Wall clock time and date at job start Mon Mar 30 2020 04:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42107 * 108.57640 * 2 1 4 4 O 1.42101 * 108.58050 * 228.97655 * 2 1 3 5 5 C 1.81399 * 101.92362 * 114.48707 * 2 1 3 6 6 C 1.52999 * 109.46810 * 179.97438 * 5 2 1 7 7 C 1.50706 * 109.46953 * 180.02562 * 6 5 2 8 8 N 1.32051 * 118.97805 * 90.00116 * 7 6 5 9 9 C 1.32433 * 121.29273 * 179.97438 * 8 7 6 10 10 C 1.38321 * 119.24786 * 0.02562 * 9 8 7 11 11 C 1.40900 * 118.15856 * 0.02562 * 10 9 8 12 12 C 1.41557 * 120.66360 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99422 * 359.97438 * 12 11 10 14 14 C 1.40108 * 120.00435 * 179.97438 * 12 11 10 15 15 N 1.30672 * 119.99934 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00307 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46976 * 59.99730 * 16 14 12 18 18 H 1.48499 * 109.47551 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47238 * 299.99985 * 16 14 12 20 20 N 1.31379 * 118.97691 * 269.73533 * 7 6 5 21 21 H 1.08997 * 109.47291 * 305.50850 * 1 2 3 22 22 H 1.09002 * 109.47649 * 65.51319 * 1 2 3 23 23 H 1.09003 * 109.46904 * 185.51523 * 1 2 3 24 24 H 1.09000 * 109.47070 * 300.00212 * 5 2 1 25 25 H 1.09001 * 109.46593 * 60.00209 * 5 2 1 26 26 H 1.09000 * 109.47486 * 299.99969 * 6 5 2 27 27 H 1.09001 * 109.47362 * 60.00691 * 6 5 2 28 28 H 1.08001 * 120.37480 * 179.97438 * 9 8 7 29 29 H 1.08001 * 120.92367 * 180.02562 * 10 9 8 30 30 H 0.96997 * 120.00675 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6152 6 6 3.7055 -0.8195 1.7978 7 6 4.0169 -1.4313 3.1394 8 7 4.1487 -2.7421 3.2298 9 6 4.4226 -3.3278 4.3855 10 6 4.5726 -2.5493 5.5189 11 6 4.4252 -1.1539 5.3914 12 6 4.5682 -0.3070 6.5167 13 1 4.7921 -0.7292 7.4852 14 6 4.4192 1.0788 6.3740 15 7 4.1478 1.5896 5.2023 16 14 4.6072 2.1962 7.8590 17 1 5.9699 2.0385 8.4278 18 1 4.4044 3.6079 7.4452 19 1 3.5974 1.8306 8.8846 20 7 4.1540 -0.6434 4.1818 21 1 -0.3634 0.5969 0.8365 22 1 -0.3634 0.4259 -0.9352 23 1 -0.3633 -1.0229 0.0988 24 1 1.7610 -0.1171 2.4042 25 1 1.7611 -1.7370 1.6664 26 1 4.1328 -1.4383 1.0087 27 1 4.1336 0.1816 1.7465 28 1 4.5268 -4.4013 4.4425 29 1 4.7966 -2.9986 6.4752 30 1 4.0450 2.5490 5.1033 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082360729.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:04 Heat of formation + Delta-G solvation = -34.392427 kcal Electronic energy + Delta-G solvation = -16612.478676 eV Core-core repulsion = 13728.170540 eV Total energy + Delta-G solvation = -2884.308136 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.03659 -36.77460 -35.84124 -34.35153 -33.39072 -31.36648 -29.92048 -29.44802 -26.44667 -24.39573 -22.18823 -20.63797 -18.67929 -17.76830 -16.59197 -16.06943 -15.83795 -15.75089 -14.99734 -14.39991 -13.75648 -13.68896 -13.34486 -13.27594 -13.18267 -12.74251 -12.27302 -11.88878 -11.87090 -11.79337 -11.35301 -11.25169 -11.00411 -10.90402 -10.73521 -10.36658 -10.27846 -9.81634 -9.06051 -8.68267 -8.07886 -7.51865 -6.55224 -4.85684 0.13678 2.54852 2.80666 2.90603 2.99708 3.01190 3.15885 3.77931 3.81200 4.16006 4.59666 4.77185 4.88205 5.08959 5.22981 5.26049 5.59294 5.71624 5.79403 5.89222 6.18006 6.40763 6.57451 6.64979 6.88816 7.04577 7.15631 7.76780 7.94732 8.41043 8.66948 8.97009 10.01553 10.13916 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.022769 B = 0.006370 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.434037 B = 4394.413914 C = 5342.225337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.420 3.580 3 O -0.939 6.939 4 O -0.945 6.945 5 C -0.587 4.587 6 C -0.026 4.026 7 C 0.311 3.689 8 N -0.623 5.623 9 C 0.133 3.867 10 C -0.326 4.326 11 C 0.267 3.733 12 C -0.418 4.418 13 H 0.088 0.912 14 C 0.068 3.932 15 N -0.706 5.706 16 Si 0.912 3.088 17 H -0.263 1.263 18 H -0.275 1.275 19 H -0.264 1.264 20 N -0.509 5.509 21 H 0.128 0.872 22 H 0.125 0.875 23 H 0.126 0.874 24 H 0.136 0.864 25 H 0.129 0.871 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.128 0.872 29 H 0.107 0.893 30 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.695 -0.417 -4.352 7.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.603 3.397 3 O -0.936 6.936 4 O -0.942 6.942 5 C -0.718 4.718 6 C -0.066 4.066 7 C 0.039 3.961 8 N -0.347 5.347 9 C -0.025 4.025 10 C -0.353 4.353 11 C 0.139 3.861 12 C -0.452 4.452 13 H 0.106 0.894 14 C -0.159 4.159 15 N -0.327 5.327 16 Si 0.735 3.265 17 H -0.188 1.188 18 H -0.200 1.200 19 H -0.188 1.188 20 N -0.229 5.229 21 H 0.146 0.854 22 H 0.143 0.857 23 H 0.145 0.855 24 H 0.154 0.846 25 H 0.148 0.852 26 H 0.104 0.896 27 H 0.114 0.886 28 H 0.145 0.855 29 H 0.125 0.875 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.367 0.490 -5.994 8.758 hybrid contribution -0.407 -0.287 2.307 2.361 sum -6.775 0.203 -3.687 7.716 Atomic orbital electron populations 1.30291 1.27770 1.11350 1.11373 1.07840 0.77964 0.75880 0.78006 1.93599 1.78680 1.34610 1.86705 1.93575 1.78866 1.67055 1.54677 1.30169 1.06346 1.13576 1.21703 1.19738 0.90243 1.02304 0.94337 1.22214 0.93117 0.86441 0.94363 1.67884 1.26024 1.12767 1.27980 1.22230 0.93328 0.98308 0.88607 1.22409 1.17195 0.96544 0.99201 1.18750 0.87170 0.89188 0.90986 1.19660 1.40005 0.90897 0.94655 0.89433 1.26139 0.93517 0.99175 0.97101 1.70041 1.25906 1.13551 1.23179 0.86313 0.80069 0.78701 0.81382 1.18757 1.19964 1.18817 1.69161 1.18711 1.36882 0.98126 0.85366 0.85674 0.85523 0.84570 0.85240 0.89553 0.88632 0.85452 0.87512 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -5.59 10.62 101.05 1.07 -4.51 16 2 S 2.42 31.34 5.36 -107.50 -0.58 30.77 16 3 O -0.94 -15.74 18.10 -57.83 -1.05 -16.78 16 4 O -0.94 -15.07 18.10 -57.83 -1.05 -16.12 16 5 C -0.59 -8.87 5.79 37.16 0.22 -8.65 16 6 C -0.03 -0.51 5.65 -27.88 -0.16 -0.67 16 7 C 0.31 7.53 6.89 -157.33 -1.08 6.44 16 8 N -0.62 -14.83 10.32 -10.81 -0.11 -14.94 16 9 C 0.13 3.02 11.29 -17.26 -0.19 2.82 16 10 C -0.33 -7.82 9.95 -38.54 -0.38 -8.20 16 11 C 0.27 7.14 6.58 -84.62 -0.56 6.58 16 12 C -0.42 -10.73 9.20 -37.62 -0.35 -11.07 16 13 H 0.09 2.08 7.85 -52.48 -0.41 1.66 16 14 C 0.07 1.65 5.50 -17.34 -0.10 1.56 16 15 N -0.71 -17.91 11.52 55.55 0.64 -17.27 16 16 Si 0.91 17.69 29.56 -169.99 -5.02 12.67 16 17 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 18 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 19 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 20 N -0.51 -13.59 7.94 -8.68 -0.07 -13.66 16 21 H 0.13 0.93 8.14 -51.93 -0.42 0.50 16 22 H 0.12 0.91 8.14 -51.92 -0.42 0.49 16 23 H 0.13 0.85 8.14 -51.92 -0.42 0.43 16 24 H 0.14 2.05 8.14 -51.92 -0.42 1.62 16 25 H 0.13 1.74 8.14 -51.92 -0.42 1.32 16 26 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 27 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 28 H 0.13 2.40 8.06 -52.49 -0.42 1.98 16 29 H 0.11 2.31 8.06 -52.49 -0.42 1.89 16 30 H 0.28 6.42 8.29 -40.82 -0.34 6.08 16 LS Contribution 282.93 15.07 4.26 4.26 Total: -1.00 -34.42 282.93 -7.85 -42.27 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -3.35 Total: 4.50 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -1.53 Total: -15.70 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.46 Total: -45.87 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -2.09 Total: -32.90 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.02 Total: 12.67 kcal Atomic # 16 Polarization: 31.34 SS G_CDS: -0.58 Total: 30.77 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -34.42 -7.85 -42.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082360729.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.880 kcal (2) G-P(sol) polarization free energy of solvation -34.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds