Wall clock time and date at job start Mon Mar 30 2020 04:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46897 * 111.00201 * 2 1 4 4 C 1.50695 * 109.47652 * 66.04235 * 3 2 1 5 5 H 1.08012 * 119.99540 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00417 * 179.97438 * 4 3 2 7 7 N 1.31507 * 119.99633 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99898 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47249 * 60.00298 * 8 6 4 10 10 H 1.48505 * 109.47085 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47439 * 300.00366 * 8 6 4 12 12 C 1.46902 * 111.00261 * 236.03974 * 2 1 3 13 13 C 1.50698 * 109.46999 * 293.95725 * 12 2 1 14 14 C 1.34298 * 122.10807 * 95.00112 * 13 12 2 15 15 S 1.71068 * 109.08879 * 179.97438 * 14 13 12 16 16 C 1.76099 * 90.30128 * 359.97438 * 15 14 13 17 17 C 1.47103 * 125.54073 * 179.97438 * 16 15 14 18 18 O 1.21541 * 119.99801 * 180.02562 * 17 16 15 19 19 O 1.34817 * 120.00123 * 0.02562 * 17 16 15 20 20 N 1.30605 * 108.91508 * 0.02562 * 16 15 14 21 21 H 1.08995 * 109.47151 * 183.95768 * 1 2 3 22 22 H 1.09001 * 109.47073 * 303.95919 * 1 2 3 23 23 H 1.09000 * 109.47227 * 63.95747 * 1 2 3 24 24 H 1.09003 * 109.47247 * 186.04906 * 3 2 1 25 25 H 1.09000 * 109.46972 * 306.03969 * 3 2 1 26 26 H 0.97006 * 119.99842 * 180.02562 * 7 6 4 27 27 H 1.08995 * 109.47480 * 173.95129 * 12 2 1 28 28 H 1.09006 * 109.46330 * 53.95495 * 12 2 1 29 29 H 1.08002 * 125.45448 * 0.02562 * 14 13 12 30 30 H 0.96699 * 117.00479 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5113 2.0487 6 6 2.0277 3.3492 1.5287 7 7 2.7129 4.0015 0.6152 8 14 1.5826 4.1870 3.1379 9 1 2.1733 3.4295 4.2703 10 1 2.1150 5.5734 3.1379 11 1 0.1054 4.2246 3.2844 12 6 1.9955 -0.7661 -1.1375 13 6 1.6369 -2.2205 -0.9726 14 6 0.5463 -2.7561 -1.5447 15 16 0.4620 -4.4167 -1.1427 16 6 1.9452 -4.2743 -0.2042 17 6 2.6009 -5.3675 0.5300 18 8 3.6259 -5.1556 1.1478 19 8 2.0649 -6.6045 0.5175 20 7 2.3679 -3.0400 -0.2650 21 1 -0.3633 -1.0252 0.0709 22 1 -0.3633 0.5741 0.8524 23 1 -0.3634 0.4512 -0.9233 24 1 3.0797 1.3443 -0.1083 25 1 1.5612 1.9273 -0.8310 26 1 2.9882 4.9174 0.7775 27 1 3.0797 -0.6612 -1.1756 28 1 1.5611 -0.3873 -2.0627 29 1 -0.1634 -2.2238 -2.1607 30 1 2.5317 -7.2903 1.0142 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036902714.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:06 Heat of formation + Delta-G solvation = -58.801532 kcal Electronic energy + Delta-G solvation = -16220.894820 eV Core-core repulsion = 13335.528226 eV Total energy + Delta-G solvation = -2885.366594 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.59326 -40.68451 -38.01949 -37.16813 -34.73437 -32.32256 -29.36837 -28.75612 -27.80326 -25.90195 -23.32579 -22.16129 -20.64663 -19.71604 -18.66229 -18.46612 -17.88853 -17.17843 -16.81576 -16.19079 -15.80843 -15.73639 -15.11896 -14.83587 -14.31747 -14.14432 -13.74271 -13.47145 -12.95396 -12.85286 -12.74332 -12.59762 -12.39451 -12.27100 -12.15485 -11.82423 -11.35342 -10.85555 -10.75851 -10.61759 -9.89279 -9.02172 -8.20742 -6.30783 -0.95279 0.10530 0.52729 0.97026 1.40290 1.44081 1.51748 1.53726 1.88540 2.40689 3.11748 3.37981 3.48436 4.04301 4.05692 4.25021 4.40929 4.54660 4.59296 4.73875 4.84970 5.04688 5.16014 5.28601 5.38459 5.62929 6.03124 6.30545 6.51251 6.60877 6.83962 6.84277 7.38512 8.90064 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.031590 B = 0.004596 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.131475 B = 6091.029683 C = 6492.671815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.551 5.551 3 C 0.210 3.790 4 C -0.526 4.526 5 H 0.060 0.940 6 C 0.004 3.996 7 N -0.933 5.933 8 Si 0.969 3.031 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.264 1.264 12 C 0.124 3.876 13 C 0.054 3.946 14 C -0.246 4.246 15 S 0.337 5.663 16 C -0.056 4.056 17 C 0.575 3.425 18 O -0.522 6.522 19 O -0.488 6.488 20 N -0.417 5.417 21 H 0.071 0.929 22 H 0.055 0.945 23 H 0.026 0.974 24 H 0.000 1.000 25 H -0.026 1.026 26 H 0.265 0.735 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.217 0.783 30 H 0.447 0.553 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.412 -21.040 -6.093 23.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.276 5.276 3 C 0.084 3.916 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.195 4.195 7 N -0.573 5.573 8 Si 0.793 3.207 9 H -0.199 1.199 10 H -0.206 1.206 11 H -0.189 1.189 12 C -0.006 4.006 13 C -0.085 4.085 14 C -0.388 4.388 15 S 0.592 5.408 16 C -0.326 4.326 17 C 0.414 3.586 18 O -0.411 6.411 19 O -0.303 6.303 20 N -0.137 5.137 21 H 0.090 0.910 22 H 0.074 0.926 23 H 0.044 0.956 24 H 0.018 0.982 25 H -0.008 1.008 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.233 0.767 30 H 0.311 0.689 Dipole moment (debyes) X Y Z Total from point charges -8.290 -21.527 -5.665 23.754 hybrid contribution 0.682 1.867 0.283 2.007 sum -7.608 -19.660 -5.383 21.758 Atomic orbital electron populations 1.22228 0.87070 1.00954 1.00441 1.61904 1.08713 1.15443 1.41520 1.19369 0.93601 0.83183 0.95416 1.21414 1.35109 0.97487 1.02407 0.92224 1.25882 0.94938 0.97977 1.00658 1.70069 1.39154 1.11960 1.36163 0.85447 0.78974 0.77175 0.79084 1.19877 1.20593 1.18898 1.20570 1.00324 0.86725 0.92977 1.19994 0.93477 0.96944 0.98059 1.27264 1.02832 1.01652 1.07060 1.83292 1.18231 1.01865 1.37448 1.25910 1.02367 0.94091 1.10281 1.18900 0.80769 0.82029 0.76872 1.90968 1.24785 1.83880 1.41455 1.84435 1.56453 1.18223 1.71166 1.66291 1.31572 1.01055 1.14783 0.91004 0.92614 0.95592 0.98169 1.00834 0.92606 0.91619 0.91663 0.76662 0.68906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.55 9.06 127.69 1.16 2.71 16 2 N -0.55 -24.82 4.74 -931.68 -4.42 -29.24 16 3 C 0.21 11.52 4.72 85.56 0.40 11.92 16 4 C -0.53 -30.70 8.46 25.60 0.22 -30.48 16 5 H 0.06 3.44 7.13 -2.90 -0.02 3.42 16 6 C 0.00 0.21 5.46 84.66 0.46 0.67 16 7 N -0.93 -56.99 13.29 21.45 0.28 -56.71 16 8 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 9 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 12 C 0.12 4.64 5.38 85.56 0.46 5.10 16 13 C 0.05 1.71 5.52 41.83 0.23 1.94 16 14 C -0.25 -5.21 9.55 66.92 0.64 -4.57 16 15 S 0.34 5.63 23.06 -56.49 -1.30 4.33 16 16 C -0.06 -1.54 7.46 87.20 0.65 -0.89 16 17 C 0.57 14.54 8.32 70.15 0.58 15.12 16 18 O -0.52 -17.77 17.86 19.70 0.35 -17.42 16 19 O -0.49 -6.62 13.30 -57.30 -0.76 -7.39 16 20 N -0.42 -14.81 10.57 -178.35 -1.88 -16.69 16 21 H 0.07 2.24 6.45 -2.39 -0.02 2.22 16 22 H 0.05 2.32 6.76 -2.39 -0.02 2.30 16 23 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.00 0.01 7.93 -2.39 -0.02 -0.01 16 25 H -0.03 -1.49 8.12 -2.39 -0.02 -1.51 16 26 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 27 H 0.07 2.69 7.93 -2.39 -0.02 2.67 16 28 H 0.07 2.11 8.07 -2.38 -0.02 2.09 16 29 H 0.22 3.11 8.06 -2.91 -0.02 3.09 16 30 H 0.45 1.53 9.11 -74.06 -0.67 0.85 16 Total: -1.00 -78.34 283.62 -0.40 -78.74 By element: Atomic # 1 Polarization: -4.93 SS G_CDS: 0.50 Total: -4.42 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 4.80 Total: 1.52 kcal Atomic # 7 Polarization: -96.62 SS G_CDS: -6.02 Total: -102.64 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.41 Total: -24.81 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 16 Polarization: 5.63 SS G_CDS: -1.30 Total: 4.33 kcal Total: -78.34 -0.40 -78.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036902714.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.940 kcal (2) G-P(sol) polarization free energy of solvation -78.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds