Wall clock time and date at job start Mon Mar 30 2020 04:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38178 * 119.96226 * 2 1 4 4 C 1.38132 * 120.14842 * 180.02562 * 3 2 1 5 5 C 1.38989 * 120.07479 * 0.02562 * 4 3 2 6 6 N 1.39663 * 120.03937 * 179.97438 * 5 4 3 7 7 S 1.65604 * 120.00328 * 44.99736 * 6 5 4 8 8 O 1.42099 * 106.39818 * 311.46249 * 7 6 5 9 9 O 1.42097 * 106.40313 * 178.53982 * 7 6 5 10 10 C 1.76203 * 107.21290 * 64.99990 * 7 6 5 11 11 H 1.07991 * 120.00454 * 359.72757 * 10 7 6 12 12 C 1.37885 * 119.99682 * 180.02562 * 10 7 6 13 13 N 1.31516 * 119.99913 * 359.72372 * 12 10 7 14 14 Si 1.86798 * 119.99766 * 179.72804 * 12 10 7 15 15 H 1.48490 * 109.47339 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47239 * 120.00108 * 14 12 10 17 17 H 1.48504 * 109.46636 * 239.99667 * 14 12 10 18 18 C 1.38753 * 119.92427 * 0.25126 * 5 4 3 19 19 C 1.38798 * 119.85047 * 359.49448 * 18 5 4 20 20 N 1.39668 * 120.03284 * 180.22526 * 19 18 5 21 21 H 1.09000 * 109.47108 * 89.99650 * 1 2 3 22 22 H 1.09001 * 109.46783 * 210.00314 * 1 2 3 23 23 H 1.08998 * 109.47168 * 329.99661 * 1 2 3 24 24 H 1.08007 * 119.92533 * 0.02562 * 3 2 1 25 25 H 1.08007 * 119.96536 * 179.97438 * 4 3 2 26 26 H 0.97005 * 120.00062 * 225.00107 * 6 5 4 27 27 H 0.97000 * 119.99651 * 180.02562 * 13 12 10 28 28 H 1.08005 * 120.07555 * 179.72672 * 18 5 4 29 29 H 0.97006 * 119.99767 * 180.27315 * 20 19 18 30 30 H 0.97003 * 120.00534 * 0.28485 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1971 0.0000 4 6 3.5784 1.2016 -0.0005 5 6 4.2788 0.0011 -0.0016 6 7 5.6755 0.0065 -0.0027 7 16 6.5004 1.0234 1.0112 8 8 5.9143 2.3083 0.8546 9 8 7.8820 0.7681 0.7984 10 6 6.1484 0.5135 2.6607 11 1 5.4914 -0.3250 2.8382 12 6 6.7069 1.1891 3.7250 13 7 7.5067 2.2105 3.5089 14 14 6.3277 0.6533 5.4739 15 1 5.4079 -0.5120 5.4462 16 1 7.5888 0.2730 6.1595 17 1 5.6846 1.7738 6.2063 18 6 3.5890 -1.2028 -0.0074 19 6 2.2010 -1.2037 -0.0015 20 7 1.5028 -2.4133 -0.0026 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8899 0.5139 24 1 1.6552 2.1314 0.0004 25 1 4.1148 2.1390 -0.0010 26 1 6.1623 -0.5854 -0.5974 27 1 7.8999 2.6855 4.2577 28 1 4.1308 -2.1371 -0.0127 29 1 0.5327 -2.4133 -0.0025 30 1 1.9878 -3.2534 -0.0033 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083913676.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:46 Heat of formation + Delta-G solvation = -71.652360 kcal Electronic energy + Delta-G solvation = -17001.750509 eV Core-core repulsion = 14115.826661 eV Total energy + Delta-G solvation = -2885.923848 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.067 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.28996 -35.71393 -35.11309 -34.04094 -33.32730 -33.06630 -30.66278 -28.50858 -26.13331 -25.45216 -22.14656 -20.83504 -19.04555 -17.71170 -17.40811 -16.49725 -16.22049 -15.11841 -14.91370 -14.50615 -14.16303 -13.73638 -13.66655 -13.47060 -13.07678 -12.27539 -12.08195 -12.02871 -11.48010 -11.23069 -11.22665 -10.98278 -10.72342 -10.58062 -10.41148 -10.29228 -9.90778 -9.49868 -9.25459 -8.81915 -7.84161 -7.07900 -6.70648 -5.32107 1.76751 2.07567 2.30435 3.06524 3.14564 3.23062 4.02216 4.10373 4.27156 4.62744 4.67877 5.19882 5.28604 5.50393 5.68603 5.74757 5.83419 5.94696 6.02691 6.14346 6.29223 6.50278 6.62389 6.70879 7.04230 7.22943 7.30612 7.36707 7.70220 7.91231 7.96896 7.99321 8.88965 10.23315 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.023491 B = 0.007599 C = 0.006754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.640349 B = 3683.809215 C = 4144.911611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.193 4.193 3 C -0.054 4.054 4 C -0.197 4.197 5 C 0.219 3.781 6 N -1.075 6.075 7 S 2.708 3.292 8 O -0.994 6.994 9 O -1.000 7.000 10 C -1.012 5.012 11 H 0.104 0.896 12 C 0.134 3.866 13 N -0.846 5.846 14 Si 0.921 3.079 15 H -0.262 1.262 16 H -0.271 1.271 17 H -0.270 1.270 18 C -0.220 4.220 19 C 0.225 3.775 20 N -0.882 5.882 21 H 0.058 0.942 22 H 0.053 0.947 23 H 0.063 0.937 24 H 0.122 0.878 25 H 0.158 0.842 26 H 0.410 0.590 27 H 0.291 0.709 28 H 0.120 0.880 29 H 0.394 0.606 30 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.810 -6.919 -5.270 14.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.198 4.198 3 C -0.073 4.073 4 C -0.220 4.220 5 C 0.121 3.879 6 N -0.819 5.819 7 S 2.809 3.191 8 O -0.984 6.984 9 O -0.991 6.991 10 C -1.146 5.146 11 H 0.122 0.878 12 C -0.084 4.084 13 N -0.475 5.475 14 Si 0.745 3.255 15 H -0.186 1.186 16 H -0.196 1.196 17 H -0.195 1.195 18 C -0.246 4.246 19 C 0.121 3.879 20 N -0.423 5.423 21 H 0.077 0.923 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.140 0.860 25 H 0.176 0.824 26 H 0.244 0.756 27 H 0.101 0.899 28 H 0.138 0.862 29 H 0.223 0.777 30 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -11.114 -5.871 -5.410 13.685 hybrid contribution -0.315 -1.361 1.181 1.829 sum -11.430 -7.232 -4.229 14.171 Atomic orbital electron populations 1.20494 0.91962 1.01795 1.01118 1.19247 0.95284 0.91937 1.13359 1.20626 0.93465 0.96557 0.96648 1.21814 0.94661 0.98890 1.06641 1.17116 0.82500 0.93021 0.95267 1.54016 1.12016 1.60024 1.55839 1.00801 0.71603 0.72098 0.74606 1.93306 1.77951 1.39582 1.87525 1.93387 1.32896 1.85344 1.87424 1.30467 1.42352 1.27892 1.13920 0.87774 1.24736 0.90392 0.91700 1.01592 1.69899 1.25419 1.16983 1.35246 0.86113 0.79087 0.79595 0.80692 1.18576 1.19590 1.19512 1.20435 0.92050 0.97589 1.14565 1.17253 0.90518 0.85936 0.94194 1.42441 1.08601 1.05022 1.86264 0.92349 0.92840 0.91838 0.86035 0.82444 0.75634 0.89888 0.86197 0.77703 0.77843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 9.57 36.01 0.34 -0.71 16 2 C -0.19 -2.87 5.90 -104.38 -0.62 -3.48 16 3 C -0.05 -0.89 9.68 -39.64 -0.38 -1.28 16 4 C -0.20 -3.95 9.18 -39.34 -0.36 -4.32 16 5 C 0.22 4.34 6.21 -83.82 -0.52 3.82 16 6 N -1.08 -22.36 5.76 32.39 0.19 -22.17 16 7 S 2.71 72.11 4.95 -107.50 -0.53 71.58 16 8 O -0.99 -28.29 14.94 -57.17 -0.85 -29.14 16 9 O -1.00 -29.22 18.02 -57.17 -1.03 -30.25 16 10 C -1.01 -28.32 9.68 30.60 0.30 -28.02 16 11 H 0.10 2.74 7.81 -52.49 -0.41 2.33 16 12 C 0.13 3.76 5.46 -17.82 -0.10 3.66 16 13 N -0.85 -24.87 13.19 55.43 0.73 -24.14 16 14 Si 0.92 20.90 29.54 -169.99 -5.02 15.88 16 15 H -0.26 -5.79 7.11 56.52 0.40 -5.38 16 16 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 17 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 18 C -0.22 -3.71 9.81 -39.18 -0.38 -4.09 16 19 C 0.23 3.36 6.73 -83.82 -0.56 2.79 16 20 N -0.88 -9.48 8.99 32.39 0.29 -9.19 16 21 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.50 6.54 -51.93 -0.34 0.16 16 23 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 24 H 0.12 1.72 8.06 -52.48 -0.42 1.29 16 25 H 0.16 3.48 5.58 -52.48 -0.29 3.19 16 26 H 0.41 7.17 8.95 -34.47 -0.31 6.86 16 27 H 0.29 7.65 8.31 -40.82 -0.34 7.31 16 28 H 0.12 1.79 8.06 -52.48 -0.42 1.36 16 29 H 0.39 3.41 6.82 -40.82 -0.28 3.14 16 30 H 0.39 3.55 8.84 -40.82 -0.36 3.19 16 LS Contribution 274.12 15.07 4.13 4.13 Total: -1.00 -34.86 274.12 -7.20 -42.06 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -2.81 Total: 12.86 kcal Atomic # 6 Polarization: -29.34 SS G_CDS: -2.29 Total: -31.63 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: 1.21 Total: -55.50 kcal Atomic # 8 Polarization: -57.50 SS G_CDS: -1.88 Total: -59.39 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 72.11 SS G_CDS: -0.53 Total: 71.58 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -34.86 -7.20 -42.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083913676.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.596 kcal (2) G-P(sol) polarization free energy of solvation -34.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds