Wall clock time and date at job start Mon Mar 30 2020 04:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46897 * 111.00201 * 2 1 4 4 C 1.50695 * 109.47652 * 66.04235 * 3 2 1 5 5 H 1.08012 * 119.99540 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00417 * 179.97438 * 4 3 2 7 7 N 1.31507 * 119.99633 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99898 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47249 * 60.00298 * 8 6 4 10 10 H 1.48505 * 109.47085 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47439 * 300.00366 * 8 6 4 12 12 C 1.46902 * 111.00261 * 236.03974 * 2 1 3 13 13 C 1.50698 * 109.46999 * 293.95725 * 12 2 1 14 14 C 1.34298 * 122.10807 * 95.00112 * 13 12 2 15 15 S 1.71068 * 109.08879 * 179.97438 * 14 13 12 16 16 C 1.76099 * 90.30128 * 359.97438 * 15 14 13 17 17 C 1.47103 * 125.54073 * 179.97438 * 16 15 14 18 18 O 1.21541 * 119.99801 * 180.02562 * 17 16 15 19 19 O 1.34817 * 120.00123 * 0.02562 * 17 16 15 20 20 N 1.30605 * 108.91508 * 0.02562 * 16 15 14 21 21 H 1.08995 * 109.47151 * 183.95768 * 1 2 3 22 22 H 1.09001 * 109.47073 * 303.95919 * 1 2 3 23 23 H 1.09000 * 109.47227 * 63.95747 * 1 2 3 24 24 H 1.09003 * 109.47247 * 186.04906 * 3 2 1 25 25 H 1.09000 * 109.46972 * 306.03969 * 3 2 1 26 26 H 0.97006 * 119.99842 * 180.02562 * 7 6 4 27 27 H 1.08995 * 109.47480 * 173.95129 * 12 2 1 28 28 H 1.09006 * 109.46330 * 53.95495 * 12 2 1 29 29 H 1.08002 * 125.45448 * 0.02562 * 14 13 12 30 30 H 0.96699 * 117.00479 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5113 2.0487 6 6 2.0277 3.3492 1.5287 7 7 2.7129 4.0015 0.6152 8 14 1.5826 4.1870 3.1379 9 1 2.1733 3.4295 4.2703 10 1 2.1150 5.5734 3.1379 11 1 0.1054 4.2246 3.2844 12 6 1.9955 -0.7661 -1.1375 13 6 1.6369 -2.2205 -0.9726 14 6 0.5463 -2.7561 -1.5447 15 16 0.4620 -4.4167 -1.1427 16 6 1.9452 -4.2743 -0.2042 17 6 2.6009 -5.3675 0.5300 18 8 3.6259 -5.1556 1.1478 19 8 2.0649 -6.6045 0.5175 20 7 2.3679 -3.0400 -0.2650 21 1 -0.3633 -1.0252 0.0709 22 1 -0.3633 0.5741 0.8524 23 1 -0.3634 0.4512 -0.9233 24 1 3.0797 1.3443 -0.1083 25 1 1.5612 1.9273 -0.8310 26 1 2.9882 4.9174 0.7775 27 1 3.0797 -0.6612 -1.1756 28 1 1.5611 -0.3873 -2.0627 29 1 -0.1634 -2.2238 -2.1607 30 1 2.5317 -7.2903 1.0142 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036902714.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:06 Heat of formation + Delta-G solvation = -31.036755 kcal Electronic energy + Delta-G solvation = -16219.690849 eV Core-core repulsion = 13335.528226 eV Total energy + Delta-G solvation = -2884.162623 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.067 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.56826 -39.63907 -36.46496 -36.16830 -32.64794 -31.05702 -27.68107 -27.22945 -26.61383 -24.11272 -22.04075 -20.50952 -19.62891 -18.66336 -17.74579 -16.85214 -16.33440 -16.11341 -15.14544 -14.68398 -14.51566 -14.06155 -13.80368 -13.47329 -13.34891 -12.60381 -11.94835 -11.90138 -11.85291 -11.27758 -11.10019 -11.03803 -10.90920 -10.65684 -10.49846 -9.91952 -9.80153 -9.76059 -9.26881 -8.85975 -8.42242 -7.29887 -6.01837 -4.03006 0.03683 1.04776 1.51432 2.02555 2.38834 2.96222 3.35237 3.39086 3.42839 4.43546 4.52150 4.94136 4.97378 5.10221 5.29359 5.35059 5.75718 5.88511 6.05202 6.11032 6.18853 6.27200 6.68255 7.24417 7.28613 7.46487 7.68854 7.78540 8.05932 8.15740 8.51429 9.03555 9.60925 11.09093 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.031590 B = 0.004596 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.131475 B = 6091.029683 C = 6492.671815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.533 5.533 3 C 0.195 3.805 4 C -0.508 4.508 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.121 3.879 13 C 0.084 3.916 14 C -0.254 4.254 15 S 0.211 5.789 16 C -0.015 4.015 17 C 0.566 3.434 18 O -0.473 6.473 19 O -0.510 6.510 20 N -0.362 5.362 21 H 0.041 0.959 22 H 0.077 0.923 23 H 0.013 0.987 24 H 0.033 0.967 25 H -0.007 1.007 26 H 0.262 0.738 27 H 0.090 0.910 28 H 0.046 0.954 29 H 0.186 0.814 30 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.906 -19.236 -5.867 20.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.258 5.258 3 C 0.070 3.930 4 C -0.546 4.546 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.203 1.203 12 C -0.010 4.010 13 C -0.055 4.055 14 C -0.395 4.395 15 S 0.465 5.535 16 C -0.287 4.287 17 C 0.404 3.596 18 O -0.358 6.358 19 O -0.322 6.322 20 N -0.081 5.081 21 H 0.060 0.940 22 H 0.096 0.904 23 H 0.031 0.969 24 H 0.051 0.949 25 H 0.011 0.989 26 H 0.072 0.928 27 H 0.108 0.892 28 H 0.063 0.937 29 H 0.203 0.797 30 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -5.759 -19.649 -5.434 21.185 hybrid contribution 0.002 1.499 0.319 1.532 sum -5.757 -18.151 -5.115 19.717 Atomic orbital electron populations 1.22273 0.88925 0.99378 1.00781 1.62062 1.06918 1.17935 1.38855 1.19759 0.95632 0.80761 0.96846 1.21099 1.34996 0.96873 1.01645 0.91914 1.24970 0.95247 0.97302 0.96998 1.69944 1.38259 1.11546 1.34102 0.86545 0.78636 0.78310 0.83832 1.20121 1.21329 1.20314 1.20681 1.01715 0.85006 0.93556 1.20417 0.91415 0.98243 0.95379 1.26848 1.04206 0.99699 1.08798 1.83744 1.22972 1.05077 1.41703 1.25700 0.99783 0.94563 1.08678 1.18880 0.81627 0.81086 0.77984 1.90994 1.22606 1.82919 1.39241 1.84492 1.57009 1.19451 1.71283 1.66403 1.29406 0.99235 1.13019 0.93997 0.90442 0.96890 0.94882 0.98885 0.92844 0.89152 0.93652 0.79679 0.71653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 9.06 60.06 0.54 1.22 16 2 N -0.53 -11.75 4.74 -245.83 -1.17 -12.92 16 3 C 0.19 5.10 4.72 -4.98 -0.02 5.08 16 4 C -0.51 -14.44 8.46 -34.44 -0.29 -14.73 16 5 H 0.06 1.78 7.13 -52.48 -0.37 1.40 16 6 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 7 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 8 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 C 0.12 2.22 5.38 -4.98 -0.03 2.19 16 13 C 0.08 1.36 5.52 -84.49 -0.47 0.90 16 14 C -0.25 -3.12 9.55 29.34 0.28 -2.84 16 15 S 0.21 2.20 23.06 -107.50 -2.48 -0.28 16 16 C -0.02 -0.22 7.46 -14.48 -0.11 -0.33 16 17 C 0.57 7.43 8.32 34.33 0.29 7.72 16 18 O -0.47 -7.89 17.86 -19.30 -0.34 -8.23 16 19 O -0.51 -4.15 13.30 -40.81 -0.54 -4.70 16 20 N -0.36 -6.40 10.57 -7.72 -0.08 -6.48 16 21 H 0.04 0.70 6.45 -51.93 -0.34 0.37 16 22 H 0.08 1.62 6.76 -51.93 -0.35 1.27 16 23 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 24 H 0.03 0.93 7.93 -51.93 -0.41 0.52 16 25 H -0.01 -0.18 8.12 -51.93 -0.42 -0.60 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.09 1.72 7.93 -51.93 -0.41 1.31 16 28 H 0.05 0.74 8.07 -51.93 -0.42 0.32 16 29 H 0.19 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.42 1.30 9.11 45.56 0.42 1.71 16 LS Contribution 283.62 15.07 4.27 4.27 Total: -1.00 -34.46 283.62 -6.82 -41.28 By element: Atomic # 1 Polarization: -2.17 SS G_CDS: -2.29 Total: -4.46 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 0.10 Total: 0.72 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: -0.51 Total: -45.50 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -0.89 Total: -12.93 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.48 Total: -0.28 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -34.46 -6.82 -41.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036902714.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.243 kcal (2) G-P(sol) polarization free energy of solvation -34.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds