Wall clock time and date at job start Mon Mar 30 2020 04:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38178 * 119.96226 * 2 1 4 4 C 1.38132 * 120.14842 * 180.02562 * 3 2 1 5 5 C 1.38989 * 120.07479 * 0.02562 * 4 3 2 6 6 N 1.39663 * 120.03937 * 179.97438 * 5 4 3 7 7 S 1.65604 * 120.00328 * 44.99736 * 6 5 4 8 8 O 1.42099 * 106.39818 * 311.46249 * 7 6 5 9 9 O 1.42097 * 106.40313 * 178.53982 * 7 6 5 10 10 C 1.76203 * 107.21290 * 64.99990 * 7 6 5 11 11 H 1.07991 * 120.00454 * 359.72757 * 10 7 6 12 12 C 1.37885 * 119.99682 * 180.02562 * 10 7 6 13 13 N 1.31516 * 119.99913 * 359.72372 * 12 10 7 14 14 Si 1.86798 * 119.99766 * 179.72804 * 12 10 7 15 15 H 1.48490 * 109.47339 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47239 * 120.00108 * 14 12 10 17 17 H 1.48504 * 109.46636 * 239.99667 * 14 12 10 18 18 C 1.38753 * 119.92427 * 0.25126 * 5 4 3 19 19 C 1.38798 * 119.85047 * 359.49448 * 18 5 4 20 20 N 1.39668 * 120.03284 * 180.22526 * 19 18 5 21 21 H 1.09000 * 109.47108 * 89.99650 * 1 2 3 22 22 H 1.09001 * 109.46783 * 210.00314 * 1 2 3 23 23 H 1.08998 * 109.47168 * 329.99661 * 1 2 3 24 24 H 1.08007 * 119.92533 * 0.02562 * 3 2 1 25 25 H 1.08007 * 119.96536 * 179.97438 * 4 3 2 26 26 H 0.97005 * 120.00062 * 225.00107 * 6 5 4 27 27 H 0.97000 * 119.99651 * 180.02562 * 13 12 10 28 28 H 1.08005 * 120.07555 * 179.72672 * 18 5 4 29 29 H 0.97006 * 119.99767 * 180.27315 * 20 19 18 30 30 H 0.97003 * 120.00534 * 0.28485 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1971 0.0000 4 6 3.5784 1.2016 -0.0005 5 6 4.2788 0.0011 -0.0016 6 7 5.6755 0.0065 -0.0027 7 16 6.5004 1.0234 1.0112 8 8 5.9143 2.3083 0.8546 9 8 7.8820 0.7681 0.7984 10 6 6.1484 0.5135 2.6607 11 1 5.4914 -0.3250 2.8382 12 6 6.7069 1.1891 3.7250 13 7 7.5067 2.2105 3.5089 14 14 6.3277 0.6533 5.4739 15 1 5.4079 -0.5120 5.4462 16 1 7.5888 0.2730 6.1595 17 1 5.6846 1.7738 6.2063 18 6 3.5890 -1.2028 -0.0074 19 6 2.2010 -1.2037 -0.0015 20 7 1.5028 -2.4133 -0.0026 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8899 0.5139 24 1 1.6552 2.1314 0.0004 25 1 4.1148 2.1390 -0.0010 26 1 6.1623 -0.5854 -0.5974 27 1 7.8999 2.6855 4.2577 28 1 4.1308 -2.1371 -0.0127 29 1 0.5327 -2.4133 -0.0025 30 1 1.9878 -3.2534 -0.0033 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083913676.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:46 Heat of formation + Delta-G solvation = -100.045712 kcal Electronic energy + Delta-G solvation = -17002.981737 eV Core-core repulsion = 14115.826661 eV Total energy + Delta-G solvation = -2887.155076 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.57449 -37.57869 -36.82120 -36.22482 -35.21127 -34.50896 -31.92354 -29.71121 -28.29381 -26.65489 -23.42029 -22.19110 -21.06207 -19.49612 -18.87811 -18.31176 -17.59732 -17.05866 -16.25035 -16.12690 -15.92661 -15.37556 -15.05698 -14.72504 -14.38682 -14.03733 -13.41784 -13.34488 -13.27272 -13.04428 -12.79874 -12.60930 -12.57030 -12.31187 -12.13692 -11.97341 -11.57040 -11.28183 -11.09817 -10.76148 -9.22011 -8.78089 -8.25463 -7.51260 0.10511 0.61316 0.78199 1.31307 1.32124 1.50274 2.18689 2.54940 2.78630 2.97191 3.12827 3.62343 4.05927 4.19172 4.30670 4.41075 4.60046 4.63383 4.93738 4.94781 4.98863 5.08911 5.23939 5.41192 5.44479 5.67789 5.80351 5.87623 6.04726 6.35839 6.68954 6.74966 7.11955 8.18487 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.023491 B = 0.007599 C = 0.006754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.640349 B = 3683.809215 C = 4144.911611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.188 4.188 3 C -0.058 4.058 4 C -0.234 4.234 5 C 0.187 3.813 6 N -1.062 6.062 7 S 2.716 3.284 8 O -1.023 7.023 9 O -1.037 7.037 10 C -1.033 5.033 11 H 0.114 0.886 12 C 0.072 3.928 13 N -0.892 5.892 14 Si 0.990 3.010 15 H -0.251 1.251 16 H -0.255 1.255 17 H -0.257 1.257 18 C -0.225 4.225 19 C 0.231 3.769 20 N -0.862 5.862 21 H 0.077 0.923 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.141 0.859 25 H 0.124 0.876 26 H 0.423 0.577 27 H 0.300 0.700 28 H 0.138 0.862 29 H 0.408 0.592 30 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.610 -9.060 -4.392 17.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.193 4.193 3 C -0.077 4.077 4 C -0.258 4.258 5 C 0.090 3.910 6 N -0.811 5.811 7 S 2.818 3.182 8 O -1.013 7.013 9 O -1.027 7.027 10 C -1.167 5.167 11 H 0.132 0.868 12 C -0.141 4.141 13 N -0.523 5.523 14 Si 0.808 3.192 15 H -0.174 1.174 16 H -0.179 1.179 17 H -0.181 1.181 18 C -0.251 4.251 19 C 0.124 3.876 20 N -0.404 5.404 21 H 0.095 0.905 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.159 0.841 25 H 0.142 0.858 26 H 0.260 0.740 27 H 0.111 0.889 28 H 0.156 0.844 29 H 0.240 0.760 30 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -13.935 -8.048 -4.563 16.727 hybrid contribution 0.406 -0.757 0.792 1.168 sum -13.530 -8.805 -3.771 16.577 Atomic orbital electron populations 1.20596 0.88645 1.03295 1.02768 1.19702 0.97609 0.91048 1.10976 1.20871 0.92195 0.98536 0.96120 1.21710 0.96352 0.97833 1.09858 1.17335 0.81515 0.94252 0.97911 1.53279 1.12894 1.59615 1.55325 1.00212 0.70944 0.72142 0.74876 1.93276 1.78225 1.41818 1.87970 1.93324 1.35398 1.85991 1.88010 1.30784 1.42675 1.28382 1.14875 0.86752 1.25992 0.89809 0.91453 1.06831 1.69979 1.26680 1.18394 1.37243 0.85107 0.79794 0.79842 0.74481 1.17360 1.17942 1.18081 1.20584 0.93159 0.97039 1.14365 1.17355 0.90026 0.87523 0.92675 1.42384 1.09402 1.04086 1.84489 0.90470 0.90781 0.91029 0.84126 0.85778 0.74040 0.88940 0.84411 0.75987 0.76470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.68 9.57 71.24 0.68 -1.00 16 2 C -0.19 -5.05 5.90 -19.71 -0.12 -5.17 16 3 C -0.06 -1.89 9.68 22.23 0.22 -1.68 16 4 C -0.23 -9.69 9.18 22.42 0.21 -9.48 16 5 C 0.19 7.49 6.21 38.20 0.24 7.73 16 6 N -1.06 -45.59 5.76 -51.43 -0.30 -45.89 16 7 S 2.72 150.71 4.95 -56.49 -0.28 150.43 16 8 O -1.02 -61.52 14.94 -128.00 -1.91 -63.44 16 9 O -1.04 -63.17 18.02 -128.00 -2.31 -65.47 16 10 C -1.03 -58.79 9.68 67.74 0.66 -58.13 16 11 H 0.11 6.04 7.81 -2.92 -0.02 6.02 16 12 C 0.07 4.09 5.46 84.66 0.46 4.56 16 13 N -0.89 -53.70 13.19 21.45 0.28 -53.41 16 14 Si 0.99 42.12 29.54 68.60 2.03 44.15 16 15 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 16 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 17 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 18 C -0.22 -7.24 9.81 22.53 0.22 -7.02 16 19 C 0.23 6.19 6.73 38.20 0.26 6.45 16 20 N -0.86 -14.80 8.99 -51.42 -0.46 -15.26 16 21 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 22 H 0.07 1.01 6.54 -2.39 -0.02 0.99 16 23 H 0.07 1.18 8.08 -2.39 -0.02 1.16 16 24 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 25 H 0.12 5.90 5.58 -2.91 -0.02 5.89 16 26 H 0.42 15.25 8.95 -96.74 -0.87 14.38 16 27 H 0.30 16.12 8.31 -92.71 -0.77 15.35 16 28 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 29 H 0.41 5.01 6.82 -92.70 -0.63 4.38 16 30 H 0.41 5.57 8.84 -92.71 -0.82 4.75 16 Total: -1.00 -78.12 274.12 -1.23 -79.35 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: -1.11 Total: 33.28 kcal Atomic # 6 Polarization: -66.57 SS G_CDS: 2.82 Total: -63.75 kcal Atomic # 7 Polarization: -114.08 SS G_CDS: -0.48 Total: -114.56 kcal Atomic # 8 Polarization: -124.69 SS G_CDS: -4.22 Total: -128.91 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Atomic # 16 Polarization: 150.71 SS G_CDS: -0.28 Total: 150.43 kcal Total: -78.12 -1.23 -79.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083913676.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.691 kcal (2) G-P(sol) polarization free energy of solvation -78.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds