.241 5 C -0.046 4.046 6 C -0.150 4.150 7 C -0.162 4.162 8 C -0.041 4.041 9 C -0.792 4.792 10 S 2.789 3.211 11 O -1.027 7.027 12 O -1.019 7.019 13 C -1.142 5.142 14 H 0.131 0.869 15 C -0.145 4.145 16 N -0.526 5.526 17 Si 0.812 3.188 18 H -0.171 1.171 19 H -0.179 1.179 20 H -0.179 1.179 21 H 0.097 0.903 22 H 0.131 0.869 23 H 0.099 0.901 24 H 0.190 0.810 25 H 0.197 0.803 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.113 0.887 29 H 0.152 0.848 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.781 11.963 1.235 16.151 hybrid contribution -0.319 -0.559 0.851 1.067 sum -11.100 11.403 2.086 16.050 Atomic orbital electron populations 1.23538 0.75545 1.05962 1.03256 1.86320 1.24617 1.26634 1.86945 1.18700 0.90317 0.86312 0.90281 1.21721 1.01735 0.91177 1.09481 1.21584 0.93581 0.98245 0.91188 1.20358 0.94739 0.95812 1.04098 1.20803 1.00618 0.91215 1.03528 1.20904 1.00539 0.90404 0.92209 1.30014 1.05526 1.19461 1.24181 1.00344 0.72014 0.72382 0.76397 1.93246 1.36107 1.83972 1.89400 1.93269 1.80333 1.67232 1.61043 1.30379 1.39302 1.19133 1.25412 0.86892 1.26103 0.89968 0.95696 1.02713 1.70012 1.24896 1.20286 1.37423 0.85055 0.79940 0.78227 0.75587 1.17124 1.17916 1.17912 0.90342 0.86935 0.90055 0.80956 0.80268 0.90001 0.91638 0.88679 0.84824 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 9.81 113.37 1.11 1.39 16 2 O -0.33 -13.94 9.29 -83.14 -0.77 -14.72 16 3 C 0.19 7.80 6.63 22.51 0.15 7.95 16 4 C -0.22 -6.29 9.04 22.37 0.20 -6.08 16 5 C -0.03 -0.68 9.69 22.25 0.22 -0.47 16 6 C -0.15 -4.33 5.88 -19.85 -0.12 -4.45 16 7 C -0.11 -2.07 10.01 71.24 0.71 -1.36 16 8 C -0.02 -0.87 9.20 22.26 0.20 -0.67 16 9 C -0.70 -33.35 5.76 22.37 0.13 -33.22 16 10 S 2.60 155.72 4.24 -56.49 -0.24 155.48 16 11 O -1.03 -66.04 16.85 -128.00 -2.16 -68.20 16 12 O -1.02 -67.06 17.18 -122.93 -2.11 -69.17 16 13 C -1.01 -60.11 9.58 67.74 0.65 -59.46 16 14 H 0.11 6.21 7.81 -2.91 -0.02 6.19 16 15 C 0.07 3.93 5.46 84.66 0.46 4.39 16 16 N -0.89 -55.87 13.19 21.45 0.28 -55.59 16 17 Si 0.99 43.07 29.54 68.60 2.03 45.10 16 18 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 19 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 20 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 21 H 0.08 1.59 7.66 -2.39 -0.02 1.58 16 22 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 23 H 0.08 1.61 7.66 -2.39 -0.02 1.59 16 24 H 0.17 3.30 6.30 -2.91 -0.02 3.28 16 25 H 0.18 2.40 8.06 -2.91 -0.02 2.37 16 26 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.06 1.33 8.09 -2.39 -0.02 1.31 16 28 H 0.09 1.28 8.08 -2.39 -0.02 1.26 16 29 H 0.13 5.46 7.33 -2.91 -0.02 5.44 16 30 H 0.30 16.59 8.31 -92.71 -0.77 15.82 16 Total: -1.00 -86.67 278.27 1.90 -84.77 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 1.15 Total: 14.30 kcal Atomic # 6 Polarization: -95.70 SS G_CDS: 3.72 Total: -91.98 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.28 Total: -55.59 kcal Atomic # 8 Polarization: -147.05 SS G_CDS: -5.04 Total: -152.09 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: 155.72 SS G_CDS: -0.24 Total: 155.48 kcal Total: -86.67 1.90 -84.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020223236.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.166 kcal (2) G-P(sol) polarization free energy of solvation -86.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds