Wall clock time and date at job start Mon Mar 30 2020 04:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35893 * 117.00392 * 2 1 4 4 C 1.38736 * 120.05957 * 180.02562 * 3 2 1 5 5 C 1.38138 * 119.94337 * 180.30421 * 4 3 2 6 6 C 1.38270 * 120.05794 * 359.46080 * 5 4 3 7 7 S 1.76206 * 119.94429 * 180.26125 * 6 5 4 8 8 O 1.42098 * 104.27759 * 26.32594 * 7 6 5 9 9 O 1.42103 * 104.27637 * 154.18185 * 7 6 5 10 10 C 1.81399 * 104.44702 * 270.25333 * 7 6 5 11 11 C 1.50700 * 109.46917 * 179.97438 * 10 7 6 12 12 H 1.08000 * 120.00040 * 0.02562 * 11 10 7 13 13 C 1.37873 * 120.00000 * 180.02562 * 11 10 7 14 14 N 1.31513 * 120.00062 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00123 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47193 * 59.99833 * 15 13 11 17 17 H 1.48502 * 109.47405 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46994 * 299.99777 * 15 13 11 19 19 C 1.38259 * 120.10998 * 0.51383 * 6 5 4 20 20 C 1.38146 * 120.05869 * 359.76954 * 19 6 5 21 21 H 1.08992 * 109.47458 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46729 * 299.99846 * 1 2 3 23 23 H 1.09001 * 109.47001 * 59.99870 * 1 2 3 24 24 H 1.08002 * 120.02291 * 0.02562 * 4 3 2 25 25 H 1.08004 * 119.96766 * 179.69880 * 5 4 3 26 26 H 1.08994 * 109.47263 * 300.00083 * 10 7 6 27 27 H 1.09003 * 109.47133 * 60.00444 * 10 7 6 28 28 H 0.97003 * 120.00289 * 180.02562 * 14 13 11 29 29 H 1.08006 * 119.97187 * 179.74376 * 19 6 5 30 30 H 1.07993 * 120.03340 * 179.97438 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0561 2.5168 0.0058 6 6 3.3020 3.6757 0.0015 7 16 4.1020 5.2457 0.0026 8 8 5.3632 4.9967 -0.6029 9 8 3.1590 6.1200 -0.6019 10 6 4.3076 5.6475 1.7595 11 6 4.9898 6.9847 1.8925 12 1 5.2711 7.5376 1.0084 13 6 5.2548 7.5022 3.1426 14 7 4.9117 6.8291 4.2191 15 14 6.0997 9.1599 3.3074 16 1 5.2707 10.2051 2.6549 17 1 6.2681 9.4890 4.7457 18 1 7.4314 9.1040 2.6527 19 6 1.9212 3.6047 0.0014 20 6 1.2916 2.3751 0.0010 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 4.0209 0.3798 -0.0014 25 1 5.1346 2.5748 0.0103 26 1 3.3300 5.6887 2.2397 27 1 4.9159 4.8805 2.2390 28 1 5.0978 7.1933 5.0987 29 1 1.3343 4.5114 0.0022 30 1 0.2130 2.3202 0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020223286.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:19 Heat of formation + Delta-G solvation = -88.843382 kcal Electronic energy + Delta-G solvation = -16513.324925 eV Core-core repulsion = 13594.362868 eV Total energy + Delta-G solvation = -2918.962057 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.060 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.15658 -37.43063 -36.10849 -34.95076 -33.36443 -31.14221 -30.30140 -29.03080 -27.52562 -23.60601 -22.79731 -22.33397 -18.55812 -18.14613 -17.15716 -16.40560 -16.21684 -15.93972 -15.35699 -14.75558 -14.66195 -14.23540 -13.77688 -13.44333 -13.02344 -12.83361 -12.46121 -12.14610 -12.08115 -11.48339 -11.33097 -11.12679 -11.10420 -10.88461 -10.88287 -10.64252 -10.26591 -9.83888 -9.19911 -9.01260 -8.71727 -8.45392 -6.34194 -4.45541 0.99040 1.25966 1.37506 3.05489 3.24191 3.26482 3.31244 3.58048 3.94451 4.25057 4.66052 4.78518 4.86753 4.90262 4.92350 5.00646 5.16248 5.22495 5.40139 5.48774 5.66881 5.97904 6.03711 6.23353 6.33153 6.69122 6.69855 6.73985 7.22166 7.42752 7.72694 8.56252 9.22306 10.77288 Molecular weight = 256.06amu Principal moments of inertia in cm(-1) A = 0.037229 B = 0.005302 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.923064 B = 5279.350703 C = 5506.349808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.316 6.316 3 C 0.164 3.836 4 C -0.175 4.175 5 C 0.013 3.987 6 C -0.686 4.686 7 S 2.469 3.531 8 O -0.961 6.961 9 O -0.963 6.963 10 C -0.395 4.395 11 C -0.538 4.538 12 H 0.072 0.928 13 C 0.077 3.923 14 N -0.879 5.879 15 Si 0.905 3.095 16 H -0.269 1.269 17 H -0.282 1.282 18 H -0.269 1.269 19 C 0.015 3.985 20 C -0.232 4.232 21 H 0.100 0.900 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.136 0.864 25 H 0.148 0.852 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.269 0.731 29 H 0.144 0.856 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.678 -11.364 -4.901 14.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.229 6.229 3 C 0.118 3.882 4 C -0.194 4.194 5 C -0.005 4.005 6 C -0.770 4.770 7 S 2.653 3.347 8 O -0.959 6.959 9 O -0.960 6.960 10 C -0.530 4.530 11 C -0.577 4.577 12 H 0.090 0.910 13 C -0.129 4.129 14 N -0.515 5.515 15 Si 0.731 3.269 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.193 1.193 19 C -0.004 4.004 20 C -0.251 4.251 21 H 0.118 0.882 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.154 0.846 25 H 0.166 0.834 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.079 0.921 29 H 0.161 0.839 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.409 -11.176 -5.488 14.489 hybrid contribution -0.271 0.210 0.816 0.885 sum -7.680 -10.967 -4.673 14.180 Atomic orbital electron populations 1.23106 0.78179 1.03996 1.01746 1.86074 1.21675 1.27108 1.88050 1.19260 0.92573 0.84030 0.92301 1.20516 0.91315 0.98883 1.08690 1.20826 1.00381 0.90187 0.89155 1.31102 1.04776 1.22435 1.18656 1.06510 0.73903 0.72994 0.81311 1.93448 1.41614 1.84465 1.76359 1.93445 1.62891 1.63229 1.76423 1.27467 1.06907 1.06350 1.12290 1.20333 1.41702 1.01468 0.94149 0.91021 1.24920 0.94651 0.98197 0.95137 1.69944 1.45035 1.38368 0.98143 0.86416 0.80353 0.82686 0.77432 1.19380 1.20729 1.19349 1.20784 0.92755 0.98023 0.88812 1.21308 1.00168 0.92393 1.11278 0.88157 0.92295 0.92407 0.84583 0.83425 0.89391 0.89316 0.92090 0.83870 0.84907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.85 10.50 -19.40 -0.20 -4.06 16 3 C 0.16 2.31 6.69 -39.21 -0.26 2.04 16 4 C -0.17 -2.53 9.99 -39.43 -0.39 -2.92 16 5 C 0.01 0.21 9.46 -39.61 -0.37 -0.16 16 6 C -0.69 -12.30 5.66 -39.56 -0.22 -12.52 16 7 S 2.47 52.57 5.07 -107.50 -0.55 52.02 16 8 O -0.96 -22.36 17.13 -57.54 -0.99 -23.35 16 9 O -0.96 -22.37 17.12 -57.54 -0.99 -23.35 16 10 C -0.39 -9.38 5.74 36.01 0.21 -9.17 16 11 C -0.54 -14.60 9.13 -34.44 -0.31 -14.92 16 12 H 0.07 1.90 7.71 -52.49 -0.40 1.49 16 13 C 0.08 2.10 5.46 -17.82 -0.10 2.00 16 14 N -0.88 -24.54 13.29 55.43 0.74 -23.80 16 15 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 16 16 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 19 C 0.01 0.24 9.46 -39.61 -0.37 -0.13 16 20 C -0.23 -3.21 9.04 -39.43 -0.36 -3.56 16 21 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 23 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 24 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 25 H 0.15 2.22 7.57 -52.48 -0.40 1.82 16 26 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 27 H 0.09 2.07 8.14 -51.92 -0.42 1.65 16 28 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.14 2.15 7.57 -52.48 -0.40 1.75 16 30 H 0.13 1.40 6.30 -52.49 -0.33 1.07 16 LS Contribution 279.66 15.07 4.21 4.21 Total: -1.00 -33.28 279.66 -7.14 -40.42 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -3.15 Total: 0.41 kcal Atomic # 6 Polarization: -36.95 SS G_CDS: -1.20 Total: -38.15 kcal Atomic # 7 Polarization: -24.54 SS G_CDS: 0.74 Total: -23.80 kcal Atomic # 8 Polarization: -48.58 SS G_CDS: -2.17 Total: -50.76 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 52.57 SS G_CDS: -0.55 Total: 52.02 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -33.28 -7.14 -40.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020223286.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.421 kcal (2) G-P(sol) polarization free energy of solvation -33.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds