Wall clock time and date at job start Mon Mar 30 2020 04:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42107 * 108.57640 * 2 1 4 4 O 1.42101 * 108.58050 * 228.97655 * 2 1 3 5 5 C 1.81399 * 101.92362 * 114.48707 * 2 1 3 6 6 C 1.52999 * 109.46810 * 179.97438 * 5 2 1 7 7 C 1.50706 * 109.46953 * 180.02562 * 6 5 2 8 8 N 1.32051 * 118.97805 * 90.00116 * 7 6 5 9 9 C 1.32433 * 121.29273 * 179.97438 * 8 7 6 10 10 C 1.38321 * 119.24786 * 0.02562 * 9 8 7 11 11 C 1.40900 * 118.15856 * 0.02562 * 10 9 8 12 12 C 1.41557 * 120.66360 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99422 * 359.97438 * 12 11 10 14 14 C 1.40108 * 120.00435 * 179.97438 * 12 11 10 15 15 N 1.30672 * 119.99934 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00307 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46976 * 59.99730 * 16 14 12 18 18 H 1.48499 * 109.47551 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47238 * 299.99985 * 16 14 12 20 20 N 1.31379 * 118.97691 * 269.73533 * 7 6 5 21 21 H 1.08997 * 109.47291 * 305.50850 * 1 2 3 22 22 H 1.09002 * 109.47649 * 65.51319 * 1 2 3 23 23 H 1.09003 * 109.46904 * 185.51523 * 1 2 3 24 24 H 1.09000 * 109.47070 * 300.00212 * 5 2 1 25 25 H 1.09001 * 109.46593 * 60.00209 * 5 2 1 26 26 H 1.09000 * 109.47486 * 299.99969 * 6 5 2 27 27 H 1.09001 * 109.47362 * 60.00691 * 6 5 2 28 28 H 1.08001 * 120.37480 * 179.97438 * 9 8 7 29 29 H 1.08001 * 120.92367 * 180.02562 * 10 9 8 30 30 H 0.96997 * 120.00675 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6152 6 6 3.7055 -0.8195 1.7978 7 6 4.0169 -1.4313 3.1394 8 7 4.1487 -2.7421 3.2298 9 6 4.4226 -3.3278 4.3855 10 6 4.5726 -2.5493 5.5189 11 6 4.4252 -1.1539 5.3914 12 6 4.5682 -0.3070 6.5167 13 1 4.7921 -0.7292 7.4852 14 6 4.4192 1.0788 6.3740 15 7 4.1478 1.5896 5.2023 16 14 4.6072 2.1962 7.8590 17 1 5.9699 2.0385 8.4278 18 1 4.4044 3.6079 7.4452 19 1 3.5974 1.8306 8.8846 20 7 4.1540 -0.6434 4.1818 21 1 -0.3634 0.5969 0.8365 22 1 -0.3634 0.4259 -0.9352 23 1 -0.3633 -1.0229 0.0988 24 1 1.7610 -0.1171 2.4042 25 1 1.7611 -1.7370 1.6664 26 1 4.1328 -1.4383 1.0087 27 1 4.1336 0.1816 1.7465 28 1 4.5268 -4.4013 4.4425 29 1 4.7966 -2.9986 6.4752 30 1 4.0450 2.5490 5.1033 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082360729.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:03 Heat of formation + Delta-G solvation = -60.371913 kcal Electronic energy + Delta-G solvation = -16613.605231 eV Core-core repulsion = 13728.170540 eV Total energy + Delta-G solvation = -2885.434691 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.87837 -37.95140 -37.02228 -36.13472 -34.98386 -33.25197 -31.50473 -30.33059 -28.32715 -25.91684 -24.03559 -22.37652 -19.77057 -19.61089 -18.00483 -17.48060 -17.07373 -16.91676 -16.73472 -16.05783 -15.51602 -15.07347 -15.04083 -14.43954 -14.11697 -13.89931 -13.80943 -13.40588 -13.08704 -12.99406 -12.93944 -12.92315 -12.74539 -12.26816 -11.99498 -11.95639 -11.61092 -11.53372 -10.87410 -10.56862 -9.93111 -9.40089 -8.38177 -6.79128 -0.89910 0.71503 1.01413 1.40242 1.53425 1.56004 1.89773 2.18287 2.69531 2.83540 3.16362 3.56707 3.62428 3.80400 4.00557 4.07959 4.14773 4.30223 4.43770 4.54887 4.83545 4.87599 4.96675 5.01119 5.08019 5.24975 5.30563 5.93958 6.04895 6.54439 6.75909 7.09989 8.15789 8.32922 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.022769 B = 0.006370 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.434037 B = 4394.413914 C = 5342.225337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.629 4.629 2 S 2.439 3.561 3 O -0.983 6.983 4 O -0.977 6.977 5 C -0.592 4.592 6 C -0.033 4.033 7 C 0.297 3.703 8 N -0.630 5.630 9 C 0.132 3.868 10 C -0.343 4.343 11 C 0.231 3.769 12 C -0.447 4.447 13 H 0.098 0.902 14 C 0.024 3.976 15 N -0.742 5.742 16 Si 0.992 3.008 17 H -0.258 1.258 18 H -0.268 1.268 19 H -0.255 1.255 20 N -0.540 5.540 21 H 0.149 0.851 22 H 0.148 0.852 23 H 0.155 0.845 24 H 0.133 0.867 25 H 0.146 0.854 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.168 0.832 29 H 0.125 0.875 30 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.324 -0.482 -4.005 9.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.782 4.782 2 S 2.625 3.375 3 O -0.981 6.981 4 O -0.975 6.975 5 C -0.721 4.721 6 C -0.073 4.073 7 C 0.025 3.975 8 N -0.354 5.354 9 C -0.026 4.026 10 C -0.369 4.369 11 C 0.102 3.898 12 C -0.480 4.480 13 H 0.116 0.884 14 C -0.200 4.200 15 N -0.363 5.363 16 Si 0.811 3.189 17 H -0.183 1.183 18 H -0.192 1.192 19 H -0.179 1.179 20 N -0.261 5.261 21 H 0.167 0.833 22 H 0.167 0.833 23 H 0.173 0.827 24 H 0.151 0.849 25 H 0.164 0.836 26 H 0.113 0.887 27 H 0.099 0.901 28 H 0.185 0.815 29 H 0.143 0.857 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.935 0.393 -5.635 9.741 hybrid contribution 0.032 -0.343 2.136 2.163 sum -7.904 0.050 -3.499 8.644 Atomic orbital electron populations 1.30028 1.20467 1.14090 1.13665 1.07118 0.80484 0.73974 0.75970 1.93541 1.81421 1.36417 1.86675 1.93528 1.81387 1.67535 1.55003 1.30222 1.02973 1.14999 1.23865 1.19810 0.93811 1.01229 0.92456 1.22981 0.92218 0.86838 0.95450 1.68012 1.26289 1.12584 1.28488 1.22869 0.91757 1.00129 0.87843 1.22627 1.17828 0.95856 1.00633 1.19314 0.87961 0.90855 0.91621 1.20092 1.40818 0.92110 0.94986 0.88411 1.27099 0.92475 1.00191 1.00236 1.70139 1.26424 1.14277 1.25497 0.85113 0.80181 0.76428 0.77157 1.18266 1.19182 1.17895 1.69181 1.20096 1.37962 0.98811 0.83290 0.83327 0.82662 0.84901 0.83585 0.88742 0.90084 0.81468 0.85713 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -8.04 10.62 113.37 1.20 -6.83 16 2 S 2.44 60.82 5.36 -56.49 -0.30 60.52 16 3 O -0.98 -33.17 18.10 -127.37 -2.31 -35.47 16 4 O -0.98 -30.51 18.10 -127.37 -2.31 -32.81 16 5 C -0.59 -17.81 5.79 71.98 0.42 -17.39 16 6 C -0.03 -1.34 5.65 29.85 0.17 -1.17 16 7 C 0.30 14.71 6.89 138.80 0.96 15.67 16 8 N -0.63 -30.00 10.32 -188.10 -1.94 -31.94 16 9 C 0.13 5.89 11.29 84.62 0.96 6.84 16 10 C -0.34 -16.50 9.95 22.94 0.23 -16.27 16 11 C 0.23 12.60 6.58 40.27 0.26 12.87 16 12 C -0.45 -23.28 9.20 23.54 0.22 -23.06 16 13 H 0.10 4.67 7.85 -2.91 -0.02 4.65 16 14 C 0.02 1.18 5.50 85.32 0.47 1.65 16 15 N -0.74 -38.53 11.52 21.85 0.25 -38.28 16 16 Si 0.99 36.05 29.56 68.60 2.03 38.08 16 17 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 18 H -0.27 -9.30 7.11 99.48 0.71 -8.59 16 19 H -0.25 -8.84 7.11 99.48 0.71 -8.14 16 20 N -0.54 -29.76 7.94 -181.37 -1.44 -31.20 16 21 H 0.15 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.15 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.16 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.13 4.04 8.14 -2.39 -0.02 4.02 16 25 H 0.15 3.78 8.14 -2.39 -0.02 3.76 16 26 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 27 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 28 H 0.17 5.93 8.06 -2.91 -0.02 5.90 16 29 H 0.12 5.35 8.06 -2.91 -0.02 5.33 16 30 H 0.29 13.39 8.29 -92.71 -0.77 12.62 16 Total: -1.00 -76.62 282.93 0.01 -76.60 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 1.15 Total: 22.20 kcal Atomic # 6 Polarization: -32.58 SS G_CDS: 4.88 Total: -27.70 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -3.13 Total: -101.41 kcal Atomic # 8 Polarization: -63.68 SS G_CDS: -4.61 Total: -68.29 kcal Atomic # 14 Polarization: 36.05 SS G_CDS: 2.03 Total: 38.08 kcal Atomic # 16 Polarization: 60.82 SS G_CDS: -0.30 Total: 60.52 kcal Total: -76.62 0.01 -76.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082360729.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.232 kcal (2) G-P(sol) polarization free energy of solvation -76.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds