Wall clock time and date at job start Mon Mar 30 2020 04:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35893 * 117.00392 * 2 1 4 4 C 1.38736 * 120.05957 * 180.02562 * 3 2 1 5 5 C 1.38138 * 119.94337 * 180.30421 * 4 3 2 6 6 C 1.38270 * 120.05794 * 359.46080 * 5 4 3 7 7 S 1.76206 * 119.94429 * 180.26125 * 6 5 4 8 8 O 1.42098 * 104.27759 * 26.32594 * 7 6 5 9 9 O 1.42103 * 104.27637 * 154.18185 * 7 6 5 10 10 C 1.81399 * 104.44702 * 270.25333 * 7 6 5 11 11 C 1.50700 * 109.46917 * 179.97438 * 10 7 6 12 12 H 1.08000 * 120.00040 * 0.02562 * 11 10 7 13 13 C 1.37873 * 120.00000 * 180.02562 * 11 10 7 14 14 N 1.31513 * 120.00062 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00123 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47193 * 59.99833 * 15 13 11 17 17 H 1.48502 * 109.47405 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46994 * 299.99777 * 15 13 11 19 19 C 1.38259 * 120.10998 * 0.51383 * 6 5 4 20 20 C 1.38146 * 120.05869 * 359.76954 * 19 6 5 21 21 H 1.08992 * 109.47458 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46729 * 299.99846 * 1 2 3 23 23 H 1.09001 * 109.47001 * 59.99870 * 1 2 3 24 24 H 1.08002 * 120.02291 * 0.02562 * 4 3 2 25 25 H 1.08004 * 119.96766 * 179.69880 * 5 4 3 26 26 H 1.08994 * 109.47263 * 300.00083 * 10 7 6 27 27 H 1.09003 * 109.47133 * 60.00444 * 10 7 6 28 28 H 0.97003 * 120.00289 * 180.02562 * 14 13 11 29 29 H 1.08006 * 119.97187 * 179.74376 * 19 6 5 30 30 H 1.07993 * 120.03340 * 179.97438 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0561 2.5168 0.0058 6 6 3.3020 3.6757 0.0015 7 16 4.1020 5.2457 0.0026 8 8 5.3632 4.9967 -0.6029 9 8 3.1590 6.1200 -0.6019 10 6 4.3076 5.6475 1.7595 11 6 4.9898 6.9847 1.8925 12 1 5.2711 7.5376 1.0084 13 6 5.2548 7.5022 3.1426 14 7 4.9117 6.8291 4.2191 15 14 6.0997 9.1599 3.3074 16 1 5.2707 10.2051 2.6549 17 1 6.2681 9.4890 4.7457 18 1 7.4314 9.1040 2.6527 19 6 1.9212 3.6047 0.0014 20 6 1.2916 2.3751 0.0010 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 4.0209 0.3798 -0.0014 25 1 5.1346 2.5748 0.0103 26 1 3.3300 5.6887 2.2397 27 1 4.9159 4.8805 2.2390 28 1 5.0978 7.1933 5.0987 29 1 1.3343 4.5114 0.0022 30 1 0.2130 2.3202 0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020223286.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:19 Heat of formation + Delta-G solvation = -112.731424 kcal Electronic energy + Delta-G solvation = -16514.360789 eV Core-core repulsion = 13594.362868 eV Total energy + Delta-G solvation = -2919.997921 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.060 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.19357 -38.50622 -37.90818 -36.75732 -35.39362 -32.28515 -31.47470 -30.99320 -28.29160 -25.56925 -24.00802 -23.50062 -19.99780 -19.38954 -18.96247 -17.98055 -17.47728 -17.22944 -16.76096 -16.35677 -16.07067 -15.78644 -14.85383 -14.62526 -14.47428 -14.16876 -14.02750 -13.89555 -13.40514 -12.98363 -12.96259 -12.81499 -12.69230 -12.51757 -12.27410 -11.98222 -11.86961 -11.70864 -11.01000 -10.75775 -10.18106 -9.62055 -8.39284 -6.57902 -0.58828 -0.11152 0.21347 1.40931 1.44051 1.52212 2.15782 2.26979 2.33927 2.45898 2.94870 3.15346 3.38722 3.67955 3.80761 4.17644 4.26299 4.37804 4.40754 4.47709 4.70376 4.78962 4.80249 4.84699 4.92261 5.08690 5.14598 5.35175 5.54674 5.72736 6.23604 6.51882 7.13775 8.72958 Molecular weight = 256.06amu Principal moments of inertia in cm(-1) A = 0.037229 B = 0.005302 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.923064 B = 5279.350703 C = 5506.349808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.321 6.321 3 C 0.172 3.828 4 C -0.177 4.177 5 C 0.000 4.000 6 C -0.701 4.701 7 S 2.499 3.501 8 O -0.986 6.986 9 O -0.986 6.986 10 C -0.409 4.409 11 C -0.570 4.570 12 H 0.068 0.932 13 C 0.027 3.973 14 N -0.909 5.909 15 Si 0.963 3.037 16 H -0.262 1.262 17 H -0.270 1.270 18 H -0.262 1.262 19 C 0.001 3.999 20 C -0.226 4.226 21 H 0.127 0.873 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.161 0.839 25 H 0.152 0.848 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.274 0.726 29 H 0.149 0.851 30 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.821 -12.652 -5.173 16.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.234 6.234 3 C 0.125 3.875 4 C -0.196 4.196 5 C -0.019 4.019 6 C -0.790 4.790 7 S 2.687 3.313 8 O -0.983 6.983 9 O -0.983 6.983 10 C -0.543 4.543 11 C -0.608 4.608 12 H 0.086 0.914 13 C -0.176 4.176 14 N -0.545 5.545 15 Si 0.786 3.214 16 H -0.187 1.187 17 H -0.194 1.194 18 H -0.187 1.187 19 C -0.018 4.018 20 C -0.245 4.245 21 H 0.145 0.855 22 H 0.087 0.913 23 H 0.088 0.912 24 H 0.179 0.821 25 H 0.170 0.830 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.166 0.834 30 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -8.535 -12.419 -5.746 16.127 hybrid contribution -0.065 0.382 0.869 0.952 sum -8.600 -12.037 -4.877 15.577 Atomic orbital electron populations 1.23510 0.75731 1.06246 1.02818 1.86090 1.24146 1.25889 1.87265 1.19414 0.92659 0.84910 0.90548 1.20774 0.92158 0.98894 1.07811 1.20977 1.00764 0.90511 0.89599 1.30398 1.05669 1.20287 1.22612 1.05070 0.73259 0.73821 0.79193 1.93403 1.43448 1.85370 1.76123 1.93401 1.63297 1.65481 1.76166 1.27520 1.06236 1.05097 1.15456 1.20781 1.42426 1.03130 0.94491 0.91432 1.25814 0.95147 1.01828 0.94799 1.70022 1.45899 1.39981 0.98631 0.85518 0.79480 0.78377 0.78073 1.18665 1.19436 1.18677 1.20989 0.92060 0.99551 0.89160 1.21622 1.01991 0.91181 1.09725 0.85537 0.91308 0.91166 0.82133 0.83042 0.89743 0.89743 0.91669 0.83354 0.81399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.32 -6.67 10.50 -92.34 -0.97 -7.64 16 3 C 0.17 4.32 6.69 22.51 0.15 4.47 16 4 C -0.18 -4.75 9.99 22.37 0.22 -4.53 16 5 C 0.00 0.01 9.46 22.25 0.21 0.22 16 6 C -0.70 -25.05 5.66 22.28 0.13 -24.92 16 7 S 2.50 109.20 5.07 -56.49 -0.29 108.92 16 8 O -0.99 -47.00 17.13 -127.65 -2.19 -49.19 16 9 O -0.99 -46.78 17.12 -127.65 -2.19 -48.96 16 10 C -0.41 -20.19 5.74 71.24 0.41 -19.79 16 11 C -0.57 -31.82 9.13 25.60 0.23 -31.59 16 12 H 0.07 3.70 7.71 -2.91 -0.02 3.67 16 13 C 0.03 1.51 5.46 84.65 0.46 1.97 16 14 N -0.91 -51.51 13.29 21.45 0.28 -51.23 16 15 Si 0.96 42.40 29.54 68.60 2.03 44.42 16 16 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 17 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 18 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 19 C 0.00 0.04 9.46 22.25 0.21 0.25 16 20 C -0.23 -5.61 9.04 22.37 0.20 -5.41 16 21 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 23 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16 24 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 25 H 0.15 4.56 7.57 -2.91 -0.02 4.54 16 26 H 0.08 4.12 8.14 -2.39 -0.02 4.10 16 27 H 0.08 4.14 8.14 -2.39 -0.02 4.12 16 28 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 29 H 0.15 4.35 7.57 -2.91 -0.02 4.33 16 30 H 0.17 2.87 6.30 -2.91 -0.02 2.85 16 Total: -1.00 -71.50 279.66 1.17 -70.33 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 1.15 Total: 11.42 kcal Atomic # 6 Polarization: -81.42 SS G_CDS: 3.34 Total: -78.08 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 0.28 Total: -51.23 kcal Atomic # 8 Polarization: -100.44 SS G_CDS: -5.34 Total: -105.79 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: 109.20 SS G_CDS: -0.29 Total: 108.92 kcal Total: -71.50 1.17 -70.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020223286.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.402 kcal (2) G-P(sol) polarization free energy of solvation -71.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds